Query gi|254780827|ref|YP_003065240.1| pantothenate kinase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 311
No_of_seqs 245 out of 848
Neff 5.6
Searched_HMMs 39220
Date Sun May 29 19:32:56 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780827.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05439 pantothenate kinase; 100.0 0 0 811.7 32.8 307 1-311 4-312 (312)
2 COG1072 CoaA Panthothenate kin 100.0 0 0 614.3 25.4 281 2-289 1-283 (283)
3 TIGR00554 panK_bact pantothena 100.0 0 0 511.9 21.8 306 5-310 1-309 (309)
4 cd02025 PanK Pantothenate kina 100.0 0 0 476.2 21.7 219 85-308 1-220 (220)
5 PRK09270 frcK putative fructos 100.0 0 0 334.6 19.4 198 78-302 29-227 (230)
6 TIGR00235 udk uridine kinase; 100.0 0 0 333.1 12.1 193 79-304 6-207 (220)
7 PRK05480 uridine kinase; Provi 100.0 5.6E-45 0 324.4 17.0 190 80-304 3-194 (209)
8 PTZ00301 uridine kinase; Provi 100.0 1.7E-44 0 321.4 16.5 191 82-304 2-195 (210)
9 cd02023 UMPK Uridine monophosp 100.0 8.6E-43 0 309.7 16.3 185 85-303 1-186 (198)
10 PRK07429 phosphoribulokinase; 100.0 9.4E-41 2.8E-45 295.9 19.1 182 78-297 3-185 (331)
11 COG0572 Udk Uridine kinase [Nu 100.0 4.7E-41 1.4E-45 297.9 14.8 191 81-305 6-197 (218)
12 pfam00485 PRK Phosphoribulokin 100.0 1.2E-38 3E-43 281.7 15.5 187 85-303 1-195 (196)
13 cd02026 PRK Phosphoribulokinas 100.0 3.2E-36 8.2E-41 265.2 16.5 178 85-300 1-179 (273)
14 cd02028 UMPK_like Uridine mono 100.0 1.6E-36 4.2E-41 267.1 14.8 176 85-296 1-177 (179)
15 PRK08233 hypothetical protein; 100.0 1.3E-31 3.4E-36 233.9 15.4 158 81-296 1-159 (182)
16 PRK07667 uridine kinase; Provi 100.0 8.5E-30 2.2E-34 221.7 16.3 174 84-296 15-190 (190)
17 PRK06696 uridine kinase; Valid 100.0 3.8E-29 9.6E-34 217.3 19.2 203 64-299 8-215 (227)
18 cd02024 NRK1 Nicotinamide ribo 100.0 5.3E-30 1.3E-34 223.1 7.9 164 85-285 1-181 (187)
19 KOG4203 consensus 99.9 1.5E-26 3.9E-31 199.6 10.1 197 78-305 39-243 (473)
20 COG4240 Predicted kinase [Gene 99.9 3.5E-22 8.9E-27 170.1 20.3 209 79-302 46-291 (300)
21 KOG2702 consensus 99.9 2.1E-23 5.4E-28 178.3 12.0 190 78-297 116-320 (323)
22 cd02029 PRK_like Phosphoribulo 99.9 1.1E-22 2.9E-27 173.4 14.1 185 85-298 1-202 (277)
23 KOG2878 consensus 99.8 1.6E-17 4.2E-22 138.4 15.2 196 77-289 25-257 (282)
24 PRK06547 hypothetical protein; 99.7 1.9E-15 4.8E-20 124.5 14.4 160 83-300 15-175 (184)
25 KOG3308 consensus 99.4 4.4E-13 1.1E-17 108.4 6.8 140 81-237 2-148 (225)
26 cd02022 DPCK Dephospho-coenzym 99.0 6.3E-10 1.6E-14 87.1 5.0 163 85-300 1-176 (179)
27 PRK00081 coaE dephospho-CoA ki 98.9 1.3E-09 3.3E-14 85.0 3.9 166 83-300 2-180 (199)
28 pfam01121 CoaE Dephospho-CoA k 98.8 7.7E-09 2E-13 79.7 5.0 164 84-300 1-176 (179)
29 PRK01184 hypothetical protein; 98.5 5.3E-07 1.4E-11 67.2 7.6 160 84-300 2-163 (183)
30 cd02019 NK Nucleoside/nucleoti 98.5 8.9E-08 2.3E-12 72.5 3.5 63 85-225 1-63 (69)
31 TIGR01846 type_I_sec_HlyB type 98.4 3.2E-07 8.2E-12 68.7 5.2 104 85-194 493-627 (703)
32 COG3954 PrkB Phosphoribulokina 98.4 2.4E-06 6E-11 62.8 8.3 185 81-296 4-206 (289)
33 COG2074 2-phosphoglycerate kin 98.3 1.2E-05 3.1E-10 58.0 11.3 188 30-253 42-243 (299)
34 COG0237 CoaE Dephospho-CoA kin 98.3 1.9E-07 4.7E-12 70.3 2.0 132 83-238 2-145 (201)
35 PRK03333 coaE dephospho-CoA ki 98.3 4.1E-06 1E-10 61.2 7.6 131 84-237 2-144 (394)
36 PRK08118 topology modulation p 98.2 1.9E-05 4.9E-10 56.6 10.3 148 86-297 4-155 (167)
37 PRK07261 topology modulation p 98.2 4.2E-05 1.1E-09 54.4 10.8 105 86-248 3-110 (171)
38 TIGR03499 FlhF flagellar biosy 98.1 4.1E-05 1.1E-09 54.4 10.4 77 83-160 194-273 (282)
39 TIGR02173 cyt_kin_arch cytidyl 98.1 5.2E-06 1.3E-10 60.5 5.1 113 85-240 2-116 (173)
40 pfam00448 SRP54 SRP54-type pro 98.0 1.5E-05 3.7E-10 57.5 6.5 47 83-131 1-47 (196)
41 PRK03839 putative kinase; Prov 98.0 8E-05 2E-09 52.5 10.0 99 85-237 2-100 (180)
42 COG1703 ArgK Putative periplas 98.0 1.6E-05 4E-10 57.3 6.1 70 51-122 18-89 (323)
43 PRK06217 hypothetical protein; 98.0 7.7E-05 2E-09 52.6 9.4 104 85-241 3-108 (185)
44 PRK09435 arginine/ornithine tr 98.0 2.8E-05 7.1E-10 55.6 6.7 69 50-122 15-87 (325)
45 cd02020 CMPK Cytidine monophos 97.9 4.6E-05 1.2E-09 54.1 7.4 24 85-108 1-24 (147)
46 pfam03308 ArgK ArgK protein. T 97.9 3.7E-05 9.6E-10 54.7 6.8 41 81-122 27-67 (267)
47 COG0378 HypB Ni2+-binding GTPa 97.9 0.00011 2.7E-09 51.7 9.0 136 79-231 8-166 (202)
48 PRK06731 flhF flagellar biosyn 97.9 0.00017 4.3E-09 50.3 9.9 78 79-158 71-150 (270)
49 PRK05703 flhF flagellar biosyn 97.9 6.5E-05 1.7E-09 53.1 7.7 86 84-171 211-301 (412)
50 PRK04182 cytidylate kinase; Pr 97.9 0.00023 5.8E-09 49.4 10.0 110 85-237 2-111 (178)
51 PRK12724 flagellar biosynthesi 97.8 0.00053 1.4E-08 46.9 11.3 72 83-155 223-296 (432)
52 pfam08433 KTI12 Chromatin asso 97.8 0.00012 3E-09 51.4 7.9 115 85-238 1-118 (266)
53 PRK08356 hypothetical protein; 97.8 2.1E-05 5.4E-10 56.4 4.0 123 84-237 6-135 (195)
54 PRK04220 2-phosphoglycerate ki 97.8 0.00026 6.6E-09 49.0 8.8 182 39-256 54-250 (306)
55 PRK00023 cmk cytidylate kinase 97.8 3E-05 7.6E-10 55.4 4.0 37 83-125 4-40 (225)
56 PRK06995 flhF flagellar biosyn 97.8 0.00016 4E-09 50.5 7.6 80 85-166 178-260 (404)
57 COG1102 Cmk Cytidylate kinase 97.7 9E-05 2.3E-09 52.1 6.3 111 85-238 2-112 (179)
58 PRK11176 lipid transporter ATP 97.7 4.8E-05 1.2E-09 54.0 4.8 68 85-156 370-455 (581)
59 PRK12723 flagellar biosynthesi 97.7 0.0002 5.1E-09 49.8 7.6 78 81-159 172-254 (388)
60 PRK06762 hypothetical protein; 97.7 8.8E-05 2.2E-09 52.2 5.4 103 85-230 4-109 (166)
61 TIGR00750 lao LAO/AO transport 97.6 0.00014 3.5E-09 50.9 5.7 68 52-121 6-75 (333)
62 COG1419 FlhF Flagellar GTP-bin 97.6 0.00028 7.1E-09 48.8 7.3 77 83-160 203-282 (407)
63 COG0541 Ffh Signal recognition 97.6 0.00021 5.3E-09 49.6 6.6 79 80-160 97-181 (451)
64 TIGR03574 selen_PSTK L-seryl-t 97.6 0.00095 2.4E-08 45.2 10.0 115 85-238 1-117 (249)
65 PRK10789 putative multidrug tr 97.6 7.9E-05 2E-09 52.5 4.4 49 85-133 343-409 (569)
66 PRK12726 flagellar biosynthesi 97.6 0.00079 2E-08 45.7 9.5 76 65-142 182-263 (407)
67 PRK11860 bifunctional 3-phosph 97.6 0.00019 4.9E-09 49.9 6.4 30 78-108 438-467 (662)
68 PRK13657 cyclic beta-1,2-gluca 97.6 7.3E-05 1.9E-09 52.7 4.2 98 85-194 363-497 (585)
69 PRK10867 signal recognition pa 97.6 0.00016 4.1E-09 50.4 5.9 55 79-134 96-150 (453)
70 PRK10790 putative multidrug tr 97.6 0.00014 3.6E-09 50.8 5.6 100 85-194 369-502 (593)
71 PRK12727 flagellar biosynthesi 97.6 0.00043 1.1E-08 47.5 8.0 87 85-175 350-441 (557)
72 TIGR00959 ffh signal recogniti 97.6 0.00036 9.1E-09 48.1 7.4 79 67-171 78-165 (439)
73 PRK10416 cell division protein 97.6 0.00041 1E-08 47.7 7.5 49 79-129 291-339 (499)
74 PRK00771 signal recognition pa 97.6 0.00064 1.6E-08 46.4 8.4 64 66-131 79-143 (433)
75 cd03116 MobB Molybdenum is an 97.6 0.00074 1.9E-08 45.9 8.7 97 83-199 1-105 (159)
76 cd03115 SRP The signal recogni 97.5 0.00026 6.6E-09 49.0 6.2 45 85-131 2-46 (173)
77 PRK11889 flhF flagellar biosyn 97.5 0.00069 1.8E-08 46.1 8.3 77 81-159 239-317 (436)
78 PRK11929 putative bifunctional 97.5 0.0014 3.6E-08 44.0 9.8 99 65-174 95-193 (953)
79 PRK11174 cysteine/glutathione 97.5 0.00013 3.4E-09 50.9 4.4 98 85-194 378-511 (588)
80 cd03114 ArgK-like The function 97.5 0.00016 4.1E-09 50.4 4.4 120 85-227 1-123 (148)
81 PRK12338 hypothetical protein; 97.4 0.00017 4.3E-09 50.3 3.8 38 81-123 2-39 (320)
82 TIGR01085 murE UDP-N-acetylmur 97.4 0.0019 5E-08 43.1 9.0 102 64-175 71-173 (494)
83 TIGR02533 type_II_gspE general 97.4 0.00019 4.8E-09 50.0 3.7 39 81-122 242-281 (495)
84 COG2274 SunT ABC-type bacterio 97.4 0.00034 8.7E-09 48.2 5.1 101 85-193 501-634 (709)
85 cd01673 dNK Deoxyribonucleosid 97.4 0.00025 6.3E-09 49.2 4.3 23 85-107 1-23 (193)
86 PRK00139 murE UDP-N-acetylmura 97.4 0.0021 5.4E-08 42.9 9.0 94 68-173 87-180 (481)
87 cd03248 ABCC_TAP TAP, the Tran 97.3 0.00013 3.4E-09 51.0 2.7 48 85-132 42-107 (226)
88 cd03254 ABCC_Glucan_exporter_l 97.3 0.00019 4.8E-09 49.9 3.3 48 85-132 31-96 (229)
89 cd01672 TMPK Thymidine monopho 97.3 0.0023 6E-08 42.5 8.8 34 85-119 2-35 (200)
90 cd03249 ABC_MTABC3_MDL1_MDL2 M 97.3 0.00013 3.3E-09 51.0 2.1 48 85-132 31-96 (238)
91 PRK11160 cysteine/glutathione 97.3 0.00023 6E-09 49.3 3.2 70 85-159 369-456 (575)
92 cd03250 ABCC_MRP_domain1 Domai 97.3 0.00035 9E-09 48.1 4.0 48 85-132 33-85 (204)
93 PRK05541 adenylylsulfate kinas 97.2 0.00048 1.2E-08 47.2 4.5 43 80-123 4-46 (176)
94 PRK12337 2-phosphoglycerate ki 97.2 0.0011 2.7E-08 44.8 6.3 80 32-123 216-297 (492)
95 KOG3220 consensus 97.2 0.00024 6.1E-09 49.2 2.8 23 84-106 2-24 (225)
96 COG4088 Predicted nucleotide k 97.2 0.00079 2E-08 45.7 5.4 42 83-126 2-46 (261)
97 cd03253 ABCC_ATM1_transporter 97.2 0.00026 6.7E-09 49.0 2.8 48 85-132 29-94 (236)
98 cd03291 ABCC_CFTR1 The CFTR su 97.2 0.00034 8.8E-09 48.2 3.4 47 85-131 65-116 (282)
99 TIGR02782 TrbB_P P-type conjug 97.2 0.00054 1.4E-08 46.8 4.3 118 32-158 89-213 (315)
100 KOG3354 consensus 97.2 0.0024 6.1E-08 42.4 7.5 81 77-165 6-89 (191)
101 cd03251 ABCC_MsbA MsbA is an e 97.2 0.00097 2.5E-08 45.1 5.5 69 85-158 30-116 (234)
102 cd03290 ABCC_SUR1_N The SUR do 97.1 0.0014 3.7E-08 44.0 6.1 48 85-132 29-98 (218)
103 TIGR00455 apsK adenylylsulfate 97.1 0.00075 1.9E-08 45.9 4.6 52 81-141 17-68 (187)
104 TIGR01425 SRP54_euk signal rec 97.1 0.00074 1.9E-08 45.9 4.6 221 16-302 38-274 (453)
105 PRK13973 thymidylate kinase; P 97.1 0.0077 2E-07 39.0 9.7 134 83-237 3-149 (216)
106 COG0283 Cmk Cytidylate kinase 97.1 0.00047 1.2E-08 47.2 3.4 27 82-108 3-29 (222)
107 PRK00889 adenylylsulfate kinas 97.1 0.0011 2.9E-08 44.7 5.3 42 81-123 2-43 (175)
108 cd03260 ABC_PstB_phosphate_tra 97.1 0.002 5E-08 43.1 6.5 73 85-157 28-127 (227)
109 cd03244 ABCC_MRP_domain2 Domai 97.1 0.001 2.7E-08 44.9 5.0 48 85-132 32-97 (221)
110 PRK11124 artP arginine transpo 97.1 0.00068 1.7E-08 46.2 4.0 109 85-194 30-167 (242)
111 PRK13768 GTPase; Provisional 97.1 0.0013 3.2E-08 44.4 5.4 99 82-185 1-112 (253)
112 PRK10744 phosphate transporter 97.1 0.004 1E-07 40.9 8.0 25 85-109 38-62 (257)
113 cd03252 ABCC_Hemolysin The ABC 97.1 0.00048 1.2E-08 47.2 3.2 48 85-132 30-95 (237)
114 PRK03846 adenylylsulfate kinas 97.1 0.0012 3.1E-08 44.5 5.2 42 81-123 22-63 (198)
115 cd03289 ABCC_CFTR2 The CFTR su 97.0 0.00089 2.3E-08 45.4 4.3 48 85-132 32-96 (275)
116 TIGR00017 cmk cytidylate kinas 97.0 0.00041 1E-08 47.7 2.5 135 83-238 2-164 (223)
117 TIGR00958 3a01208 antigen pept 97.0 0.00085 2.2E-08 45.5 4.0 35 85-123 561-595 (770)
118 cd03288 ABCC_SUR2 The SUR doma 97.0 0.0012 3.2E-08 44.4 4.8 75 85-161 49-146 (257)
119 pfam07693 KAP_NTPase KAP famil 97.0 0.0031 8E-08 41.7 6.8 57 69-127 7-63 (301)
120 COG1132 MdlB ABC-type multidru 97.0 0.0011 2.7E-08 44.9 4.4 106 84-194 356-491 (567)
121 cd03293 ABC_NrtD_SsuB_transpor 97.0 0.0021 5.2E-08 42.9 5.7 103 85-194 32-157 (220)
122 PRK02496 adk adenylate kinase; 97.0 0.0061 1.6E-07 39.7 8.1 157 88-306 6-174 (185)
123 cd03245 ABCC_bacteriocin_expor 97.0 0.00056 1.4E-08 46.7 2.7 48 85-132 32-97 (220)
124 PRK11545 gntK gluconate kinase 97.0 0.011 2.8E-07 38.0 9.3 40 81-126 6-45 (177)
125 pfam01583 APS_kinase Adenylyls 96.9 0.0015 3.8E-08 43.9 4.7 41 82-123 1-41 (157)
126 cd03297 ABC_ModC_molybdenum_tr 96.9 0.0024 6.1E-08 42.5 5.7 45 85-129 25-91 (214)
127 TIGR03575 selen_PSTK_euk L-ser 96.9 0.0016 4.2E-08 43.6 4.5 145 88-237 4-175 (340)
128 COG0125 Tmk Thymidylate kinase 96.9 0.029 7.4E-07 35.1 10.9 139 82-239 2-150 (208)
129 TIGR01143 murF UDP-N-acetylmur 96.9 0.0021 5.3E-08 42.9 5.0 59 60-123 61-123 (462)
130 TIGR01842 type_I_sec_PrtD type 96.9 0.00065 1.7E-08 46.3 2.4 34 85-124 358-393 (556)
131 cd02021 GntK Gluconate kinase 96.9 0.0049 1.2E-07 40.4 6.9 36 85-126 1-36 (150)
132 cd03246 ABCC_Protease_Secretio 96.8 0.0011 2.7E-08 44.8 3.4 24 85-108 30-53 (173)
133 PRK13634 cbiO cobalt transport 96.8 0.0029 7.3E-08 41.9 5.4 24 85-108 22-45 (276)
134 TIGR01420 pilT_fam twitching m 96.8 0.001 2.6E-08 44.9 3.1 41 85-128 129-173 (350)
135 cd01428 ADK Adenylate kinase ( 96.8 0.014 3.6E-07 37.2 8.9 170 86-304 2-192 (194)
136 cd03228 ABCC_MRP_Like The MRP 96.8 0.0013 3.3E-08 44.2 3.6 24 85-108 30-53 (171)
137 PRK10247 putative ABC transpor 96.8 0.0023 5.8E-08 42.6 4.8 24 85-108 35-58 (225)
138 KOG0057 consensus 96.8 0.0042 1.1E-07 40.8 6.1 61 86-150 381-458 (591)
139 cd03217 ABC_FeS_Assembly ABC-t 96.7 0.00046 1.2E-08 47.3 1.0 73 85-157 28-101 (200)
140 PRK11264 putative amino-acid A 96.7 0.0035 9E-08 41.3 5.4 108 85-194 29-168 (248)
141 PRK09518 bifunctional cytidyla 96.7 0.0015 3.8E-08 43.8 3.5 26 83-108 4-29 (714)
142 PRK13477 bifunctional pantoate 96.7 0.0012 3.2E-08 44.4 3.0 38 81-125 283-320 (512)
143 PRK10522 multidrug transporter 96.7 0.0018 4.5E-08 43.4 3.8 68 85-161 351-436 (547)
144 PRK09825 idnK D-gluconate kina 96.7 0.012 3.1E-07 37.7 8.1 37 86-128 6-42 (176)
145 PRK00698 tmk thymidylate kinas 96.7 0.016 4.1E-07 36.9 8.6 130 85-237 5-148 (204)
146 PRK10751 molybdopterin-guanine 96.7 0.0031 8E-08 41.7 5.0 37 85-122 4-40 (170)
147 COG1123 ATPase components of v 96.7 0.0011 2.9E-08 44.7 2.7 24 85-108 319-342 (539)
148 TIGR02203 MsbA_lipidA lipid A 96.7 0.001 2.5E-08 45.0 2.4 69 85-157 390-478 (603)
149 COG0563 Adk Adenylate kinase a 96.7 0.0017 4.4E-08 43.4 3.4 120 86-239 3-129 (178)
150 PRK11022 dppD dipeptide transp 96.7 0.0014 3.6E-08 44.0 3.0 24 85-108 35-58 (327)
151 cd03247 ABCC_cytochrome_bd The 96.7 0.0023 5.9E-08 42.6 4.0 24 85-108 30-53 (178)
152 TIGR02204 MsbA_rel ABC transpo 96.6 0.0019 4.9E-08 43.1 3.5 68 85-160 368-465 (576)
153 PRK13631 cbiO cobalt transport 96.6 0.0065 1.7E-07 39.5 6.2 25 85-109 54-78 (320)
154 PRK13540 cytochrome c biogenes 96.6 0.0032 8.2E-08 41.6 4.6 24 85-108 29-52 (200)
155 TIGR02525 plasmid_TraJ plasmid 96.6 0.0018 4.6E-08 43.3 3.3 125 87-219 153-316 (374)
156 KOG0780 consensus 96.6 0.0072 1.8E-07 39.2 6.3 97 17-128 40-144 (483)
157 TIGR02868 CydC ABC transporter 96.6 0.0018 4.5E-08 43.3 3.2 69 86-161 390-482 (566)
158 COG0529 CysC Adenylylsulfate k 96.6 0.0046 1.2E-07 40.6 5.3 54 80-142 20-73 (197)
159 COG1124 DppF ABC-type dipeptid 96.6 0.0012 3E-08 44.5 2.2 26 85-110 35-60 (252)
160 PRK05537 bifunctional sulfate 96.6 0.0046 1.2E-07 40.5 5.1 89 22-141 350-442 (568)
161 TIGR03375 type_I_sec_LssB type 96.6 0.00085 2.2E-08 45.5 1.3 103 85-193 493-626 (694)
162 PRK11831 putative ABC transpor 96.6 0.0059 1.5E-07 39.8 5.5 24 85-108 36-59 (269)
163 cd02030 NDUO42 NADH:Ubiquinone 96.6 0.0017 4.3E-08 43.5 2.8 24 85-108 1-24 (219)
164 pfam03029 ATP_bind_1 Conserved 96.6 0.003 7.6E-08 41.8 4.0 92 88-185 1-105 (234)
165 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.6 0.0061 1.6E-07 39.7 5.6 74 84-158 31-129 (218)
166 pfam06414 Zeta_toxin Zeta toxi 96.5 0.0042 1.1E-07 40.8 4.7 42 79-123 8-49 (191)
167 PRK10419 nikE nickel transport 96.5 0.002 5E-08 43.0 3.0 22 85-106 40-61 (266)
168 cd03299 ABC_ModC_like Archeal 96.5 0.005 1.3E-07 40.3 5.0 103 85-194 27-155 (235)
169 TIGR01447 recD exodeoxyribonuc 96.5 0.0022 5.6E-08 42.7 3.2 134 44-194 205-358 (753)
170 PRK00131 aroK shikimate kinase 96.5 0.0079 2E-07 39.0 6.0 23 86-108 7-29 (175)
171 PRK10418 nikD nickel transport 96.5 0.0053 1.3E-07 40.1 5.1 24 85-108 31-54 (254)
172 cd03261 ABC_Org_Solvent_Resist 96.5 0.0075 1.9E-07 39.1 5.8 23 85-107 28-50 (235)
173 PRK13643 cbiO cobalt transport 96.5 0.0081 2.1E-07 38.9 6.0 104 85-194 34-170 (288)
174 PRK12339 2-phosphoglycerate ki 96.5 0.0031 7.9E-08 41.7 3.9 137 82-252 2-152 (197)
175 PRK00300 gmk guanylate kinase; 96.5 0.005 1.3E-07 40.3 4.9 126 81-237 5-140 (208)
176 cd03369 ABCC_NFT1 Domain 2 of 96.5 0.0035 9E-08 41.3 4.1 24 85-108 36-59 (207)
177 COG1428 Deoxynucleoside kinase 96.5 0.0022 5.7E-08 42.7 3.1 38 84-123 5-42 (216)
178 TIGR03608 L_ocin_972_ABC putat 96.5 0.0084 2.1E-07 38.8 6.0 23 85-107 26-48 (206)
179 PRK13640 cbiO cobalt transport 96.5 0.0035 9E-08 41.3 4.1 106 85-197 36-173 (283)
180 KOG1970 consensus 96.5 0.023 5.8E-07 35.8 8.2 63 85-157 112-178 (634)
181 PRK00279 adk adenylate kinase; 96.5 0.027 6.8E-07 35.4 8.5 176 86-306 3-204 (215)
182 smart00382 AAA ATPases associa 96.5 0.014 3.6E-07 37.3 7.0 40 84-124 3-42 (148)
183 cd03294 ABC_Pro_Gly_Bertaine T 96.5 0.01 2.6E-07 38.3 6.3 103 85-194 52-186 (269)
184 PRK12269 bifunctional cytidyla 96.5 0.0026 6.6E-08 42.2 3.2 26 83-108 34-59 (863)
185 CHL00181 cbbX CbbX; Provisiona 96.5 0.026 6.5E-07 35.5 8.3 72 40-121 26-98 (287)
186 PRK13695 putative NTPase; Prov 96.5 0.0015 3.8E-08 43.8 1.9 37 82-124 2-38 (174)
187 TIGR03018 pepcterm_TyrKin exop 96.4 0.021 5.2E-07 36.1 7.7 68 59-127 11-79 (207)
188 cd03263 ABC_subfamily_A The AB 96.4 0.0084 2.1E-07 38.8 5.7 109 85-194 30-159 (220)
189 COG1936 Predicted nucleotide k 96.4 0.0024 6.2E-08 42.4 3.0 58 85-157 2-64 (180)
190 cd03256 ABC_PhnC_transporter A 96.4 0.0052 1.3E-07 40.2 4.6 24 85-108 29-52 (241)
191 TIGR03263 guanyl_kin guanylate 96.4 0.0065 1.7E-07 39.5 5.1 125 85-237 3-133 (180)
192 TIGR02211 LolD_lipo_ex lipopro 96.4 0.002 5.1E-08 43.0 2.4 36 85-124 33-68 (221)
193 PRK13900 type IV secretion sys 96.4 0.011 2.9E-07 37.9 6.3 88 17-118 105-193 (332)
194 PRK13633 cobalt transporter AT 96.4 0.0016 4E-08 43.7 1.8 24 85-108 39-62 (281)
195 PRK10535 macrolide transporter 96.4 0.011 2.8E-07 38.0 6.2 24 85-108 36-59 (648)
196 PRK13635 cbiO cobalt transport 96.4 0.0016 4.2E-08 43.6 1.9 103 85-194 35-166 (279)
197 pfam03205 MobB Molybdopterin g 96.4 0.0076 1.9E-07 39.1 5.2 36 85-121 2-38 (122)
198 pfam04665 Pox_A32 Poxvirus A32 96.4 0.0062 1.6E-07 39.7 4.6 49 79-129 9-64 (241)
199 cd02027 APSK Adenosine 5'-phos 96.3 0.0042 1.1E-07 40.8 3.6 38 85-123 1-38 (149)
200 PRK10584 putative ABC transpor 96.3 0.0032 8.1E-08 41.6 3.0 24 85-108 38-61 (228)
201 PRK06761 hypothetical protein; 96.3 0.0075 1.9E-07 39.1 4.8 35 85-120 4-38 (281)
202 TIGR01193 bacteriocin_ABC ABC- 96.3 0.0024 6.1E-08 42.5 2.3 38 85-126 502-541 (710)
203 cd03257 ABC_NikE_OppD_transpor 96.3 0.0018 4.6E-08 43.3 1.6 24 85-108 33-56 (228)
204 TIGR02769 nickel_nikE nickel i 96.3 0.0023 5.8E-08 42.6 2.1 73 85-157 40-138 (267)
205 PRK13644 cbiO cobalt transport 96.3 0.0022 5.6E-08 42.7 2.0 24 85-108 30-53 (274)
206 COG1136 SalX ABC-type antimicr 96.3 0.0049 1.3E-07 40.4 3.8 46 85-131 33-78 (226)
207 TIGR00972 3a0107s01c2 phosphat 96.3 0.008 2E-07 38.9 4.9 38 85-122 29-67 (248)
208 PRK13646 cbiO cobalt transport 96.3 0.0037 9.4E-08 41.2 3.1 25 85-109 35-59 (286)
209 KOG3062 consensus 96.3 0.082 2.1E-06 32.1 10.0 117 85-237 3-122 (281)
210 KOG0058 consensus 96.3 0.0055 1.4E-07 40.0 3.9 36 85-124 496-531 (716)
211 TIGR02881 spore_V_K stage V sp 96.2 0.018 4.6E-07 36.6 6.5 69 27-111 2-70 (261)
212 PRK13651 cobalt transporter AT 96.2 0.0037 9.3E-08 41.2 2.9 24 85-108 35-58 (304)
213 TIGR01192 chvA glucan exporter 96.2 0.0047 1.2E-07 40.5 3.4 107 84-194 362-497 (592)
214 PRK00091 miaA tRNA delta(2)-is 96.2 0.0057 1.4E-07 39.9 3.9 68 83-156 4-84 (304)
215 pfam00406 ADK Adenylate kinase 96.2 0.025 6.4E-07 35.5 7.2 114 88-239 1-124 (186)
216 COG0324 MiaA tRNA delta(2)-iso 96.2 0.016 4E-07 36.9 6.1 71 82-158 2-85 (308)
217 COG1855 ATPase (PilT family) [ 96.2 0.005 1.3E-07 40.3 3.5 27 85-111 265-291 (604)
218 PRK13648 cbiO cobalt transport 96.2 0.0048 1.2E-07 40.4 3.4 24 85-108 37-60 (269)
219 PRK11629 lolD lipoprotein tran 96.2 0.0036 9.3E-08 41.2 2.8 23 85-107 37-59 (233)
220 PRK13808 adenylate kinase; Pro 96.2 0.037 9.4E-07 34.4 7.9 137 86-256 3-151 (297)
221 cd00984 DnaB_C DnaB helicase C 96.2 0.026 6.6E-07 35.5 7.1 110 85-201 15-138 (242)
222 cd03223 ABCD_peroxisomal_ALDP 96.2 0.0053 1.3E-07 40.1 3.6 24 85-108 29-52 (166)
223 pfam03215 Rad17 Rad17 cell cyc 96.2 0.044 1.1E-06 33.9 8.3 34 71-108 37-70 (490)
224 cd00227 CPT Chloramphenicol (C 96.2 0.0047 1.2E-07 40.5 3.3 36 85-124 4-39 (175)
225 PRK13642 cbiO cobalt transport 96.2 0.0021 5.4E-08 42.8 1.5 103 85-194 35-166 (277)
226 PRK11308 dppF dipeptide transp 96.2 0.003 7.6E-08 41.8 2.2 23 85-107 43-65 (327)
227 PRK13976 thymidylate kinase; P 96.2 0.071 1.8E-06 32.5 9.2 129 85-233 2-141 (202)
228 cd03259 ABC_Carb_Solutes_like 96.2 0.013 3.3E-07 37.5 5.4 104 85-194 28-156 (213)
229 PRK13545 tagH teichoic acids e 96.2 0.0029 7.4E-08 41.9 2.1 168 85-270 52-255 (549)
230 pfam03266 DUF265 Protein of un 96.2 0.0047 1.2E-07 40.5 3.2 33 86-124 2-34 (168)
231 COG1763 MobB Molybdopterin-gua 96.1 0.011 2.8E-07 37.9 5.0 39 83-122 2-40 (161)
232 PRK13632 cbiO cobalt transport 96.1 0.0026 6.7E-08 42.2 1.8 103 85-194 38-169 (273)
233 TIGR02788 VirB11 P-type DNA tr 96.1 0.0063 1.6E-07 39.6 3.7 56 70-130 147-207 (328)
234 PRK00625 shikimate kinase; Pro 96.1 0.016 4.2E-07 36.8 5.8 32 86-123 3-34 (173)
235 PRK13650 cbiO cobalt transport 96.1 0.0027 7E-08 42.1 1.8 103 85-194 32-163 (276)
236 PRK13641 cbiO cobalt transport 96.1 0.0044 1.1E-07 40.7 2.8 24 85-108 35-58 (286)
237 CHL00131 ycf16 sulfate ABC tra 96.1 0.0064 1.6E-07 39.6 3.6 21 85-105 34-54 (252)
238 cd03226 ABC_cobalt_CbiO_domain 96.1 0.0034 8.6E-08 41.5 2.2 24 85-108 28-51 (205)
239 pfam07931 CPT Chloramphenicol 96.1 0.0056 1.4E-07 40.0 3.3 36 85-124 3-38 (174)
240 KOG1533 consensus 96.1 0.0077 2E-07 39.0 4.0 39 82-121 1-39 (290)
241 PRK09473 oppD oligopeptide tra 96.1 0.0027 7E-08 42.1 1.7 24 85-108 44-67 (330)
242 TIGR03415 ABC_choXWV_ATP choli 96.1 0.024 6.2E-07 35.7 6.5 23 85-107 52-74 (382)
243 cd03296 ABC_CysA_sulfate_impor 96.1 0.0052 1.3E-07 40.2 3.0 43 85-127 30-88 (239)
244 PRK10619 histidine/lysine/argi 96.1 0.0045 1.1E-07 40.6 2.7 23 85-107 33-55 (257)
245 pfam06309 Torsin Torsin. This 96.1 0.036 9.2E-07 34.5 7.3 73 50-123 21-96 (127)
246 COG1618 Predicted nucleotide k 96.0 0.014 3.6E-07 37.3 5.1 30 81-110 3-32 (179)
247 PTZ00265 multidrug resistance 96.0 0.0067 1.7E-07 39.5 3.5 21 85-105 413-433 (1467)
248 cd03278 ABC_SMC_barmotin Barmo 96.0 0.0059 1.5E-07 39.8 3.2 23 85-107 24-46 (197)
249 PRK05506 bifunctional sulfate 96.0 0.015 3.8E-07 37.1 5.2 52 81-141 441-492 (613)
250 PRK13639 cbiO cobalt transport 96.0 0.0061 1.5E-07 39.7 3.3 24 85-108 30-53 (275)
251 cd03295 ABC_OpuCA_Osmoprotecti 96.0 0.006 1.5E-07 39.8 3.2 73 85-157 29-121 (242)
252 COG0444 DppD ABC-type dipeptid 96.0 0.0079 2E-07 39.0 3.7 24 85-108 33-56 (316)
253 PRK13649 cbiO cobalt transport 96.0 0.0056 1.4E-07 40.0 3.0 24 85-108 35-58 (280)
254 PRK13637 cbiO cobalt transport 96.0 0.0029 7.4E-08 41.9 1.5 24 85-108 35-58 (287)
255 PTZ00265 multidrug resistance 96.0 0.0058 1.5E-07 39.9 3.0 23 86-108 1198-1220(1467)
256 TIGR01186 proV glycine betaine 96.0 0.006 1.5E-07 39.8 3.1 107 85-203 21-165 (372)
257 pfam00437 GSPII_E Type II/IV s 96.0 0.0095 2.4E-07 38.4 4.1 46 68-118 126-173 (283)
258 cd03292 ABC_FtsE_transporter F 96.0 0.0066 1.7E-07 39.5 3.3 23 85-107 29-51 (214)
259 PRK13764 ATPase; Provisional 96.0 0.0074 1.9E-07 39.1 3.5 25 85-109 261-285 (605)
260 PRK10771 thiQ thiamine transpo 96.0 0.0066 1.7E-07 39.5 3.2 43 85-127 27-85 (233)
261 TIGR03258 PhnT 2-aminoethylpho 96.0 0.016 4E-07 36.9 5.2 103 85-194 33-163 (362)
262 TIGR02324 CP_lyasePhnL phospho 96.0 0.0097 2.5E-07 38.3 4.1 36 85-123 36-72 (224)
263 cd01882 BMS1 Bms1. Bms1 is an 96.0 0.0073 1.9E-07 39.2 3.4 42 79-120 35-80 (225)
264 TIGR02770 nickel_nikD nickel i 96.0 0.0068 1.7E-07 39.4 3.2 41 84-125 13-54 (239)
265 PRK09493 glnQ glutamine ABC tr 96.0 0.0055 1.4E-07 40.0 2.7 23 85-107 29-51 (240)
266 PRK07933 thymidylate kinase; V 96.0 0.11 2.8E-06 31.2 9.4 138 85-237 2-153 (213)
267 TIGR03346 chaperone_ClpB ATP-d 95.9 0.057 1.5E-06 33.1 7.9 45 73-121 585-630 (852)
268 cd03262 ABC_HisP_GlnQ_permease 95.9 0.007 1.8E-07 39.3 3.2 23 85-107 28-50 (213)
269 COG4618 ArpD ABC-type protease 95.9 0.0053 1.4E-07 40.1 2.6 34 85-124 364-399 (580)
270 KOG0055 consensus 95.9 0.0087 2.2E-07 38.7 3.7 36 85-124 381-416 (1228)
271 TIGR03269 met_CoM_red_A2 methy 95.9 0.0035 8.9E-08 41.4 1.6 23 85-107 312-334 (520)
272 PRK10070 glycine betaine trans 95.9 0.0061 1.5E-07 39.7 2.8 24 85-108 56-79 (400)
273 cd03258 ABC_MetN_methionine_tr 95.9 0.0038 9.7E-08 41.1 1.8 23 85-107 33-55 (233)
274 cd03236 ABC_RNaseL_inhibitor_d 95.9 0.0035 9E-08 41.3 1.6 24 85-108 28-51 (255)
275 pfam03796 DnaB_C DnaB-like hel 95.9 0.051 1.3E-06 33.5 7.5 111 85-202 21-145 (186)
276 TIGR03522 GldA_ABC_ATP gliding 95.9 0.0069 1.8E-07 39.3 3.1 108 85-194 30-159 (301)
277 KOG3079 consensus 95.9 0.053 1.3E-06 33.4 7.6 153 79-283 4-165 (195)
278 TIGR01313 therm_gnt_kin carboh 95.9 0.0054 1.4E-07 40.1 2.5 114 88-237 3-125 (175)
279 TIGR00101 ureG urease accessor 95.9 0.013 3.4E-07 37.4 4.5 148 84-241 2-166 (199)
280 PRK10261 glutathione transport 95.9 0.0035 9E-08 41.3 1.5 23 85-107 352-374 (623)
281 PRK11153 metN DL-methionine tr 95.9 0.0086 2.2E-07 38.7 3.5 23 85-107 33-55 (343)
282 cd03298 ABC_ThiQ_thiamine_tran 95.9 0.022 5.7E-07 35.9 5.6 72 85-157 26-116 (211)
283 PRK11701 phnK phosphonates tra 95.9 0.0044 1.1E-07 40.7 1.9 24 85-108 34-57 (258)
284 pfam02374 ArsA_ATPase Anion-tr 95.9 0.018 4.6E-07 36.5 5.1 40 85-125 3-42 (304)
285 PRK11248 tauB taurine transpor 95.8 0.0059 1.5E-07 39.8 2.5 71 85-157 29-116 (255)
286 KOG1384 consensus 95.8 0.0036 9.1E-08 41.3 1.4 170 85-275 9-196 (348)
287 cd03267 ABC_NatA_like Similar 95.8 0.016 4.1E-07 36.9 4.6 24 85-108 49-72 (236)
288 TIGR00602 rad24 checkpoint pro 95.8 0.015 3.8E-07 37.1 4.4 37 70-107 106-142 (670)
289 COG1126 GlnQ ABC-type polar am 95.8 0.0092 2.3E-07 38.5 3.3 100 85-194 30-162 (240)
290 PRK13851 type IV secretion sys 95.8 0.012 3.2E-07 37.6 4.0 45 70-119 151-196 (343)
291 PRK13549 xylose transporter AT 95.8 0.0073 1.9E-07 39.2 2.7 23 85-107 290-312 (513)
292 PRK11000 maltose/maltodextrin 95.8 0.017 4.2E-07 36.8 4.5 112 85-203 31-168 (369)
293 COG2804 PulE Type II secretory 95.8 0.015 3.9E-07 37.0 4.3 36 82-120 256-292 (500)
294 cd02035 ArsA ArsA ATPase funct 95.8 0.016 4.2E-07 36.8 4.5 37 85-122 1-37 (217)
295 cd03213 ABCG_EPDR ABCG transpo 95.8 0.0099 2.5E-07 38.3 3.3 38 85-124 37-74 (194)
296 PRK10078 ribose 1,5-bisphospho 95.7 0.026 6.5E-07 35.5 5.4 122 85-237 4-131 (184)
297 TIGR00176 mobB molybdopterin-g 95.7 0.015 3.8E-07 37.1 4.2 99 85-202 1-112 (165)
298 KOG0055 consensus 95.7 0.014 3.5E-07 37.4 4.0 36 85-124 1018-1053(1228)
299 PTZ00243 ABC transporter; Prov 95.7 0.026 6.7E-07 35.4 5.5 42 85-129 688-737 (1560)
300 cd03225 ABC_cobalt_CbiO_domain 95.7 0.0066 1.7E-07 39.5 2.4 73 85-157 29-122 (211)
301 PRK11247 ssuB aliphatic sulfon 95.7 0.0044 1.1E-07 40.7 1.4 24 85-108 40-63 (257)
302 COG4608 AppF ABC-type oligopep 95.7 0.0053 1.4E-07 40.1 1.9 24 85-108 41-64 (268)
303 cd03231 ABC_CcmA_heme_exporter 95.7 0.0054 1.4E-07 40.1 1.9 25 85-109 28-52 (201)
304 cd03269 ABC_putative_ATPase Th 95.7 0.03 7.6E-07 35.0 5.7 111 84-194 27-154 (210)
305 PRK13645 cbiO cobalt transport 95.7 0.005 1.3E-07 40.3 1.6 24 85-108 39-62 (289)
306 cd00550 ArsA_ATPase Oxyanion-t 95.7 0.022 5.7E-07 35.9 5.0 39 85-124 2-40 (254)
307 PRK10436 hypothetical protein; 95.7 0.018 4.5E-07 36.6 4.5 33 85-120 217-249 (461)
308 PRK13652 cbiO cobalt transport 95.7 0.0095 2.4E-07 38.4 3.1 24 85-108 32-55 (277)
309 COG0552 FtsY Signal recognitio 95.7 0.026 6.7E-07 35.4 5.4 103 19-128 79-182 (340)
310 cd03266 ABC_NatA_sodium_export 95.7 0.016 4E-07 36.9 4.2 25 84-108 32-56 (218)
311 PRK10261 glutathione transport 95.7 0.0059 1.5E-07 39.8 2.0 24 85-108 44-67 (623)
312 cd02032 Bchl_like This family 95.7 0.032 8.1E-07 34.9 5.7 36 85-121 2-37 (267)
313 pfam02223 Thymidylate_kin Thym 95.7 0.11 2.7E-06 31.3 8.4 128 88-237 1-139 (186)
314 PRK09580 sufC cysteine desulfu 95.7 0.0088 2.2E-07 38.6 2.8 22 85-106 29-50 (248)
315 TIGR03269 met_CoM_red_A2 methy 95.7 0.0071 1.8E-07 39.3 2.4 19 85-103 28-46 (520)
316 smart00763 AAA_PrkA PrkA AAA d 95.7 0.035 9E-07 34.6 5.9 27 85-111 80-106 (361)
317 cd03234 ABCG_White The White s 95.6 0.0092 2.3E-07 38.5 2.8 24 84-107 34-57 (226)
318 cd03229 ABC_Class3 This class 95.6 0.0087 2.2E-07 38.7 2.6 23 85-107 28-50 (178)
319 COG1123 ATPase components of v 95.6 0.012 3.1E-07 37.7 3.4 25 85-109 37-61 (539)
320 PRK13407 bchI magnesium chelat 95.6 0.21 5.3E-06 29.3 9.9 23 86-108 32-54 (334)
321 COG0003 ArsA Predicted ATPase 95.6 0.031 7.8E-07 35.0 5.4 44 85-129 4-47 (322)
322 cd03237 ABC_RNaseL_inhibitor_d 95.6 0.0055 1.4E-07 40.0 1.6 24 85-108 27-50 (246)
323 PRK13647 cbiO cobalt transport 95.6 0.0055 1.4E-07 40.0 1.5 24 85-108 33-56 (273)
324 cd03224 ABC_TM1139_LivF_branch 95.6 0.011 2.9E-07 37.9 3.1 24 85-108 28-51 (222)
325 COG5192 BMS1 GTP-binding prote 95.6 0.036 9.1E-07 34.5 5.6 29 77-105 63-91 (1077)
326 PRK11819 putative ABC transpor 95.6 0.014 3.5E-07 37.3 3.5 42 85-126 35-83 (556)
327 PRK10895 putative ABC transpor 95.6 0.015 3.8E-07 37.1 3.6 24 85-108 31-54 (241)
328 TIGR02857 CydD ABC transporter 95.5 0.019 4.9E-07 36.4 4.2 82 85-173 380-494 (570)
329 PRK10982 galactose/methyl gala 95.5 0.0099 2.5E-07 38.3 2.7 24 85-108 276-299 (491)
330 PRK13636 cbiO cobalt transport 95.5 0.0062 1.6E-07 39.7 1.7 107 85-194 34-167 (285)
331 PRK13975 thymidylate kinase; P 95.5 0.088 2.2E-06 31.9 7.5 24 85-108 4-27 (198)
332 PRK09452 potA putrescine/sperm 95.5 0.013 3.2E-07 37.6 3.1 102 85-194 45-173 (378)
333 PRK13833 conjugal transfer pro 95.5 0.017 4.3E-07 36.7 3.8 34 85-118 146-180 (323)
334 PRK10938 putative molybdenum t 95.5 0.01 2.7E-07 38.1 2.7 19 85-103 288-306 (490)
335 TIGR00174 miaA tRNA delta(2)-i 95.5 0.013 3.3E-07 37.5 3.2 66 85-156 1-79 (307)
336 PTZ00243 ABC transporter; Prov 95.5 0.013 3.3E-07 37.5 3.1 47 86-132 1339-1403(1560)
337 PRK10865 protein disaggregatio 95.5 0.19 4.9E-06 29.6 9.1 44 74-121 589-633 (857)
338 PRK10575 iron-hydroxamate tran 95.5 0.011 2.8E-07 38.0 2.7 23 85-107 39-61 (265)
339 PRK10938 putative molybdenum t 95.5 0.011 2.7E-07 38.1 2.6 23 85-107 31-53 (490)
340 COG2805 PilT Tfp pilus assembl 95.5 0.02 5.1E-07 36.2 4.0 43 85-130 127-174 (353)
341 PRK10762 D-ribose transporter 95.5 0.011 2.9E-07 37.9 2.8 25 85-109 280-304 (501)
342 KOG2170 consensus 95.4 0.09 2.3E-06 31.8 7.3 67 42-109 70-136 (344)
343 TIGR03015 pepcterm_ATPase puta 95.4 0.13 3.3E-06 30.7 8.1 74 85-162 45-123 (269)
344 PRK13549 xylose transporter AT 95.4 0.009 2.3E-07 38.6 2.2 23 85-107 33-55 (513)
345 cd03219 ABC_Mj1267_LivG_branch 95.4 0.015 3.7E-07 37.1 3.2 24 85-108 28-51 (236)
346 COG1117 PstB ABC-type phosphat 95.4 0.027 6.8E-07 35.4 4.5 60 56-122 13-73 (253)
347 COG1131 CcmA ABC-type multidru 95.4 0.024 6E-07 35.7 4.2 25 84-108 32-56 (293)
348 cd01130 VirB11-like_ATPase Typ 95.4 0.022 5.6E-07 36.0 4.0 31 85-118 27-58 (186)
349 PRK13546 teichoic acids export 95.4 0.0073 1.9E-07 39.2 1.5 113 85-198 52-174 (264)
350 PRK11288 araG L-arabinose tran 95.4 0.012 3.1E-07 37.7 2.7 24 85-108 281-304 (501)
351 cd03215 ABC_Carb_Monos_II This 95.4 0.012 3E-07 37.8 2.5 24 85-108 28-51 (182)
352 PRK06067 flagellar accessory p 95.4 0.033 8.5E-07 34.7 4.9 41 80-122 29-70 (241)
353 PRK10851 sulfate/thiosulfate t 95.4 0.0071 1.8E-07 39.3 1.4 44 85-128 30-89 (352)
354 pfam01580 FtsK_SpoIIIE FtsK/Sp 95.4 0.084 2.2E-06 32.0 6.9 70 86-159 41-112 (202)
355 cd03301 ABC_MalK_N The N-termi 95.3 0.015 3.8E-07 37.1 3.1 103 85-194 28-156 (213)
356 PRK10908 cell division protein 95.3 0.007 1.8E-07 39.3 1.4 24 85-108 30-53 (222)
357 cd03222 ABC_RNaseL_inhibitor T 95.3 0.0085 2.2E-07 38.8 1.8 27 83-109 25-51 (177)
358 PRK11288 araG L-arabinose tran 95.3 0.0071 1.8E-07 39.3 1.4 20 85-104 32-51 (501)
359 PRK13974 thymidylate kinase; P 95.3 0.11 2.8E-06 31.2 7.5 133 85-235 5-153 (212)
360 pfam05049 IIGP Interferon-indu 95.3 0.023 5.8E-07 35.8 4.0 41 64-106 18-58 (375)
361 pfam08298 AAA_PrkA PrkA AAA do 95.3 0.06 1.5E-06 33.0 6.1 54 45-111 60-113 (358)
362 PRK09984 phosphonate/organopho 95.3 0.0097 2.5E-07 38.3 2.0 23 85-107 32-54 (262)
363 cd03300 ABC_PotA_N PotA is an 95.3 0.014 3.4E-07 37.4 2.8 73 85-158 28-119 (232)
364 cd00544 CobU Adenosylcobinamid 95.3 0.025 6.4E-07 35.6 4.1 89 85-202 1-89 (169)
365 COG4619 ABC-type uncharacteriz 95.3 0.0098 2.5E-07 38.3 2.0 103 85-194 31-159 (223)
366 PRK11432 fbpC ferric transport 95.3 0.013 3.4E-07 37.4 2.7 103 85-194 34-162 (351)
367 cd01131 PilT Pilus retraction 95.3 0.027 7E-07 35.3 4.3 35 85-122 3-38 (198)
368 PRK11300 livG leucine/isoleuci 95.3 0.017 4.3E-07 36.8 3.2 24 85-108 33-56 (255)
369 TIGR03453 partition_RepA plasm 95.3 0.076 1.9E-06 32.3 6.5 49 70-121 91-142 (387)
370 PRK13638 cbiO cobalt transport 95.3 0.017 4.4E-07 36.6 3.2 24 85-108 29-52 (271)
371 COG4988 CydD ABC-type transpor 95.3 0.015 3.7E-07 37.1 2.8 95 39-133 254-415 (559)
372 PRK11147 ABC transporter ATPas 95.3 0.013 3.4E-07 37.4 2.6 24 85-108 347-370 (632)
373 pfam01202 SKI Shikimate kinase 95.3 0.041 1E-06 34.1 5.1 27 92-124 1-27 (158)
374 PRK11650 ugpC glycerol-3-phosp 95.3 0.015 3.9E-07 37.0 2.9 103 85-194 32-160 (358)
375 PRK11614 livF leucine/isoleuci 95.2 0.015 3.9E-07 37.0 2.8 23 85-107 33-55 (237)
376 PRK09700 D-allose transporter 95.2 0.014 3.6E-07 37.2 2.7 25 84-108 290-314 (510)
377 PRK13548 hmuV hemin importer A 95.2 0.011 2.8E-07 38.0 2.1 24 85-108 30-53 (257)
378 COG4598 HisP ABC-type histidin 95.2 0.017 4.3E-07 36.7 3.0 28 81-109 30-57 (256)
379 PRK09302 circadian clock prote 95.2 0.083 2.1E-06 32.1 6.5 35 85-121 26-62 (501)
380 TIGR02068 cya_phycin_syn cyano 95.2 0.039 1E-06 34.3 4.9 45 77-125 483-527 (876)
381 PRK13538 cytochrome c biogenes 95.2 0.0098 2.5E-07 38.3 1.8 24 85-108 29-52 (204)
382 PRK11819 putative ABC transpor 95.2 0.0097 2.5E-07 38.4 1.7 24 85-108 352-375 (556)
383 PRK04328 hypothetical protein; 95.2 0.041 1E-06 34.1 4.9 38 82-121 23-61 (250)
384 PRK13543 cytochrome c biogenes 95.2 0.021 5.3E-07 36.1 3.4 24 85-108 39-62 (214)
385 TIGR02442 Cob-chelat-sub cobal 95.2 0.049 1.2E-06 33.6 5.2 22 86-107 28-49 (688)
386 TIGR00345 arsA arsenite-activa 95.2 0.025 6.5E-07 35.5 3.8 37 88-124 2-39 (330)
387 cd02040 NifH NifH gene encodes 95.2 0.041 1E-06 34.1 4.8 36 85-121 3-38 (270)
388 cd03214 ABC_Iron-Siderophores_ 95.2 0.017 4.4E-07 36.7 2.9 24 85-108 27-50 (180)
389 PRK09544 znuC high-affinity zi 95.2 0.01 2.7E-07 38.1 1.8 24 85-108 32-55 (251)
390 cd01124 KaiC KaiC is a circadi 95.1 0.028 7.2E-07 35.2 4.0 34 87-122 3-37 (187)
391 TIGR02315 ABC_phnC phosphonate 95.1 0.016 4.1E-07 36.9 2.7 143 85-242 30-230 (253)
392 PRK10762 D-ribose transporter 95.1 0.011 2.9E-07 37.9 1.9 22 85-106 32-53 (501)
393 pfam00931 NB-ARC NB-ARC domain 95.1 0.016 4.2E-07 36.8 2.7 23 82-104 18-40 (285)
394 COG0194 Gmk Guanylate kinase [ 95.1 0.022 5.7E-07 35.9 3.4 128 82-237 3-135 (191)
395 PRK11147 ABC transporter ATPas 95.1 0.011 2.7E-07 38.1 1.7 23 85-107 31-53 (632)
396 PRK13547 hmuV hemin importer A 95.1 0.016 4E-07 37.0 2.6 24 85-108 29-52 (273)
397 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 95.1 0.011 2.8E-07 38.0 1.8 107 85-194 50-168 (224)
398 cd01983 Fer4_NifH The Fer4_Nif 95.1 0.034 8.7E-07 34.7 4.3 34 85-119 1-34 (99)
399 cd03235 ABC_Metallic_Cations A 95.1 0.012 3E-07 37.8 1.8 24 85-108 27-50 (213)
400 KOG3347 consensus 95.1 0.019 4.8E-07 36.4 2.9 64 81-159 6-74 (176)
401 COG2019 AdkA Archaeal adenylat 95.1 0.038 9.6E-07 34.4 4.4 26 82-107 3-28 (189)
402 PRK10636 putative ABC transpor 95.1 0.016 4.1E-07 36.9 2.5 24 85-108 340-363 (638)
403 PRK10253 iron-enterobactin tra 95.0 0.02 5.1E-07 36.2 2.9 24 85-108 35-58 (265)
404 PRK04195 replication factor C 95.0 0.078 2E-06 32.2 6.0 23 85-107 42-64 (403)
405 PRK13544 consensus 95.0 0.037 9.5E-07 34.4 4.3 25 84-108 28-52 (208)
406 PRK13230 nitrogenase reductase 95.0 0.041 1E-06 34.1 4.5 36 85-121 3-38 (292)
407 cd04104 p47_IIGP_like p47 (47- 95.0 0.021 5.4E-07 36.1 3.0 24 83-106 1-24 (197)
408 cd01129 PulE-GspE PulE/GspE Th 95.0 0.037 9.5E-07 34.4 4.3 33 85-120 82-114 (264)
409 cd03216 ABC_Carb_Monos_I This 95.0 0.013 3.3E-07 37.5 1.9 25 84-108 27-51 (163)
410 PRK13894 conjugal transfer ATP 95.0 0.027 6.9E-07 35.3 3.5 34 85-118 151-185 (320)
411 PRK13233 nifH nitrogenase redu 95.0 0.044 1.1E-06 33.9 4.5 39 85-123 4-42 (275)
412 PRK03695 vitamin B12-transport 95.0 0.018 4.6E-07 36.5 2.6 23 85-107 25-47 (245)
413 PRK11607 potG putrescine trans 95.0 0.022 5.5E-07 36.0 3.0 23 85-107 47-69 (377)
414 pfam00142 Fer4_NifH 4Fe-4S iro 94.9 0.053 1.4E-06 33.4 4.9 37 85-122 2-38 (269)
415 COG3640 CooC CO dehydrogenase 94.9 0.051 1.3E-06 33.5 4.8 37 85-122 2-39 (255)
416 COG1135 AbcC ABC-type metal io 94.9 0.037 9.4E-07 34.4 4.1 46 85-131 34-79 (339)
417 PRK09361 radB DNA repair and r 94.9 0.06 1.5E-06 33.0 5.1 51 71-124 13-63 (224)
418 PRK11331 5-methylcytosine-spec 94.9 0.084 2.1E-06 32.0 5.8 71 47-120 157-232 (459)
419 PRK10636 putative ABC transpor 94.9 0.019 4.7E-07 36.5 2.4 23 85-107 29-51 (638)
420 PRK05800 cobU adenosylcobinami 94.9 0.048 1.2E-06 33.6 4.6 34 85-121 3-36 (170)
421 COG1341 Predicted GTPase or GT 94.9 0.059 1.5E-06 33.0 5.0 41 79-121 69-110 (398)
422 TIGR03411 urea_trans_UrtD urea 94.8 0.029 7.5E-07 35.1 3.4 24 85-108 30-53 (242)
423 cd00267 ABC_ATPase ABC (ATP-bi 94.8 0.015 3.9E-07 37.0 2.0 23 85-107 27-49 (157)
424 PRK11231 fecE iron-dicitrate t 94.8 0.014 3.5E-07 37.3 1.7 24 85-108 30-53 (255)
425 cd03268 ABC_BcrA_bacitracin_re 94.8 0.046 1.2E-06 33.7 4.4 25 84-108 27-51 (208)
426 PRK09700 D-allose transporter 94.8 0.021 5.4E-07 36.0 2.6 20 85-104 33-52 (510)
427 cd03238 ABC_UvrA The excision 94.8 0.023 5.8E-07 35.8 2.7 17 85-101 23-39 (176)
428 TIGR02538 type_IV_pilB type IV 94.8 0.016 4.1E-07 36.8 2.0 29 68-99 313-342 (577)
429 TIGR03345 VI_ClpV1 type VI sec 94.8 0.25 6.3E-06 28.8 8.0 44 74-121 587-631 (852)
430 cd03218 ABC_YhbG The ABC trans 94.8 0.025 6.5E-07 35.5 2.9 24 85-108 28-51 (232)
431 PRK11929 putative bifunctional 94.8 0.072 1.8E-06 32.4 5.3 26 84-111 592-617 (953)
432 PRK13409 putative ATPase RIL; 94.8 0.014 3.6E-07 37.2 1.6 25 85-109 367-391 (590)
433 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.8 0.024 6.2E-07 35.7 2.8 24 85-108 28-51 (144)
434 COG0467 RAD55 RecA-superfamily 94.8 0.055 1.4E-06 33.3 4.6 37 84-122 24-61 (260)
435 pfam05496 RuvB_N Holliday junc 94.8 0.031 7.9E-07 34.9 3.3 27 81-108 49-75 (234)
436 cd00071 GMPK Guanosine monopho 94.8 0.017 4.5E-07 36.6 2.0 123 85-237 1-131 (137)
437 COG1121 ZnuC ABC-type Mn/Zn tr 94.7 0.089 2.3E-06 31.8 5.6 105 84-194 31-165 (254)
438 COG4987 CydC ABC-type transpor 94.7 0.048 1.2E-06 33.7 4.2 42 86-130 367-410 (573)
439 cd03233 ABC_PDR_domain1 The pl 94.7 0.026 6.6E-07 35.5 2.8 23 85-107 35-57 (202)
440 pfam02456 Adeno_IVa2 Adenoviru 94.7 0.17 4.5E-06 29.8 7.1 67 55-123 54-129 (370)
441 COG0770 MurF UDP-N-acetylmuram 94.7 0.069 1.8E-06 32.6 5.0 26 82-109 102-127 (451)
442 PRK10982 galactose/methyl gala 94.7 0.015 3.9E-07 37.0 1.6 11 184-194 271-281 (491)
443 cd03232 ABC_PDR_domain2 The pl 94.7 0.027 6.8E-07 35.4 2.8 20 85-104 35-54 (192)
444 cd03271 ABC_UvrA_II The excisi 94.6 0.027 6.9E-07 35.3 2.7 17 85-101 23-39 (261)
445 KOG2228 consensus 94.6 0.34 8.7E-06 27.9 8.3 76 30-127 16-92 (408)
446 COG1116 TauB ABC-type nitrate/ 94.6 0.038 9.7E-07 34.3 3.5 106 85-193 31-155 (248)
447 cd03270 ABC_UvrA_I The excisio 94.6 0.02 5.2E-07 36.2 2.0 16 85-100 23-38 (226)
448 PRK13536 nodulation factor exp 94.6 0.06 1.5E-06 33.0 4.4 25 84-108 34-58 (306)
449 cd01122 GP4d_helicase GP4d_hel 94.6 0.072 1.8E-06 32.4 4.8 110 85-200 32-154 (271)
450 KOG2749 consensus 94.5 0.19 4.7E-06 29.7 6.9 137 50-199 77-232 (415)
451 TIGR00968 3a0106s01 sulfate AB 94.5 0.036 9.2E-07 34.5 3.2 38 84-122 27-64 (241)
452 cd03264 ABC_drug_resistance_li 94.5 0.057 1.4E-06 33.2 4.2 109 85-194 27-156 (211)
453 PRK13185 chlL protochlorophyll 94.5 0.076 1.9E-06 32.3 4.9 39 84-123 3-41 (269)
454 PRK13542 consensus 94.5 0.019 4.8E-07 36.4 1.7 24 85-108 46-69 (224)
455 cd03230 ABC_DR_subfamily_A Thi 94.5 0.021 5.2E-07 36.1 1.9 25 84-108 27-51 (173)
456 PRK13869 plasmid-partitioning 94.5 0.15 3.8E-06 30.3 6.3 47 72-121 110-159 (405)
457 TIGR03410 urea_trans_UrtE urea 94.5 0.032 8.1E-07 34.8 2.9 23 85-107 28-50 (230)
458 cd02034 CooC The accessory pro 94.5 0.075 1.9E-06 32.3 4.8 36 86-122 2-37 (116)
459 PRK09536 btuD corrinoid ABC tr 94.5 0.034 8.8E-07 34.6 3.1 24 85-108 30-53 (409)
460 cd00009 AAA The AAA+ (ATPases 94.5 0.058 1.5E-06 33.1 4.2 42 82-124 18-59 (151)
461 PRK08533 flagellar accessory p 94.5 0.27 7E-06 28.5 7.6 48 70-121 13-61 (230)
462 KOG0054 consensus 94.4 0.093 2.4E-06 31.7 5.1 63 85-156 549-619 (1381)
463 PRK13537 lipooligosaccharide t 94.4 0.074 1.9E-06 32.4 4.6 25 84-108 32-56 (304)
464 KOG1534 consensus 94.4 0.074 1.9E-06 32.4 4.5 42 84-126 4-49 (273)
465 COG4172 ABC-type uncharacteriz 94.4 0.024 6E-07 35.7 2.0 24 85-108 315-338 (534)
466 COG1127 Ttg2A ABC-type transpo 94.4 0.04 1E-06 34.2 3.1 35 85-121 36-71 (263)
467 CHL00095 clpC Clp protease ATP 94.4 0.3 7.7E-06 28.2 7.6 94 24-121 471-574 (823)
468 PRK13541 cytochrome c biogenes 94.3 0.021 5.3E-07 36.1 1.6 24 85-108 28-51 (195)
469 TIGR00064 ftsY signal recognit 94.3 0.26 6.7E-06 28.6 7.2 105 18-128 16-125 (284)
470 TIGR01448 recD_rel helicase, R 94.3 0.082 2.1E-06 32.1 4.6 65 39-112 330-394 (769)
471 PRK11144 modC molybdate transp 94.2 0.039 9.9E-07 34.3 2.8 44 85-128 26-91 (352)
472 cd03240 ABC_Rad50 The catalyti 94.2 0.035 9E-07 34.5 2.6 23 85-107 24-46 (204)
473 cd02117 NifH_like This family 94.1 0.1 2.6E-06 31.4 4.9 39 85-124 2-40 (212)
474 COG1192 Soj ATPases involved i 94.1 0.14 3.6E-06 30.5 5.5 41 83-123 2-43 (259)
475 cd02038 FleN-like FleN is a me 94.1 0.094 2.4E-06 31.7 4.6 36 85-121 1-37 (139)
476 cd01123 Rad51_DMC1_radA Rad51_ 94.1 0.5 1.3E-05 26.7 8.8 108 70-199 8-128 (235)
477 PRK13231 nitrogenase reductase 94.1 0.091 2.3E-06 31.8 4.5 38 85-124 4-41 (264)
478 pfam01935 DUF87 Domain of unkn 94.1 0.1 2.6E-06 31.4 4.8 38 86-124 26-64 (218)
479 COG3839 MalK ABC-type sugar tr 94.1 0.044 1.1E-06 33.9 2.9 43 85-127 31-89 (338)
480 pfam02283 CobU Cobinamide kina 94.1 0.083 2.1E-06 32.0 4.3 33 86-121 1-33 (166)
481 cd01120 RecA-like_NTPases RecA 94.1 0.097 2.5E-06 31.6 4.6 38 85-123 1-38 (165)
482 PRK12402 replication factor C 94.1 0.09 2.3E-06 31.8 4.4 26 81-107 35-60 (337)
483 pfam00308 Bac_DnaA Bacterial d 94.1 0.16 4.1E-06 30.1 5.7 42 82-125 35-77 (219)
484 KOG2655 consensus 94.0 0.041 1E-06 34.1 2.7 24 81-104 19-42 (366)
485 COG1674 FtsK DNA segregation A 94.0 0.17 4.3E-06 29.9 5.8 69 77-148 516-593 (858)
486 PRK10875 recD exonuclease V su 94.0 0.083 2.1E-06 32.0 4.1 37 82-119 162-201 (607)
487 cd03265 ABC_DrrA DrrA is the A 94.0 0.087 2.2E-06 31.9 4.2 24 85-108 28-51 (220)
488 TIGR03265 PhnT2 putative 2-ami 94.0 0.046 1.2E-06 33.8 2.8 103 85-194 32-160 (353)
489 PRK13539 cytochrome c biogenes 94.0 0.028 7.2E-07 35.2 1.7 24 85-108 30-53 (206)
490 PRK00440 rfc replication facto 93.9 0.093 2.4E-06 31.7 4.3 26 81-107 36-61 (318)
491 TIGR00073 hypB hydrogenase acc 93.9 0.28 7.2E-06 28.4 6.8 55 62-124 18-73 (225)
492 CHL00072 chlL photochlorophyll 93.9 0.17 4.3E-06 30.0 5.6 36 85-121 2-37 (271)
493 pfam06745 KaiC KaiC. This fami 93.9 0.13 3.4E-06 30.6 5.1 42 80-122 16-58 (231)
494 KOG0781 consensus 93.9 0.19 4.8E-06 29.6 5.8 50 79-130 374-423 (587)
495 cd01394 radB RadB. The archaea 93.9 0.15 3.8E-06 30.3 5.2 52 70-124 8-59 (218)
496 TIGR01188 drrA daunorubicin re 93.9 0.049 1.3E-06 33.6 2.8 109 84-193 22-153 (343)
497 TIGR00763 lon ATP-dependent pr 93.9 0.15 3.7E-06 30.4 5.2 84 67-164 436-521 (941)
498 COG4962 CpaF Flp pilus assembl 93.8 0.082 2.1E-06 32.1 3.9 68 40-117 137-205 (355)
499 PRK10463 hydrogenase nickel in 93.8 0.41 1E-05 27.4 7.4 141 81-230 102-253 (290)
500 COG3267 ExeA Type II secretory 93.8 0.4 1E-05 27.4 7.4 45 85-132 53-97 (269)
No 1
>PRK05439 pantothenate kinase; Provisional
Probab=100.00 E-value=0 Score=811.70 Aligned_cols=307 Identities=51% Similarity=0.863 Sum_probs=298.4
Q ss_pred CCCCCCCCCCCHHHHH-HHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9988756001888997-314799988989999874488846899999998999999999999999989999987167766
Q gi|254780827|r 1 MPNHCFYHFFTSHEWA-VHSKFSSILSKKISNQLLSFDSPIDSTEIYKIYFPLSHLLLINVNSAKITCHQYNKFLNLKEE 79 (311)
Q Consensus 1 ~~~~~~y~~~~r~~w~-~~~~~~~~l~~~~~~~l~~~~d~i~~~ev~~iy~pl~~ll~~~~~~~~~~~~~~~~fl~~~~~ 79 (311)
|.+.+||..|+|++|+ +++++++|||++|+++|+|+||+||++||.+||+||+|||++|++++++++.+++.||| +..
T Consensus 4 ~~~~~py~~f~r~~W~~l~~~~~~~Lt~~el~~l~glnd~i~l~eV~~iYlPLs~Ll~l~~~~~~~l~~~~~~FL~-~~~ 82 (312)
T PRK05439 4 SNEMSPYLQFSREQWAALRDSTPLTLTEEELKRLRGLNDPISLDEVTEIYLPLSRLLNLYVAAKQRLQAVLEQFLG-KNG 82 (312)
T ss_pred CCCCCCCEEECHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCC
T ss_conf 6778874255799999884489999999999986378986569999999998999999999999999888987607-998
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC-CCCEEEEEECCCCCCHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 78767999527866673379999999997338-98689995088758826887600020189813312899999999741
Q gi|254780827|r 80 SKIPFVVGITGSVAVGKSTFARILCILLQQIS-NFKVSLITTDGFLFPNAVLTANNLMQRKGFPESYDSNKLLTFLSDVK 158 (311)
Q Consensus 80 ~k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~-~~~V~lis~DgF~~~n~~l~~~~l~~rkGfPeS~D~~~L~~~L~~lK 158 (311)
.++||||||||||||||||+||+|++||++|+ +++|++||||||+|||++|+++|+|+|||||||||+++|++||.++|
T Consensus 83 ~~~PfIIGIaGSVAVGKSTtARlLq~LL~r~~~~~~V~LvTTDGFLypNa~L~~rglm~RKGFPESYD~~~Ll~Fl~~vK 162 (312)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVDLVTTDGFLYPNAELKERGLMKRKGFPESYDMRALLRFLSDVK 162 (312)
T ss_pred CCCCEEEEEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 89998999762010262889999999995078999458993466557868998767712478985447999999999997
Q ss_pred CCCCEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHHHHHHHHHHH
Q ss_conf 26640587404432256589836998689659970610035765457577740100023115773088999887998878
Q gi|254780827|r 159 SGKKKVAVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADKRDIHRWYLNRF 238 (311)
Q Consensus 159 ~G~~~V~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~i~~wyi~Rf 238 (311)
+|++.|.+|+|||.+||++||+.+++++|||||||||||||++. +++..++|||||||||||||++++|++||++||
T Consensus 163 sG~~~v~aPvYSH~~YDIvp~~~~~v~~PDILIvEGlNvLQ~~~---~~~~~~~vSDffDfSIYvDA~~~~Ie~WYi~RF 239 (312)
T PRK05439 163 SGKPNVKAPVYSHLIYDIVPGEYQTVDQPDILIVEGLNVLQTGD---DDNHRLFVSDFFDFSIYVDADEDLIEKWYIERF 239 (312)
T ss_pred CCCCCCCCEEECHHHHHCCCCCEEEECCCCEEEEECHHHCCCCC---CCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHH
T ss_conf 69987664033367764279970697379989991512144797---678865522431389996088889999999999
Q ss_pred HHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEECC
Q ss_conf 8876652016777998860599899999999998863166899952013136649997589984648998419
Q gi|254780827|r 239 LKLRETAFLNPRSYFHHFTEISEEQSLKIAETAWNNINLPNLQHNILPTRKRADLILSKGEDHSVKTIKIKKI 311 (311)
Q Consensus 239 ~~lr~~a~~~~~s~~~~y~~l~~~ea~~~a~~iW~~in~pnl~e~I~PTr~rADlIi~k~~~H~v~~i~lrk~ 311 (311)
+.+|.+||++|+||||+|++|+++||.++|+++|++||+|||+|||+|||.|||+||+||.||+|++|+|||+
T Consensus 240 l~L~~tAf~dp~syF~~ya~l~~~ea~~~A~~iW~~INl~NL~enIlPTr~RA~lIl~K~~~H~i~~v~lRK~ 312 (312)
T PRK05439 240 LKLRETAFSDPDSYFHRYAKLSEEEAIAIARQIWKTINLPNLEENILPTRERADLILHKGADHSIEEVYLRKL 312 (312)
T ss_pred HHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCEEEECCCCCEEEEEEEECC
T ss_conf 9999988609466889871799999999999999971745178766875100228896389964879987349
No 2
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=100.00 E-value=0 Score=614.33 Aligned_cols=281 Identities=46% Similarity=0.761 Sum_probs=272.3
Q ss_pred CCCCCCCCCCHHHHH-HHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 988756001888997-3147999889899998744888468999999989999999999999999899999871677667
Q gi|254780827|r 2 PNHCFYHFFTSHEWA-VHSKFSSILSKKISNQLLSFDSPIDSTEIYKIYFPLSHLLLINVNSAKITCHQYNKFLNLKEES 80 (311)
Q Consensus 2 ~~~~~y~~~~r~~w~-~~~~~~~~l~~~~~~~l~~~~d~i~~~ev~~iy~pl~~ll~~~~~~~~~~~~~~~~fl~~~~~~ 80 (311)
.+.+||..|+|++|+ ++.+++++||++|++.++||||+||++||++||+||++|+++|+.+.+.++.....||+ ....
T Consensus 1 ~~~~~~~~~~~~~w~~~~~~~~~~lt~~e~~~~~~ln~~~~l~eV~~iylpL~~l~~~~~~~~~~~~~~~~~~l~-~~~~ 79 (283)
T COG1072 1 NEYSPYLIFSREQWAALRASTPLTLTEEELKRLRGLNEPISLDEVEDIYLPLSRLLQLYVEARERLFAELLRFLG-TNNQ 79 (283)
T ss_pred CCCCCCEEECHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCC
T ss_conf 987641786342555654058642678999886067889779999999999999999999889988999999834-6688
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCC-CCEEEEEECCCCCCHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 87679995278666733799999999973389-86899950887588268876000201898133128999999997412
Q gi|254780827|r 81 KIPFVVGITGSVAVGKSTFARILCILLQQISN-FKVSLITTDGFLFPNAVLTANNLMQRKGFPESYDSNKLLTFLSDVKS 159 (311)
Q Consensus 81 k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~-~~V~lis~DgF~~~n~~l~~~~l~~rkGfPeS~D~~~L~~~L~~lK~ 159 (311)
+.||||||||||||||||+|++|+.+|++|++ ++|++||||||||||++|+++|+|+|||||||||+++|.+||.++|+
T Consensus 80 ~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfPeSyD~~~ll~fl~~vK~ 159 (283)
T COG1072 80 QRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDERGLMARKGFPESYDVAALLRFLSDVKA 159 (283)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 88879996057665577899999999963889873378714545467677522122001899853568999999999965
Q ss_pred CCCEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHHHHHHHHHHHH
Q ss_conf 66405874044322565898369986896599706100357654575777401000231157730889998879988788
Q gi|254780827|r 160 GKKKVAVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADKRDIHRWYLNRFL 239 (311)
Q Consensus 160 G~~~V~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~i~~wyi~Rf~ 239 (311)
|++.|.+|+|||.+||++|++..++++|||||+||+||||+.. +|.++||||||||||||+++++++||++||+
T Consensus 160 ~~~~v~aPvysh~~yD~vp~~~~v~~~pdIlI~EG~nvLq~~~------p~~~~sdffDfSIyvDa~~~~le~wyi~Rfl 233 (283)
T COG1072 160 GKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGE------PWLFLSDFFDFSIYVDADEELLEERYIERFL 233 (283)
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECHHHHCCCC------CCCCCCCCCEEEEEECCCHHHHHHHHHHHHH
T ss_conf 9985124323311025678850205899889991526625898------5111256221799936999999999999998
Q ss_pred HHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 87665201677799886059989999999999886316689995201313
Q gi|254780827|r 240 KLRETAFLNPRSYFHHFTEISEEQSLKIAETAWNNINLPNLQHNILPTRK 289 (311)
Q Consensus 240 ~lr~~a~~~~~s~~~~y~~l~~~ea~~~a~~iW~~in~pnl~e~I~PTr~ 289 (311)
.++.+||.+|.+||++|+.+++.++++.|..+|+.+|.+|+.+||+|||.
T Consensus 234 ~~g~~a~~~~~~~~~~~~~l~~~~a~~~a~~~w~~in~~nl~~~i~ptr~ 283 (283)
T COG1072 234 KFGLTAFEDPASYFHNYAPLSEREAIESARAIWDNINLLNLRENILPTRP 283 (283)
T ss_pred HHCCCHHHCHHHHHHCCCCCHHHHHHHHHHHCCEEEHHHHHHHCCCCCCC
T ss_conf 50443432626675325742279999852301312110204530676899
No 3
>TIGR00554 panK_bact pantothenate kinase; InterPro: IPR004566 Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. It is very well conserved from Escherichia coli to Bacillus subtilis, but differs considerably from known eukaryotic forms, described in a separate family. It has been shown to be a homodimer in E. coli and is regulated by feedback inhibition by CoA and its thioesters.; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=511.88 Aligned_cols=306 Identities=46% Similarity=0.796 Sum_probs=298.4
Q ss_pred CCCCCCCHHHHH-HHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 756001888997-3147999889899998744888468999999989999999999999999899999871677667876
Q gi|254780827|r 5 CFYHFFTSHEWA-VHSKFSSILSKKISNQLLSFDSPIDSTEIYKIYFPLSHLLLINVNSAKITCHQYNKFLNLKEESKIP 83 (311)
Q Consensus 5 ~~y~~~~r~~w~-~~~~~~~~l~~~~~~~l~~~~d~i~~~ev~~iy~pl~~ll~~~~~~~~~~~~~~~~fl~~~~~~k~P 83 (311)
+||+.|+|++|+ ++.+.++.++++++..+.|+||.++++||.+||+||++|+++|+......+...+.|++.+...+.|
T Consensus 1 ~p~l~~~~~~w~~l~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~y~pl~~l~~~~~~~~~~~~~~~~~fl~~p~~~~~p 80 (309)
T TIGR00554 1 TPFLSFDREQWAELRDSVPLALSEEELKPLEGLNEDLSLEEVETIYLPLTRLLNLYIDSNLERQKVLNRFLGHPNGAKIP 80 (309)
T ss_pred CCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 97643333567776511442004566776504530000345677887689998887764455567788875387655553
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCC-CCEEEEEECCCCCCHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 79995278666733799999999973389-86899950887588268876000201898133128999999997412664
Q gi|254780827|r 84 FVVGITGSVAVGKSTFARILCILLQQISN-FKVSLITTDGFLFPNAVLTANNLMQRKGFPESYDSNKLLTFLSDVKSGKK 162 (311)
Q Consensus 84 fIIGIAG~~asGKST~Ar~L~~lL~~~~~-~~V~lis~DgF~~~n~~l~~~~l~~rkGfPeS~D~~~L~~~L~~lK~G~~ 162 (311)
|||||||++|+||||+|++|+.++++||+ ++|.++++|||++|+..+.+++++.+||||++||+..+++|+.++|+|+.
T Consensus 81 ~~~~~~g~~~~g~~~~~~~l~~ll~~~p~~~~~~l~~~dgfl~p~~~l~~~~~~~~~gfp~~yd~~~l~~f~~d~~~g~~ 160 (309)
T TIGR00554 81 YIIGIAGSVAVGKSTTARILQKLLSRWPDRRKVDLITTDGFLFPLAELKKKNLLSKKGFPESYDVPKLLEFLNDLKSGKP 160 (309)
T ss_pred EEEEECCCHHCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 45540230001431268999999973676554034521430010356543000121478632335899999876422655
Q ss_pred EEEEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCC-CCCCEEECCCCCEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf 05874044322565898369986896599706100357654575-77740100023115773088999887998878887
Q gi|254780827|r 163 KVAVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDN-QKATPMISDFLDFSIYIDADKRDIHRWYLNRFLKL 241 (311)
Q Consensus 163 ~V~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~-~~~~~~vsD~fD~sIyVDad~~~i~~wyi~Rf~~l 241 (311)
.|.+|+|+|.+||+.|+...++.+|||+|+||+|+|+.+....+ +.+..+++||+||+||+||+++.+..||++||+++
T Consensus 161 ~~~~p~y~hl~yd~~~~~~~~~~~~d~~~~~g~~~l~~~~~~~~~~~~~~f~~df~df~~y~d~~~~~~~~wy~~~f~~~ 240 (309)
T TIGR00554 161 NVTAPVYSHLTYDVIPDGFEVVEQPDILILEGLNVLQSGTLEPDRDPPRVFVSDFVDFSIYVDAEEDLLFTWYLERFLKF 240 (309)
T ss_pred CCCCCHHHHHHHHCCCCCCHHHCCCCEEEECCCHHHCCCCCCCCCCCCCEEEEECCEEEEEECCHHHHHHHHHHHHHHHH
T ss_conf 22220122212100355200000343223304212217777766666523521000022452362567889999999876
Q ss_pred HHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEEC
Q ss_conf 665201677799886059989999999999886316689995201313664999758998464899841
Q gi|254780827|r 242 RETAFLNPRSYFHHFTEISEEQSLKIAETAWNNINLPNLQHNILPTRKRADLILSKGEDHSVKTIKIKK 310 (311)
Q Consensus 242 r~~a~~~~~s~~~~y~~l~~~ea~~~a~~iW~~in~pnl~e~I~PTr~rADlIi~k~~~H~v~~i~lrk 310 (311)
|.++|.+|++|||+|+.++++++.+.|..+|+.+|.+|+.+||+|||.||++|++||.+|.|+.+.+||
T Consensus 241 ~~~~f~~p~~yf~~~~~l~~~~~~~~~~~~w~~~~~~~l~~~~lp~~~~~~l~l~~g~~h~~~~~~~~~ 309 (309)
T TIGR00554 241 REGAFNDPDSYFHKYADLSKEEAIETAASLWEEINGLNLYENILPTRERADLILRKGDNHKVEEVLLRK 309 (309)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHEECCCCCCHHHHCCCC
T ss_conf 531146704667665420045688889988875215431000133112100100137762002210059
No 4
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=100.00 E-value=0 Score=476.15 Aligned_cols=219 Identities=59% Similarity=0.995 Sum_probs=210.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-CCCEEEEEECCCCCCHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 999527866673379999999997338-9868999508875882688760002018981331289999999974126640
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQIS-NFKVSLITTDGFLFPNAVLTANNLMQRKGFPESYDSNKLLTFLSDVKSGKKK 163 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~-~~~V~lis~DgF~~~n~~l~~~~l~~rkGfPeS~D~~~L~~~L~~lK~G~~~ 163 (311)
||||||||||||||+|+.|+.+|++++ +.+|++||||||||+|+++++++++.+||||+|||+++|.++|.+||+|++.
T Consensus 1 IIGIaG~sgSGKST~a~~l~~~l~~~~~~~~v~ii~~D~f~~~~~~l~~~~~~~~~g~P~afD~~ll~~~L~~Lk~G~~~ 80 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYPNKELIERGLMDRKGFPESYDMEALLKFLKDIKSGKKN 80 (220)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHCCCCC
T ss_conf 98978899877999999999986002699948999787875785228886466516993021599999999999759985
Q ss_pred EEEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 58740443225658983699868965997061003576545757774010002311577308899988799887888766
Q gi|254780827|r 164 VAVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADKRDIHRWYLNRFLKLRE 243 (311)
Q Consensus 164 V~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~i~~wyi~Rf~~lr~ 243 (311)
|.+|+|||.+|+++|++..++.+|+||||||||+|+.++++ |..++|+||+|||||||++++++|+++||+++++
T Consensus 81 V~~PvYd~~~~~r~~~~~~~i~~~~IiIvEGi~~L~~~~~~-----~~~i~dl~D~kIfvD~d~d~~~~r~i~R~~~~~~ 155 (220)
T cd02025 81 VKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNP-----RLFVSDFFDFSIYVDADEDDIEKWYIKRFLKLRE 155 (220)
T ss_pred EEEEECCCHHCCCCCCCEEEECCCCEEEEEEEEEECCCCCC-----HHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHH
T ss_conf 34010121212578984287269986998323220165211-----1456754657898079989999999999999998
Q ss_pred HHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEE
Q ss_conf 52016777998860599899999999998863166899952013136649997589984648998
Q gi|254780827|r 244 TAFLNPRSYFHHFTEISEEQSLKIAETAWNNINLPNLQHNILPTRKRADLILSKGEDHSVKTIKI 308 (311)
Q Consensus 244 ~a~~~~~s~~~~y~~l~~~ea~~~a~~iW~~in~pnl~e~I~PTr~rADlIi~k~~~H~v~~i~l 308 (311)
.++++++|+++||++++++++.++|.++|+++|+||+++||+|||+|||+||+||++|+|++|+|
T Consensus 156 ~~~r~~~s~~~qy~~~~~~~~~~~~~~~w~~~~~p~~~~~I~Ptk~~AD~Iip~g~~n~v~~~~~ 220 (220)
T cd02025 156 TAFSDPDSYFHRYAKMSEEEAIAFAREVWKNINLKNLRENILPTRNRADLILEKGADHSIEEVYL 220 (220)
T ss_pred HHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCHHCCEEEEECCCCCEEEEEEC
T ss_conf 74148899888875047899999999999970034188757154421469974089980778959
No 5
>PRK09270 frcK putative fructose transport system kinase; Reviewed
Probab=100.00 E-value=0 Score=334.62 Aligned_cols=198 Identities=29% Similarity=0.406 Sum_probs=176.0
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC-CCCEEEEEECCCCCCHHHHHHHCHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 6678767999527866673379999999997338-986899950887588268876000201898133128999999997
Q gi|254780827|r 78 EESKIPFVVGITGSVAVGKSTFARILCILLQQIS-NFKVSLITTDGFLFPNAVLTANNLMQRKGFPESYDSNKLLTFLSD 156 (311)
Q Consensus 78 ~~~k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~-~~~V~lis~DgF~~~n~~l~~~~l~~rkGfPeS~D~~~L~~~L~~ 156 (311)
....+++||||||++||||||+|+.|...|.+.. ...|.+++||||||+|++|++++++.+||+|+|||.++|.++|.+
T Consensus 29 ~~~~rR~lIgIaG~pGSGKSTlA~~l~~~L~~~~~~~~~~~vpmDGFH~~~~~L~~~~~~~rkGaP~TFD~~~l~~~L~~ 108 (230)
T PRK09270 29 AEPQRRTVVGIAGPPGAGKSTLAETLWEALSQQGPELPAIQVPMDGFHLDNAVLDARGLRARKGAPETFDVAGLAELLRR 108 (230)
T ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 59997189999899988999999999999862379985799736533457255543547433799102169889999999
Q ss_pred HHCCCCEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHHHHHHHHH
Q ss_conf 41266405874044322565898369986896599706100357654575777401000231157730889998879988
Q gi|254780827|r 157 VKSGKKKVAVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADKRDIHRWYLN 236 (311)
Q Consensus 157 lK~G~~~V~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~i~~wyi~ 236 (311)
||.|...|.+|+|||..+|++++...+..+++||||||+++|.+. .+|..++++||++||||+|++++++|+++
T Consensus 109 Lk~~~~~v~~P~yD~~~~d~~~~~~~i~~~~~IVIvEGnyLLld~------~~W~~l~~~~D~~ifvd~~~~~~~~Rli~ 182 (230)
T PRK09270 109 LREGDCEVYWPVFDRQLEDPVADAIVVGPTARLVIVEGNYLLLDD------EPWRRLAGFFDFSIFLDAPAEVLRERLVA 182 (230)
T ss_pred HHCCCCCEEECCCCCCCCCCCCCCEEECCCCCEEEEECEEEECCC------CCHHHHHHHHCEEEEEECCHHHHHHHHHH
T ss_conf 856897175213432245778895366699868999344761378------32899998637679984899999999999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 788876652016777998860599899999999998863166899952013136649997589984
Q gi|254780827|r 237 RFLKLRETAFLNPRSYFHHFTEISEEQSLKIAETAWNNINLPNLQHNILPTRKRADLILSKGEDHS 302 (311)
Q Consensus 237 Rf~~lr~~a~~~~~s~~~~y~~l~~~ea~~~a~~iW~~in~pnl~e~I~PTr~rADlIi~k~~~H~ 302 (311)
|++. .+++.++|.+. ++..++||. ++|+|++.+||+||.++.+-.
T Consensus 183 R~~~----------------~G~s~e~a~~r----~~~nD~pN~-~~V~~~~~~aD~vi~~~~~~~ 227 (230)
T PRK09270 183 RKLA----------------GGLSPEAARAF----YLRNDGPNA-RLVLETSRPADLVLEMTATGE 227 (230)
T ss_pred HHHH----------------CCCCHHHHHHH----HHHCCCCHH-HHHHHCCCCCCEEEEECCCCC
T ss_conf 9987----------------29999999999----971661079-999857988988999567664
No 6
>TIGR00235 udk uridine kinase; InterPro: IPR000764 Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP A cDNA for uridine kinase from mouse brain was found which encodes a protein of 277 amino acids. A truncated form of the cDNA was expressed in Escherichia coli, and shown to display uridine kinase activity and to readily form a tetramer, the most active form of the wild-type enzyme. Sequence analysis has identified three ATP-binding site consensus motifs. The predicted secondary structure, and sequence comparison with kinases of known structure, is consistent with uridine kinase having the alpha/beta core nucleotide-binding fold common to many kinases .; GO: 0005524 ATP binding, 0016773 phosphotransferase activity alcohol group as acceptor.
Probab=100.00 E-value=0 Score=333.12 Aligned_cols=193 Identities=23% Similarity=0.390 Sum_probs=172.8
Q ss_pred CCCCCEEEEEECCCCCCH----HHHHHHHHHHHHHCCC--CCEEEEEECCCCCCH--HHHHH-HCHHHCCCCHHHHHHHH
Q ss_conf 678767999527866673----3799999999973389--868999508875882--68876-00020189813312899
Q gi|254780827|r 79 ESKIPFVVGITGSVAVGK----STFARILCILLQQISN--FKVSLITTDGFLFPN--AVLTA-NNLMQRKGFPESYDSNK 149 (311)
Q Consensus 79 ~~k~PfIIGIAG~~asGK----ST~Ar~L~~lL~~~~~--~~V~lis~DgF~~~n--~~l~~-~~l~~rkGfPeS~D~~~ 149 (311)
+..+|+||||||+||||| ||+++.|...+ +. +++.+|++|.||.|. +.++. .-...+++||+|||.++
T Consensus 6 ~~~~c~iigI~GgSgSGKs~iATtV~~~i~~~~---~~kv~~~~~I~~D~YYK~~GP~~~~~~~r~~~NfDHP~AfD~~L 82 (220)
T TIGR00235 6 PKGTCIIIGISGGSGSGKSLIATTVARKIYEQL---GKKVLEIVLISQDNYYKDQGPSDLEMAERKKTNFDHPDAFDNDL 82 (220)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHH---CCCEEEEEEECCCCCCCCCCCCCHHHHHHHCCCCCCCHHCCHHH
T ss_conf 988617997017661015678999999999983---14001457750324458898873124643125889800303799
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHH
Q ss_conf 99999974126640587404432256589836998689659970610035765457577740100023115773088999
Q gi|254780827|r 150 LLTFLSDVKSGKKKVAVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADKRD 229 (311)
Q Consensus 150 L~~~L~~lK~G~~~V~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~ 229 (311)
|.+||.+||.|+ .|..|+||+..|.|+++++..+.|.+|||+|||.+|.+.+ +++++|+|||||||.|+
T Consensus 83 l~~Hl~nLk~g~-~~~~P~Ydyv~HtRv~~eT~~~~P~~VvIlEGi~~l~D~R----------l~~L~dlkifvDt~~D~ 151 (220)
T TIGR00235 83 LYEHLKNLKNGS-AIDVPVYDYVNHTRVKKETVHVEPKDVVILEGILLLTDER----------LRDLMDLKIFVDTPLDI 151 (220)
T ss_pred HHHHHHHHHCCC-EECCCCCCCCCEECCCCCCEEECCEEEEEEECCHHHHHHH----------HHHHHCCEEEEECCCHH
T ss_conf 999999984688-0224542541002025562687350689970618888799----------98871823677468303
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEE
Q ss_conf 887998878887665201677799886059989999999999886316689995201313664999758998464
Q gi|254780827|r 230 IHRWYLNRFLKLRETAFLNPRSYFHHFTEISEEQSLKIAETAWNNINLPNLQHNILPTRKRADLILSKGEDHSVK 304 (311)
Q Consensus 230 i~~wyi~Rf~~lr~~a~~~~~s~~~~y~~l~~~ea~~~a~~iW~~in~pnl~e~I~PTr~rADlIi~k~~~H~v~ 304 (311)
+.-|+++|+...|| |+.+|...| |+.++.||+.+||+|||++||+|||.|++|++.
T Consensus 152 rliRRl~RD~~~RG---R~~dSvI~Q----------------y~~~V~Pm~~~FvEP~K~~AD~IiP~g~~n~~A 207 (220)
T TIGR00235 152 RLIRRLERDIEERG---RSLDSVIDQ----------------YRKTVRPMYLQFVEPTKQYADLIIPEGGKNEVA 207 (220)
T ss_pred HHHHHHHHHHHHCC---CCHHHHHHH----------------HHHHCCCCCCCCCCCCCCCCCEEECCCCCCHHH
T ss_conf 25656565575428---978899999----------------998534621014550101466762589881688
No 7
>PRK05480 uridine kinase; Provisional
Probab=100.00 E-value=5.6e-45 Score=324.38 Aligned_cols=190 Identities=23% Similarity=0.401 Sum_probs=165.6
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHH--HHCHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 7876799952786667337999999999733898689995088758826887--60002018981331289999999974
Q gi|254780827|r 80 SKIPFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLT--ANNLMQRKGFPESYDSNKLLTFLSDV 157 (311)
Q Consensus 80 ~k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~--~~~l~~rkGfPeS~D~~~L~~~L~~l 157 (311)
.|+||||||||+|||||||+|+.|...| +..+|.+|++|+||.+++.+. +++. .++++|+|+|+++|.++|.+|
T Consensus 3 ~k~P~iIgIaG~SgSGKTT~a~~L~~~l---~~~~v~vi~~D~Yy~~~~~~~~~e~~~-~nfD~P~a~d~~ll~~~L~~L 78 (209)
T PRK05480 3 MKQPIIIGIAGGSGSGKTTVASTIYEEL---GDESIAVISQDSYYKDQSHLSMEERVK-TNYDHPDAFDHDLLIEHLKAL 78 (209)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHC---CCCCEEEEECCCCCCCCCCCCHHHHCC-CCCCCCHHHHHHHHHHHHHHH
T ss_conf 8898899998999778999999999980---868759995544124734078868123-687882676699999999999
Q ss_pred HCCCCEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHHHHHHHHHH
Q ss_conf 12664058740443225658983699868965997061003576545757774010002311577308899988799887
Q gi|254780827|r 158 KSGKKKVAVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADKRDIHRWYLNR 237 (311)
Q Consensus 158 K~G~~~V~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~i~~wyi~R 237 (311)
++|++ |.+|+|||.++.+.+ +...+.+++||||||+++|+.+. ++|+||++||||+|.+++..|++.|
T Consensus 79 ~~G~~-v~~P~Ydf~t~~r~~-~~~~i~~~~iiIvEGi~~l~~~~----------lr~~~DlkIfid~~~d~rl~RRi~R 146 (209)
T PRK05480 79 KAGKA-IEIPVYDYTEHTRSK-ETIHVEPKDVIILEGILLLEDER----------LRDLMDIKIFVDTPLDIRLIRRLKR 146 (209)
T ss_pred HCCCC-CCCCCCCCCCCCCCC-CEEEECCCCEEEEECHHHCCCHH----------HHHHHCEEEEEECCHHHHHHHHHHH
T ss_conf 74998-756754455665578-63896698769993456406787----------8865265799966777899999997
Q ss_pred HHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEE
Q ss_conf 8887665201677799886059989999999999886316689995201313664999758998464
Q gi|254780827|r 238 FLKLRETAFLNPRSYFHHFTEISEEQSLKIAETAWNNINLPNLQHNILPTRKRADLILSKGEDHSVK 304 (311)
Q Consensus 238 f~~lr~~a~~~~~s~~~~y~~l~~~ea~~~a~~iW~~in~pnl~e~I~PTr~rADlIi~k~~~H~v~ 304 (311)
+...|+ +++++..++ |...++|++++||.|+|++||+||+.|.+|.|.
T Consensus 147 D~~eRG---r~~e~vi~q----------------~~~~v~p~~~~yI~P~k~~ADlII~~~~~~~va 194 (209)
T PRK05480 147 DVNERG---RSLESVINQ----------------YLSTVRPMHLQFIEPSKRYADIIIPEGGKNRVA 194 (209)
T ss_pred HHHHHC---CCHHHHHHH----------------HHHHHHHHHHHHCHHHHHCCEEEECCCCCCHHH
T ss_conf 899978---899999999----------------999765769976845274240898899964599
No 8
>PTZ00301 uridine kinase; Provisional
Probab=100.00 E-value=1.7e-44 Score=321.35 Aligned_cols=191 Identities=21% Similarity=0.318 Sum_probs=166.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHH-HHHHHHCCCCCEEEEEECCCCCCHHHHH--HHCHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 7679995278666733799999-9999733898689995088758826887--600020189813312899999999741
Q gi|254780827|r 82 IPFVVGITGSVAVGKSTFARIL-CILLQQISNFKVSLITTDGFLFPNAVLT--ANNLMQRKGFPESYDSNKLLTFLSDVK 158 (311)
Q Consensus 82 ~PfIIGIAG~~asGKST~Ar~L-~~lL~~~~~~~V~lis~DgF~~~n~~l~--~~~l~~rkGfPeS~D~~~L~~~L~~lK 158 (311)
.|+||||||+|||||||+|+.| +.+..+.+..+|.++++|+||.+.+.+. +++. .++++|+|+|+++|.++|.+|+
T Consensus 2 ~~~iIgIaGgSgSGKTT~a~~i~~~l~~~~~~~~v~ii~~D~Yy~d~~~~~~~~~~~-~NfDhP~a~D~dLl~~~L~~Lk 80 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAY-TNYDHPKSLEHDLLTTHLRELK 80 (210)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHCCC-CCCCCCCCCCHHHHHHHHHHHH
T ss_conf 988999968876789999999999987614998079983676677876588656278-8999823036999999999997
Q ss_pred CCCCEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHHHHHHHHHHH
Q ss_conf 26640587404432256589836998689659970610035765457577740100023115773088999887998878
Q gi|254780827|r 159 SGKKKVAVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADKRDIHRWYLNRF 238 (311)
Q Consensus 159 ~G~~~V~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~i~~wyi~Rf 238 (311)
+|+ .|.+|+|||.+|.|.+ +...+.+.+|||||||++|+.+. ++++||++||||+|++++..|++.|+
T Consensus 81 ~Gk-~I~~P~Ydf~~h~R~~-~~~~i~p~~vIIvEGi~~l~~~~----------lr~l~DlkIFvd~~~dirl~RRi~RD 148 (210)
T PTZ00301 81 SGK-TVQIPQYDYVHHTRSD-TAVTMTPKSVLIVEGILLFTNAE----------LRNEMDCLIFVDTPLDICLIRRAKRD 148 (210)
T ss_pred CCC-CEECCCCCCCCCCCCC-CEEEECCCCEEEEEEEHHCCCHH----------HHHHHCEEEEECCCHHHHHHHHHHHH
T ss_conf 699-6344665556776679-70896688569997104307898----------99774245773487237889988877
Q ss_pred HHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEE
Q ss_conf 887665201677799886059989999999999886316689995201313664999758998464
Q gi|254780827|r 239 LKLRETAFLNPRSYFHHFTEISEEQSLKIAETAWNNINLPNLQHNILPTRKRADLILSKGEDHSVK 304 (311)
Q Consensus 239 ~~lr~~a~~~~~s~~~~y~~l~~~ea~~~a~~iW~~in~pnl~e~I~PTr~rADlIi~k~~~H~v~ 304 (311)
..+|+ +++++...| |...++|++++||+|||++||+||+-|.+|.|.
T Consensus 149 v~eRG---r~~e~Vi~q----------------y~~~V~P~~~~fI~P~k~~ADiIIp~~~~n~va 195 (210)
T PTZ00301 149 MRERG---RTFESVIEQ----------------YEATVRPMYYAYVEPSKVYADIIVPSWKDNSVA 195 (210)
T ss_pred HHHHC---CCHHHHHHH----------------HHHHHCCCHHHHCCHHHHCCCEEECCCCCCCHH
T ss_conf 88758---899999999----------------996623058876805163361897899986319
No 9
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=100.00 E-value=8.6e-43 Score=309.67 Aligned_cols=185 Identities=26% Similarity=0.431 Sum_probs=162.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHH-HHCHHHCCCCHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 99952786667337999999999733898689995088758826887-60002018981331289999999974126640
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLT-ANNLMQRKGFPESYDSNKLLTFLSDVKSGKKK 163 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~-~~~l~~rkGfPeS~D~~~L~~~L~~lK~G~~~ 163 (311)
||||||+|||||||+|+.|...| ++.+|.++++|+||++...+. ......++++|+|+|+++|.++|.+|++|+ .
T Consensus 1 iIgI~G~sgsGKTT~a~~L~~~l---~~~~v~~i~~D~yy~~~~~~~~~~~~~~~fd~p~a~d~~~l~~~L~~L~~g~-~ 76 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL---GNPKVVIISQDSYYKDLSHEELEERKNNNYDHPDAFDFDLLISHLQDLKNGK-S 76 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH---CCCCEEEEECCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCC-C
T ss_conf 98988999885999999999980---9998589978888879860438784367878922644999999999986489-7
Q ss_pred EEEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 58740443225658983699868965997061003576545757774010002311577308899988799887888766
Q gi|254780827|r 164 VAVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADKRDIHRWYLNRFLKLRE 243 (311)
Q Consensus 164 V~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~i~~wyi~Rf~~lr~ 243 (311)
|.+|+|||.++++.++ ...+.+++||||||+++|+.+. ++++||++||||+|++++..|++.|+...|+
T Consensus 77 i~~p~Yd~~t~~r~~~-~~~i~~~~iiIvEGi~~l~~~~----------lr~~~D~kIfid~~~d~rl~Rri~RD~~eRg 145 (198)
T cd02023 77 VEIPVYDFKTHSRLKE-TVTVYPADVIILEGILALYDKE----------LRDLMDLKIFVDTDADVRLIRRIERDIVERG 145 (198)
T ss_pred CCCCCEECCCCCCCCC-CEEECCCCEEEEECHHHCCCHH----------HHHHHHCEEEEECCHHHHHHHHHHHHHHHHC
T ss_conf 6123100345754677-2796588659982534306888----------8867402378617899999999987698858
Q ss_pred HHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCE
Q ss_conf 520167779988605998999999999988631668999520131366499975899846
Q gi|254780827|r 244 TAFLNPRSYFHHFTEISEEQSLKIAETAWNNINLPNLQHNILPTRKRADLILSKGEDHSV 303 (311)
Q Consensus 244 ~a~~~~~s~~~~y~~l~~~ea~~~a~~iW~~in~pnl~e~I~PTr~rADlIi~k~~~H~v 303 (311)
+++++..++ |...++|++++||.|+|++||+||+.|.+|.+
T Consensus 146 ---~~~~~v~~~----------------~~~~v~p~~~~~i~P~k~~ADlIi~~~~~~~~ 186 (198)
T cd02023 146 ---RDLESVINQ----------------YLKFVKPMHEQFIEPTKRYADVIIPRGGDNHV 186 (198)
T ss_pred ---CCHHHHHHH----------------HHHHHHHHHHHHCCCCHHCCCEEECCCCCCCH
T ss_conf ---999999999----------------99860787998652415147389789998621
No 10
>PRK07429 phosphoribulokinase; Provisional
Probab=100.00 E-value=9.4e-41 Score=295.87 Aligned_cols=182 Identities=23% Similarity=0.379 Sum_probs=151.5
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHH-HHCHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 667876799952786667337999999999733898689995088758826887-6000201898133128999999997
Q gi|254780827|r 78 EESKIPFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLT-ANNLMQRKGFPESYDSNKLLTFLSD 156 (311)
Q Consensus 78 ~~~k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~-~~~l~~rkGfPeS~D~~~L~~~L~~ 156 (311)
+..++||||||||+|||||||+++.|..++ +..+|.+|++|+||..+.... ..+. . ..+|+++|+++|.++|.+
T Consensus 3 ~m~~rP~IIGIAGgSGSGKTTv~r~I~~~f---g~~~VtvI~~DdYhk~dr~~r~~~~~-t-~lhP~And~dLl~e~L~~ 77 (331)
T PRK07429 3 SMPDRPVIIGVAGDSGCGKSTFLRRLADLF---GEELVTVICLDDYHSLDRKQRKEIGI-T-ALDPRANNFDLMYEQLKA 77 (331)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHH---CCCCEEEEECCCCCCCCHHHHHHCCC-C-CCCCCHHCHHHHHHHHHH
T ss_conf 899999899985788778999999999983---88877999478677788788987189-8-789640059999999999
Q ss_pred HHCCCCEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHHHHHHHHH
Q ss_conf 41266405874044322565898369986896599706100357654575777401000231157730889998879988
Q gi|254780827|r 157 VKSGKKKVAVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADKRDIHRWYLN 236 (311)
Q Consensus 157 lK~G~~~V~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~i~~wyi~ 236 (311)
||+|+ .|..|+|||.++...+ ...+.+.+|||+|||++|+.+. ++|+||++||||+|++++..|+|.
T Consensus 78 Lk~Gk-~I~~PvYdh~tg~~~~--~~~I~P~~vIIvEGLh~L~~~~----------lR~l~DlKIFVD~d~diR~~rRI~ 144 (331)
T PRK07429 78 LKTGQ-PILKPIYNHETGKIDP--PEYIKPNKIVVVEGLHPLYDER----------VRDLYDFKVYLDPPDEVKIAWKIK 144 (331)
T ss_pred HHCCC-CCCCCCCCCCCCCCCC--CEEECCCCEEEEECCHHCCCHH----------HHHHCCEEEEECCCHHHHHHHHHH
T ss_conf 98599-7256523564787788--6660688679991612128798----------997549379964878899999888
Q ss_pred HHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 7888766520167779988605998999999999988631668999520131366499975
Q gi|254780827|r 237 RFLKLRETAFLNPRSYFHHFTEISEEQSLKIAETAWNNINLPNLQHNILPTRKRADLILSK 297 (311)
Q Consensus 237 Rf~~lr~~a~~~~~s~~~~y~~l~~~ea~~~a~~iW~~in~pnl~e~I~PTr~rADlIi~k 297 (311)
|+..+|+ +.++++..++ +. .+|++.+||.|+|++||+||.-
T Consensus 145 RDv~ERG---~s~E~Vl~qi----------------~~-RkpD~~~yI~PQk~~ADiVI~~ 185 (331)
T PRK07429 145 RDMAERG---HTYEDVLAEI----------------EK-REPDFEAYIDPQRQYADVVIQV 185 (331)
T ss_pred HHHHHHC---CCHHHHHHHH----------------HH-CCHHHHHHCCCCHHCCCEEEEE
T ss_conf 7786618---9999999999----------------85-1178997668041127289996
No 11
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=4.7e-41 Score=297.89 Aligned_cols=191 Identities=26% Similarity=0.387 Sum_probs=169.8
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHH-HCHHHCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 8767999527866673379999999997338986899950887588268876-000201898133128999999997412
Q gi|254780827|r 81 KIPFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTA-NNLMQRKGFPESYDSNKLLTFLSDVKS 159 (311)
Q Consensus 81 k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~-~~l~~rkGfPeS~D~~~L~~~L~~lK~ 159 (311)
++++||||||+|||||||+|+.|...+ +..+|.+|++|+||.+++.+.. .......++|++||+++|.++|..|++
T Consensus 6 ~~~iiIgIaG~SgSGKTTv~~~l~~~~---~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~ 82 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQL---GVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQ 82 (218)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHH---CCCCCEEEECCCCCCCHHHCCHHHCCCCCCCCHHHHCHHHHHHHHHHHHC
T ss_conf 766999986798778899999999982---86752476522320253016675537857448234368999999999976
Q ss_pred CCCEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHHHHHHHHHHHH
Q ss_conf 66405874044322565898369986896599706100357654575777401000231157730889998879988788
Q gi|254780827|r 160 GKKKVAVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADKRDIHRWYLNRFL 239 (311)
Q Consensus 160 G~~~V~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~i~~wyi~Rf~ 239 (311)
|++ |..|+|||.+|.+.+ +...+.+.+||||||+++|++.. ++|++|++||||+|.+.+..|++.|+.
T Consensus 83 g~~-v~~P~yd~~~~~r~~-~~i~~~p~~VIIvEGi~~l~d~~----------lr~~~d~kIfvdt~~D~RliRri~RD~ 150 (218)
T COG0572 83 GKP-VDLPVYDYKTHTREP-ETIKVEPNDVVIVEGILLLYDER----------LRDLMDLKIFVDTDADVRLIRRIKRDV 150 (218)
T ss_pred CCC-CCCCCCCHHCCCCCC-CCCCCCCCCEEEEECCCCCCCHH----------HHHHCCEEEEEECCCCHHHHHHHHHHH
T ss_conf 992-245642031363257-73313897289994230015076----------776606789997783278899888779
Q ss_pred HHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEE
Q ss_conf 876652016777998860599899999999998863166899952013136649997589984648
Q gi|254780827|r 240 KLRETAFLNPRSYFHHFTEISEEQSLKIAETAWNNINLPNLQHNILPTRKRADLILSKGEDHSVKT 305 (311)
Q Consensus 240 ~lr~~a~~~~~s~~~~y~~l~~~ea~~~a~~iW~~in~pnl~e~I~PTr~rADlIi~k~~~H~v~~ 305 (311)
..|+ +++++++.+| ...++|++++||.|||++||+|++.+..+.+.-
T Consensus 151 ~~rg---~~~~~vi~qy----------------~~~vkp~~~~fIeptk~~ADiiip~~~~n~vav 197 (218)
T COG0572 151 QERG---RDLESVIEQY----------------VKTVRPMYEQFIEPTKKYADIIIPSGGKNEVAV 197 (218)
T ss_pred HHHC---CCHHHHHHHH----------------HHHHCHHHHHCCCCCCCCCEEEEECCCCCEEEH
T ss_conf 8819---9989999999----------------986174146015745111607851588644422
No 12
>pfam00485 PRK Phosphoribulokinase / Uridine kinase family. In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain.
Probab=100.00 E-value=1.2e-38 Score=281.66 Aligned_cols=187 Identities=23% Similarity=0.273 Sum_probs=153.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC-----CCEEEEEECCCCCCHHHHHHHCHH-HCC--CCHHHHHHHHHHHHHHH
Q ss_conf 9995278666733799999999973389-----868999508875882688760002-018--98133128999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISN-----FKVSLITTDGFLFPNAVLTANNLM-QRK--GFPESYDSNKLLTFLSD 156 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~-----~~V~lis~DgF~~~n~~l~~~~l~-~rk--GfPeS~D~~~L~~~L~~ 156 (311)
||||||+|||||||+|+.|+..|...+- ..+..+++|+||.+....+..+.. ... +.|+|+|+++|.++|.+
T Consensus 1 iIgIaG~SgSGKTT~a~~L~~~l~~~~~~~~~~~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~d~P~a~d~~ll~~~l~~ 80 (196)
T pfam00485 1 IIGVAGSSGAGKTTVARTFVSIFGREGVPAAGIEGDSFHRYDRFYMDLHMEDRKRAGNNHYSFFSPEANDFDLLYEQFKE 80 (196)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECHHCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 98998998571999999999996605877641243179860410244375767651457889789662359999999999
Q ss_pred HHCCCCEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHHHHHHHHH
Q ss_conf 41266405874044322565898369986896599706100357654575777401000231157730889998879988
Q gi|254780827|r 157 VKSGKKKVAVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADKRDIHRWYLN 236 (311)
Q Consensus 157 lK~G~~~V~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~i~~wyi~ 236 (311)
||+|+ .|..|+|||.++.+.+.. ..+.+.+||||||+++|+.+. ++++||++||||++.+++..|++.
T Consensus 81 Lk~g~-~i~~P~Ydf~~~~r~~~~-~~i~p~~viIvEGi~~l~~~~----------ir~l~D~kIfid~~~d~rl~RRi~ 148 (196)
T pfam00485 81 LKEGG-SGDKPIYNHVTGEADPWP-ELIEGADILFIEGLHGLYDER----------VAQLLDLKIYVDPDIDLELIQKIQ 148 (196)
T ss_pred HHCCC-CEEEEEEECCCCCCCCCC-EECCCCCEEEEECHHHCCCHH----------HHHHHCEEEEEECCCCHHHHHHHH
T ss_conf 70899-457656751345336773-661788569994333303277----------887638479972680199999987
Q ss_pred HHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCE
Q ss_conf 7888766520167779988605998999999999988631668999520131366499975899846
Q gi|254780827|r 237 RFLKLRETAFLNPRSYFHHFTEISEEQSLKIAETAWNNINLPNLQHNILPTRKRADLILSKGEDHSV 303 (311)
Q Consensus 237 Rf~~lr~~a~~~~~s~~~~y~~l~~~ea~~~a~~iW~~in~pnl~e~I~PTr~rADlIi~k~~~H~v 303 (311)
|+...|+ +++++..++ |+. ++|++++||+|+|++||+||++...+..
T Consensus 149 RD~~eRg---rs~~~v~~q----------------~~~-v~p~~~~fI~P~k~~ADliI~~~p~~~~ 195 (196)
T pfam00485 149 RDMAERG---HSLEGVTDS----------------IER-RKPDYVNYICPQFSYADLIIQRVPTVDT 195 (196)
T ss_pred HCHHHHC---CCHHHHHHH----------------HHH-HHHHHHHHCCCCHHHCCEEECCCCCCCC
T ss_conf 3457519---999999999----------------999-7253896474785229889706998889
No 13
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=100.00 E-value=3.2e-36 Score=265.17 Aligned_cols=178 Identities=24% Similarity=0.368 Sum_probs=145.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC-HHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 999527866673379999999997338986899950887588-2688760002018981331289999999974126640
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFP-NAVLTANNLMQRKGFPESYDSNKLLTFLSDVKSGKKK 163 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~-n~~l~~~~l~~rkGfPeS~D~~~L~~~L~~lK~G~~~ 163 (311)
||||||||||||||+++.+..++ +..+|++|++|+||.. ..+....+..+ .+|+++|+++|.++|.+||+|+ .
T Consensus 1 IIgVaG~SGSGKTTv~~~i~~if---g~~~v~vI~~D~Yhr~dr~~r~~~~~t~--~~P~And~dll~~~l~~Lk~Gk-~ 74 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLF---GSDLVTVICLDDYHSLDRKGRKETGITA--LDPRANNFDLMYEQLKALKEGQ-A 74 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH---CCCCEEEEECCCCCCCCHHHHHHHCCCC--CCCCHHHHHHHHHHHHHHHCCC-C
T ss_conf 98997888786999999999985---8487699965777889989998718776--8975234999999999998599-5
Q ss_pred EEEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 58740443225658983699868965997061003576545757774010002311577308899988799887888766
Q gi|254780827|r 164 VAVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADKRDIHRWYLNRFLKLRE 243 (311)
Q Consensus 164 V~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~i~~wyi~Rf~~lr~ 243 (311)
|..|+|+|.++...+ ...+.++||||+|||++|+.+. +++++|++||||++.+++..|+|.|+...|+
T Consensus 75 i~~PvYdh~tg~~~~--~e~i~p~diII~EGLh~l~~~~----------lrdl~DLkIfVD~d~dlr~~rKI~RD~~ERG 142 (273)
T cd02026 75 IEKPIYNHVTGLIDP--PELIKPTKIVVIEGLHPLYDER----------VRELLDFSVYLDISDEVKFAWKIQRDMAERG 142 (273)
T ss_pred CCCCCCCCCCCCCCC--CEEECCCCEEEEECEECCCCHH----------HHHHHCEEEEECCCHHHHHHHHHHHHHHHHC
T ss_conf 343222145896577--5650687479992200026688----------9866074688568764799998776676648
Q ss_pred HHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 520167779988605998999999999988631668999520131366499975899
Q gi|254780827|r 244 TAFLNPRSYFHHFTEISEEQSLKIAETAWNNINLPNLQHNILPTRKRADLILSKGED 300 (311)
Q Consensus 244 ~a~~~~~s~~~~y~~l~~~ea~~~a~~iW~~in~pnl~e~I~PTr~rADlIi~k~~~ 300 (311)
+..++ ..+. +.. .+|.+.+||.|++++||+|+..=..
T Consensus 143 ---yS~E~------------V~~~----I~r-R~pDy~~yI~PQk~~ADI~iq~vPt 179 (273)
T cd02026 143 ---HSLED------------VLAS----IEA-RKPDFEAYIDPQKQYADVVIQVLPT 179 (273)
T ss_pred ---CCHHH------------HHHH----HHH-HHHHHHHHCCCCCEEEEEEEEECCC
T ss_conf ---89999------------9999----986-0478897507575001289995276
No 14
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=100.00 E-value=1.6e-36 Score=267.13 Aligned_cols=176 Identities=22% Similarity=0.321 Sum_probs=148.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 99952786667337999999999733898689995088758826887600020189813312899999999741266405
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTANNLMQRKGFPESYDSNKLLTFLSDVKSGKKKV 164 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~~~l~~rkGfPeS~D~~~L~~~L~~lK~G~~~V 164 (311)
||||||+|||||||+|+.|...|..- ..+|.++++|+||.+....+.. ..+.++|+++|+++|.++|.+|++|+ .|
T Consensus 1 iIgIaG~SgSGKTT~a~~L~~~l~~~-~~~~~vis~D~yy~~~~~~~~~--~~n~D~p~a~d~~ll~~~L~~L~~g~-~v 76 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVN-GIGPVVISLDDYYVPRKTPRDE--DGNYDFESILDLDLLNKNLHDLLNGK-EV 76 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCCCCCCCC--CCCCCCHHHHHHHHHHHHHHHHHCCC-CE
T ss_conf 98998989778999999999998464-8853999546664576520001--46889813534999999999997799-55
Q ss_pred EEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHH-HHHHHHHHHHHHHH
Q ss_conf 87404432256589836998689659970610035765457577740100023115773088999-88799887888766
Q gi|254780827|r 165 AVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADKRD-IHRWYLNRFLKLRE 243 (311)
Q Consensus 165 ~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~-i~~wyi~Rf~~lr~ 243 (311)
.+|+|||.++.+.+++...+.+.+||||||+++|++ . ++++||++||||++.++ +..|++.|+...|+
T Consensus 77 ~~P~YDf~t~~r~~~~~~~~~p~~vIIvEGi~~l~~-~----------lr~~~D~kIfvd~~~~~~Rl~RRi~RD~~eRg 145 (179)
T cd02028 77 ELPIYDFRTGKRRGYRKLKLPPSGVVILEGIYALNE-R----------LRSLLDIRVAVSGGVHLNRLLRRVVRDIQFRG 145 (179)
T ss_pred EEEEEECCCCCCCCCCEEEECCCCEEEEECHHHCCH-H----------HHHHCCEEEEEECCCHHHHHHHHHHHHHHHHC
T ss_conf 754200437860698059608997899924343899-8----------99766869999788368888999997797739
Q ss_pred HHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 52016777998860599899999999998863166899952013136649997
Q gi|254780827|r 244 TAFLNPRSYFHHFTEISEEQSLKIAETAWNNINLPNLQHNILPTRKRADLILS 296 (311)
Q Consensus 244 ~a~~~~~s~~~~y~~l~~~ea~~~a~~iW~~in~pnl~e~I~PTr~rADlIi~ 296 (311)
+++++..++ |.. .|++++||.|++.+||+|+.
T Consensus 146 ---~~~~~v~~q----------------~~~--~p~~~~~i~p~~~~a~~iv~ 177 (179)
T cd02028 146 ---YSAELTILM----------------WPS--VPSGEEFIIPPLQEAAIVMF 177 (179)
T ss_pred ---CCHHHHHHH----------------HCC--CCCCHHHCCCCCHHCCEEEE
T ss_conf ---999999998----------------622--68835532897121798740
No 15
>PRK08233 hypothetical protein; Provisional
Probab=99.98 E-value=1.3e-31 Score=233.89 Aligned_cols=158 Identities=15% Similarity=0.201 Sum_probs=131.2
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 87679995278666733799999999973389868999508875882688760002018981331289999999974126
Q gi|254780827|r 81 KIPFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTANNLMQRKGFPESYDSNKLLTFLSDVKSG 160 (311)
Q Consensus 81 k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~~~l~~rkGfPeS~D~~~L~~~L~~lK~G 160 (311)
|.|||||||||+||||||+|+.|.. +++ ++.+++.|.|+++++..+.........-.+++|...|.+++..+++|
T Consensus 1 kkp~IIgIaGgSgSGKTtla~~l~~---~l~--~~~~~~~D~y~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~l~~l~~~ 75 (182)
T PRK08233 1 KKTKIITIAAVSGGGKTTLTERLTH---KLK--NSKALYFDRYDFDNCPEDICKWIDDGANYSEWVLTPLIKDIQELIAK 75 (182)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH---HCC--CCEEEEECCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 9988999968886789999999999---746--77589966655546878899874067786666699999999998559
Q ss_pred CCEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHHHHHHHHHHHHH
Q ss_conf 64058740443225658983699868965997061003576545757774010002311577308899988799887888
Q gi|254780827|r 161 KKKVAVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADKRDIHRWYLNRFLK 240 (311)
Q Consensus 161 ~~~V~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~i~~wyi~Rf~~ 240 (311)
.. + +++|+||+++|+.+. ++++||++||||+|.+++..|++.|+.+
T Consensus 76 ~~-~-----------------------d~iIvEgil~l~~~~----------lr~l~D~kIfVdtp~Dirl~RRi~RDi~ 121 (182)
T PRK08233 76 SN-V-----------------------DYIIVDYPFAYLNSE----------MRQYIDVTIFIDTPLDIAMARRILRDFK 121 (182)
T ss_pred CC-C-----------------------CEEEEEEEHHHCCHH----------HHHHHCEEEEECCCHHHHHHHHHHHHHH
T ss_conf 98-7-----------------------289996443626898----------9977187899728689999998888877
Q ss_pred HH-HHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 76-652016777998860599899999999998863166899952013136649997
Q gi|254780827|r 241 LR-ETAFLNPRSYFHHFTEISEEQSLKIAETAWNNINLPNLQHNILPTRKRADLILS 296 (311)
Q Consensus 241 lr-~~a~~~~~s~~~~y~~l~~~ea~~~a~~iW~~in~pnl~e~I~PTr~rADlIi~ 296 (311)
+| + ++.+|+.++| .+.++||+.+||+|||.+||+||.
T Consensus 122 Er~g---r~i~svl~qY----------------~~~VrPm~~~fvePsk~~ADiIId 159 (182)
T PRK08233 122 EDTG---NEIHNDLKHY----------------LNYARPLYLEALDTVKPNADIVLD 159 (182)
T ss_pred HHCC---CCHHHHHHHH----------------HHHHHHHHHHHHCHHHHCCCEEEE
T ss_conf 7618---8789999999----------------998788999985700321968985
No 16
>PRK07667 uridine kinase; Provisional
Probab=99.97 E-value=8.5e-30 Score=221.65 Aligned_cols=174 Identities=18% Similarity=0.307 Sum_probs=132.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCHHHCCC-CHHHHHHHHHHHHH-HHHHCCC
Q ss_conf 799952786667337999999999733898689995088758826887600020189-81331289999999-9741266
Q gi|254780827|r 84 FVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTANNLMQRKG-FPESYDSNKLLTFL-SDVKSGK 161 (311)
Q Consensus 84 fIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~~~l~~rkG-fPeS~D~~~L~~~L-~~lK~G~ 161 (311)
|||||||++||||||+|+.|...|... +..|.++.+|+||.+.+.....+--...+ ++.+||+++|.+.| ..||+|+
T Consensus 15 ~iIgIaG~sgSGKTTla~~L~~~l~~~-~~~v~v~~~Dd~~~~~~~r~~~~~~~~~~~~~~~~D~~~L~~~ll~~Lk~g~ 93 (190)
T PRK07667 15 FILGIDGLSRSGKTTFVANLKENMKQE-GIPFHIFHIDDHIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKFFRKLQNET 93 (190)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 999977989788999999999998665-9837999666242658887305985400125431259999999999843899
Q ss_pred CEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf 40587404432256589836998689659970610035765457577740100023115773088999887998878887
Q gi|254780827|r 162 KKVAVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADKRDIHRWYLNRFLKL 241 (311)
Q Consensus 162 ~~V~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~i~~wyi~Rf~~l 241 (311)
.+..|+||+.++.+.+ +...+++.+||||||++. +.+. ++|+||++||||+|.+.... |.+..
T Consensus 94 -~i~~p~Yd~~t~~~~~-~~~~v~p~~VIIvEGI~l-~~~e----------lrd~~D~kIfVD~~~d~r~~----R~~~~ 156 (190)
T PRK07667 94 -KLTLPFYHDETDTCEM-KKVQIPIVGVIVIEGVFL-QRKE----------WRDFFHYMVYLDCPRETRFL----RESEE 156 (190)
T ss_pred -CEEEEEECCCCCCCCC-CEEECCCCCEEEEECHHH-CCHH----------HHHHCCEEEEEECCHHHHHH----HHHHH
T ss_conf -7675246023366776-427669998899950443-8887----------89756879999789999988----73020
Q ss_pred HHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 6652016777998860599899999999998863166899952013136649997
Q gi|254780827|r 242 RETAFLNPRSYFHHFTEISEEQSLKIAETAWNNINLPNLQHNILPTRKRADLILS 296 (311)
Q Consensus 242 r~~a~~~~~s~~~~y~~l~~~ea~~~a~~iW~~in~pnl~e~I~PTr~rADlIi~ 296 (311)
++++ .++|-.|| |.. .+.+.+...| +++||+||+
T Consensus 157 ~~~~---l~~~~~ry---------------~~a--~~~y~~~~~P-~~~AD~Ii~ 190 (190)
T PRK07667 157 TQKN---LSKFENRY---------------WKA--EDYYLETESP-KDRADLVIK 190 (190)
T ss_pred HHHH---HHHHHHHH---------------HHH--HHHHHHHCCC-HHHCCEEEC
T ss_conf 2346---89999999---------------999--9999974590-752988859
No 17
>PRK06696 uridine kinase; Validated
Probab=99.97 E-value=3.8e-29 Score=217.27 Aligned_cols=203 Identities=18% Similarity=0.255 Sum_probs=160.8
Q ss_pred HHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCHHHCCCC-H
Q ss_conf 998999998716776678767999527866673379999999997338986899950887588268876000201898-1
Q gi|254780827|r 64 KITCHQYNKFLNLKEESKIPFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTANNLMQRKGF-P 142 (311)
Q Consensus 64 ~~~~~~~~~fl~~~~~~k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~~~l~~rkGf-P 142 (311)
.++.....+-+. .-+...|++|||+|++||||||+|+.|.+.|...+ ..|.++++||||.|++.+.++|....+|+ +
T Consensus 8 ~~~~~~~~~~i~-~~~p~rpl~VgIdG~~gSGKTTlA~~La~~L~~~G-~~V~~v~~Ddf~~~~~~r~~~g~~~~~~~~~ 85 (227)
T PRK06696 8 KQVVKEIANHIL-TLNLTRPLRVAIDGITASGKTTFANELAEEIKKRG-RPVIRASIDDFHNPKVIRYRRGRESARGYYE 85 (227)
T ss_pred HHHHHHHHHHHH-HCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC-CCEEEECCCCCCCCHHHHHHHCCCCCCCCCC
T ss_conf 789999999998-35999868999778998787999999999997469-9489971544347377776516677443475
Q ss_pred HHHHHHHHHHHHHH-HHCCC-CEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEE
Q ss_conf 33128999999997-41266-40587404432256589836998689659970610035765457577740100023115
Q gi|254780827|r 143 ESYDSNKLLTFLSD-VKSGK-KKVAVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFS 220 (311)
Q Consensus 143 eS~D~~~L~~~L~~-lK~G~-~~V~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~s 220 (311)
.+||++.|.+.|.+ +..|. ..+..|.|||.++..+.+......+..||||||+++|.+ . ++++||++
T Consensus 86 d~~D~~~l~~~ll~pL~~~~~~~~~~~~~D~~td~~~~~~~~~~p~~~VlIveG~~ll~~-e----------lr~~~D~~ 154 (227)
T PRK06696 86 DAYDYTAFRELLLKPLGPNGDRQYRTASHDLKTDIPVHNEPLMAAPNAVLIVDGTFLLRK-E----------LRDLWDYK 154 (227)
T ss_pred CCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCEECCCCCEEEEECHHHCCH-H----------HHHCCCEE
T ss_conf 410589999999866315898058411246335754568716469980899925564665-5----------77307489
Q ss_pred EEEECCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCEEEEECC
Q ss_conf 7730889998879988788876652016777998860599899999999998863166899952013--13664999758
Q gi|254780827|r 221 IYIDADKRDIHRWYLNRFLKLRETAFLNPRSYFHHFTEISEEQSLKIAETAWNNINLPNLQHNILPT--RKRADLILSKG 298 (311)
Q Consensus 221 IyVDad~~~i~~wyi~Rf~~lr~~a~~~~~s~~~~y~~l~~~ea~~~a~~iW~~in~pnl~e~I~PT--r~rADlIi~k~ 298 (311)
||||++++...+|.++|+...++.. +++ .+.|++.-+|+.+.|+.+. +.+||+|+.-+
T Consensus 155 v~ld~~~~~~~~R~~~Rd~~~~g~~----------------~~~----~~~~~~ry~pa~~~Y~~~~~P~~~Advvv~n~ 214 (227)
T PRK06696 155 IFLDTDFEESRRRGAKRDTEAFGSY----------------EEA----EKMYLERYHPACKLYIDEHNPKECADVVFDNS 214 (227)
T ss_pred EEEECCHHHHHHHHHHHHHHHHCCC----------------HHH----HHHHHHHHHHHHHHHHCCCCHHHHCEEEEECC
T ss_conf 9997999999887665325441683----------------789----99999876389999864168378385999799
Q ss_pred C
Q ss_conf 9
Q gi|254780827|r 299 E 299 (311)
Q Consensus 299 ~ 299 (311)
.
T Consensus 215 d 215 (227)
T PRK06696 215 D 215 (227)
T ss_pred C
T ss_conf 9
No 18
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=99.96 E-value=5.3e-30 Score=223.05 Aligned_cols=164 Identities=18% Similarity=0.286 Sum_probs=131.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHH--HHCHHHCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99952786667337999999999733898689995088758826887--6000201898133128999999997412664
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLT--ANNLMQRKGFPESYDSNKLLTFLSDVKSGKK 162 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~--~~~l~~rkGfPeS~D~~~L~~~L~~lK~G~~ 162 (311)
||||||+|||||||+|+.|+..+ + ++.+|++|+||+|.+++. +++ ..+.++|+|+|+++|.++|..+++|+.
T Consensus 1 iIgIaG~S~SGKTTla~~L~~~l---~--~~~iI~qDdyYk~~~~~~~~~~~-~~NfDhP~AiD~~~l~~~L~~l~~~~~ 74 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL---P--NCCVIHQDDFFKPEDEIPVDENG-FKQWDVLEALDMEAMMSTLDYWRETGH 74 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHC---C--CCEEECCCCCCCCCCCCCHHHCC-CCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 98996888875999999999987---9--98897154467884327621305-768767012058999999999994897
Q ss_pred -------------EEEEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHH
Q ss_conf -------------0587404432256589836998689659970610035765457577740100023115773088999
Q gi|254780827|r 163 -------------KVAVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADKRD 229 (311)
Q Consensus 163 -------------~V~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~ 229 (311)
.+..|+|++..+.+.. +...+.+.+||||||+.+|+.+. ++++||++||||||.++
T Consensus 75 ~~~~~~s~~~~~~~~~~~~~~~~~~~r~~-~~~~~~p~~iiIvEG~ll~~~~~----------lr~l~DlkiFvd~~~d~ 143 (187)
T cd02024 75 FPKFLRSHGNENDPEKEFIEDAQIEETKA-DLLGAEDLHILIVDGFLLYNYKP----------LVDLFDIRYFLRVPYET 143 (187)
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHCCCC-CCCCCCCCEEEEEECHHHCCCHH----------HHHHCCEEEEEECCHHH
T ss_conf 64310133435667756741022211200-01146896499991778719899----------99863967999699999
Q ss_pred HHHHHHHHH--HHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 887998878--88766520167779988605998999999999988631668999520
Q gi|254780827|r 230 IHRWYLNRF--LKLRETAFLNPRSYFHHFTEISEEQSLKIAETAWNNINLPNLQHNIL 285 (311)
Q Consensus 230 i~~wyi~Rf--~~lr~~a~~~~~s~~~~y~~l~~~ea~~~a~~iW~~in~pnl~e~I~ 285 (311)
+.+|+++|+ ..+|+. ..||..| |+.++.||+.++..
T Consensus 144 ~l~RR~~Rd~~~~~~g~-~~D~~~y-------------------f~~~V~P~y~k~~~ 181 (187)
T cd02024 144 CKRRREARTGYVTLEGF-WPDPPGY-------------------FDGHVWPMYLKHHA 181 (187)
T ss_pred HHHHHHCCCCCCCCCCC-CCCCCHH-------------------HHCEECHHHHHHHH
T ss_conf 99997525785426847-8999526-------------------52504153898899
No 19
>KOG4203 consensus
Probab=99.94 E-value=1.5e-26 Score=199.56 Aligned_cols=197 Identities=25% Similarity=0.394 Sum_probs=162.8
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHH-HHHHC--C-CCCEEEEEECCCCCCHHHHH----HHCHHHCCCCHHHHHHHH
Q ss_conf 6678767999527866673379999999-99733--8-98689995088758826887----600020189813312899
Q gi|254780827|r 78 EESKIPFVVGITGSVAVGKSTFARILCI-LLQQI--S-NFKVSLITTDGFLFPNAVLT----ANNLMQRKGFPESYDSNK 149 (311)
Q Consensus 78 ~~~k~PfIIGIAG~~asGKST~Ar~L~~-lL~~~--~-~~~V~lis~DgF~~~n~~l~----~~~l~~rkGfPeS~D~~~ 149 (311)
...+.||+||++|++||||||++..+.. +.... + .+.|.+++.|.||......+ ..+ ..+.++|++||.++
T Consensus 39 ~~~~~~~~igv~~~s~~Gk~~~~~~i~~~l~~~~~~~~~~~v~~ls~~~fY~~lt~~~~~~a~~~-~~~f~~pda~~~~l 117 (473)
T KOG4203 39 PEGKEPFVIGVAGGTASGKSTVCEKIVEQLGAIERDGRQPQVVLLSQDSFYKVLTSEELAKAQEG-KYNFDHPDAFDFEL 117 (473)
T ss_pred CCCCCEEEEEEECCCCCCCEEEHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHCHHHHHHHHHC-CCCCCCCCCCCHHH
T ss_conf 46766379884057556754416889977655411268872799612778876162878886642-32445878766456
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHH
Q ss_conf 99999974126640587404432256589836998689659970610035765457577740100023115773088999
Q gi|254780827|r 150 LLTFLSDVKSGKKKVAVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADKRD 229 (311)
Q Consensus 150 L~~~L~~lK~G~~~V~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~ 229 (311)
+...+++++.|. .|.+|+|++.+|.+.+.+.+++.+++++|+|||+.+++.+ +++++|+++|||++.++
T Consensus 118 ~~~~~~~~~kg~-~v~ip~y~~~~~~~~~~~~~~l~~~~~~ilegil~~yd~~----------~~~l~~~k~fvd~~~d~ 186 (473)
T KOG4203 118 LYLTLKNLKKGK-AVEIPVYDFVTHSRDEEKTIVVYPADVIILEGILAFYDER----------VRDLFTMKLFVDTDADV 186 (473)
T ss_pred HHHHHHCCCCCC-EEECCEEEEECCCCCCCCEEEECCCCCEEEHHHHHHHHHH----------HHHHHCCEEEEECCCCH
T ss_conf 999985156562-5402024311246778740785389855520177776799----------99873342798358642
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEE
Q ss_conf 8879988788876652016777998860599899999999998863166899952013136649997589984648
Q gi|254780827|r 230 IHRWYLNRFLKLRETAFLNPRSYFHHFTEISEEQSLKIAETAWNNINLPNLQHNILPTRKRADLILSKGEDHSVKT 305 (311)
Q Consensus 230 i~~wyi~Rf~~lr~~a~~~~~s~~~~y~~l~~~ea~~~a~~iW~~in~pnl~e~I~PTr~rADlIi~k~~~H~v~~ 305 (311)
+..|++.|....|+ ++..+..-||. ..|+|++.+||+||+++||+|++++++..+.-
T Consensus 187 rla~ri~r~~~~~g---~~l~~i~~q~~----------------~f~kp~~~~~i~p~~~~ad~ii~~~~~n~vai 243 (473)
T KOG4203 187 RLARRILRDIVERG---RDLESILTQYS----------------TFVKPAFEEFILPTKKYADVIIPRGGDNDVAI 243 (473)
T ss_pred HHHHHHHCCHHHHC---CCHHHHHHHHH----------------HHCCCHHHHHHHHHHHHHHHEEECCCCCCCCC
T ss_conf 46898725546533---24778889987----------------31486088886378873122022245664551
No 20
>COG4240 Predicted kinase [General function prediction only]
Probab=99.91 E-value=3.5e-22 Score=170.08 Aligned_cols=209 Identities=23% Similarity=0.276 Sum_probs=154.1
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHH-----HCHHHCCCCHHHHHHHHHHHH
Q ss_conf 678767999527866673379999999997338986899950887588268876-----000201898133128999999
Q gi|254780827|r 79 ESKIPFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTA-----NNLMQRKGFPESYDSNKLLTF 153 (311)
Q Consensus 79 ~~k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~-----~~l~~rkGfPeS~D~~~L~~~ 153 (311)
+.++|||+||+|++||||||+|-.|..+|.+-+..++...|.|+||++.+...+ ..+...+|.|+|+|+.++.+.
T Consensus 46 e~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnV 125 (300)
T COG4240 46 ERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNV 125 (300)
T ss_pred HCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCHHHHHHHHHHCCCHHCCCCCCCCCCHHHHHHH
T ss_conf 12796399852688876535999999999973653068866455310438999998733804302699987761789999
Q ss_pred HHHHHCCCCEEEEECCCC----CCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCC------------CCCCE-E----
Q ss_conf 997412664058740443----22565898369986896599706100357654575------------77740-1----
Q gi|254780827|r 154 LSDVKSGKKKVAVPRYSH----SQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDN------------QKATP-M---- 212 (311)
Q Consensus 154 L~~lK~G~~~V~~PvYsh----~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~------------~~~~~-~---- 212 (311)
|.++..|+++|.+|.||. ..+||.|....+.-+.||+|+|||+|.-.|..+.- .+.+. .
T Consensus 126 Lnai~~g~~~V~lPrfDKS~f~gagDR~p~~q~ik~~vdivIlEGWfvGfrPidp~ll~~p~n~l~~~ed~a~~~dvN~k 205 (300)
T COG4240 126 LNAIARGGPTVPLPRFDKSAFAGAGDRAPQTQWIKFEVDIVILEGWFVGFRPIDPELLAAPVNALEAAEDGAWRADVNDK 205 (300)
T ss_pred HHHHHCCCCCCCCCCCCCHHCCCCCCCCCCCCCEECCEEEEEEEEEEEECCCCCHHHHCCCCCCCHHHCCCCHHHHHHHH
T ss_conf 99996589986666544020157787898654122120499985006412448999937988630221132278887755
Q ss_pred ------ECCCCCEEEEEECCH-HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ------000231157730889-9988799887888766520167779988605998999999999988631668999520
Q gi|254780827|r 213 ------ISDFLDFSIYIDADK-RDIHRWYLNRFLKLRETAFLNPRSYFHHFTEISEEQSLKIAETAWNNINLPNLQHNIL 285 (311)
Q Consensus 213 ------vsD~fD~sIyVDad~-~~i~~wyi~Rf~~lr~~a~~~~~s~~~~y~~l~~~ea~~~a~~iW~~in~pnl~e~I~ 285 (311)
+-+-+|-.|-+.|++ .....|+.+.-.+++.. --++|++++..++...-|.. |+-|+.
T Consensus 206 La~Y~pL~~rIdsLillta~din~vy~WRlQqEhkliAr----------~~kgmsdeqv~efvn~ymrs-----l~lylq 270 (300)
T COG4240 206 LAPYRPLFDRIDSLILLTAPDINTVYAWRLQQEHKLIAR----------LAKGMSDEQVSEFVNAYMRS-----LELYLQ 270 (300)
T ss_pred HHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHH----------HHCCCCHHHHHHHHHHHHHH-----HHHHHH
T ss_conf 201078999863425742551488999988878999998----------86368688899999988899-----999998
Q ss_pred HHHCCC----EEEEECCCCCC
Q ss_conf 131366----49997589984
Q gi|254780827|r 286 PTRKRA----DLILSKGEDHS 302 (311)
Q Consensus 286 PTr~rA----DlIi~k~~~H~ 302 (311)
+--+.+ +.|+..+.||-
T Consensus 271 ~ls~~~al~~~a~leI~~d~n 291 (300)
T COG4240 271 RLSEWIALDLPAILEIAVDLN 291 (300)
T ss_pred HHHHHHHCCCCCEEEEEECCC
T ss_conf 888888718861268866466
No 21
>KOG2702 consensus
Probab=99.90 E-value=2.1e-23 Score=178.31 Aligned_cols=190 Identities=21% Similarity=0.236 Sum_probs=149.8
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCC---------CEEE-EEECCCCCCHHHHHH----HCHHHCCCCHH
Q ss_conf 667876799952786667337999999999733898---------6899-950887588268876----00020189813
Q gi|254780827|r 78 EESKIPFVVGITGSVAVGKSTFARILCILLQQISNF---------KVSL-ITTDGFLFPNAVLTA----NNLMQRKGFPE 143 (311)
Q Consensus 78 ~~~k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~---------~V~l-is~DgF~~~n~~l~~----~~l~~rkGfPe 143 (311)
++.++ .+|+||++|+||||.+..+. .+||.. +|+. ++|||||++.++|.. +....++|.|+
T Consensus 116 ~n~~~--l~glag~pGtgkst~~a~v~---~aWp~~~~~f~~e~i~iaiivPMDGFHlsr~~LD~f~dP~~AharRGapw 190 (323)
T KOG2702 116 SNNEE--LTGLAGRPGTGKSTRIAAVD---NAWPVNVNKFAQESINIAIIVPMDGFHLSRRCLDLFKDPQTAHARRGAPW 190 (323)
T ss_pred CCCHH--EEEEECCCCCCCHHHHHHHH---HHCCHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHCCHHHHHHHCCCCC
T ss_conf 44331--26642589876112899887---42433466655530451389526501355999874138688876249986
Q ss_pred HHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEE
Q ss_conf 3128999999997412-664058740443225658983699868965997061003576545757774010002311577
Q gi|254780827|r 144 SYDSNKLLTFLSDVKS-GKKKVAVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIY 222 (311)
Q Consensus 144 S~D~~~L~~~L~~lK~-G~~~V~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIy 222 (311)
|||-.+|+++++.+|. ..+.+.+|-|||..+|++|+..-+-....|+|+||+++|+... .|--+++.||-+.|
T Consensus 191 TFD~~lfl~l~k~lkk~t~~~iyvPsFdHa~gDPv~DdicVs~~~rIvI~EGnYlLl~~~------~Wkdi~k~~d~k~~ 264 (323)
T KOG2702 191 TFDSNLFLQLCKILKKTTIPDIYVPSFDHALGDPVPDDICVSKFTRIVILEGNYLLLDQE------NWKDIYKTLDDKYK 264 (323)
T ss_pred CCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCEEECCCCEEEEEECCEEEECCC------CHHHHHHHHHHHEE
T ss_conf 458889999999985367776414665323489985543320363499995538885386------68889987444333
Q ss_pred EECCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 308899988799887888766520167779988605998999999999988631668999520131366499975
Q gi|254780827|r 223 IDADKRDIHRWYLNRFLKLRETAFLNPRSYFHHFTEISEEQSLKIAETAWNNINLPNLQHNILPTRKRADLILSK 297 (311)
Q Consensus 223 VDad~~~i~~wyi~Rf~~lr~~a~~~~~s~~~~y~~l~~~ea~~~a~~iW~~in~pnl~e~I~PTr~rADlIi~k 297 (311)
+|.+-+.-++|.-.|.+.- .---+.++|++. .+.-+++|++. |...+-.+|+|++.
T Consensus 265 idV~~~~a~~RVa~RHl~s--------------Gl~~t~~ea~er----~d~ND~~N~~~-I~k~~i~~D~iv~~ 320 (323)
T KOG2702 265 IDVDYEAAEERVAKRHLQS--------------GLVTTIAEARER----FDSNDLLNGRD-IDKHLIKVDNIVHI 320 (323)
T ss_pred CCCCHHHHHHHHHHHHHCC--------------CCCCCHHHHHHH----CCCCCCCCHHH-HHHCCCCHHHHHHH
T ss_conf 3353888999998876124--------------665888898763----26455644678-87612656787775
No 22
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.90 E-value=1.1e-22 Score=173.37 Aligned_cols=185 Identities=17% Similarity=0.185 Sum_probs=141.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC-HHHHHHHCHH---HCCCC----HHHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997338986899950887588-2688760002---01898----133128999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFP-NAVLTANNLM---QRKGF----PESYDSNKLLTFLSD 156 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~-n~~l~~~~l~---~rkGf----PeS~D~~~L~~~L~~ 156 (311)
|||||||||+||||+.+.+..++.+- .-+.++|+.|+||.- ..+..+.... ..+++ ||+.++++|.+++..
T Consensus 1 IIaVtGsSGAGtsTv~r~f~~IF~re-~v~a~vIegD~fHryDR~emk~~~~~a~~~g~~~ShfgPeAN~fd~Le~~f~~ 79 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFARE-GIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFRT 79 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 98993388884787999999987205-88528996786654678999999999986478766678444479999999999
Q ss_pred HHCCCCEEEEECCCCCCCCC-----CCCCE----EEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCH
Q ss_conf 41266405874044322565-----89836----9986896599706100357654575777401000231157730889
Q gi|254780827|r 157 VKSGKKKVAVPRYSHSQYDI-----LEGEY----DTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADK 227 (311)
Q Consensus 157 lK~G~~~V~~PvYsh~~~D~-----vp~~~----~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~ 227 (311)
++.|. .+..|+|.|....- .||.+ .+..+.|+|+.||||-+.... ...++++.|++|+|+...
T Consensus 80 y~e~g-~g~kr~Y~H~~~ea~~~~~~pGtFtpwe~l~~~tdlLfyEGLHg~v~t~-------~~dva~~vDL~IgVvP~v 151 (277)
T cd02029 80 YGETG-RGRSRYYLHSDEEAAPFNQEPGTFTPWEDLPEDTDLLFYEGLHGGVVTE-------GYNVAQHADLLVGVVPII 151 (277)
T ss_pred HHCCC-CCCCCEEECCCHHHHHCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCC-------CCCHHHHCCEEEEECCHH
T ss_conf 86689-8764243058213434279986548864558998469995787665674-------305687658665107447
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 99887998878887665201677799886059989999999999886316689995201313664999758
Q gi|254780827|r 228 RDIHRWYLNRFLKLRETAFLNPRSYFHHFTEISEEQSLKIAETAWNNINLPNLQHNILPTRKRADLILSKG 298 (311)
Q Consensus 228 ~~i~~wyi~Rf~~lr~~a~~~~~s~~~~y~~l~~~ea~~~a~~iW~~in~pnl~e~I~PTr~rADlIi~k~ 298 (311)
++-..|.|.|+...|+ .+.|+..+...+- +|.+..||.|++.++|+..++-
T Consensus 152 nLeWiqKI~RD~~eRG---------------yS~EaV~~tIlrR-----mpDyv~yI~PQfs~tdInfqrv 202 (277)
T cd02029 152 NLEWIQKIHRDTAERG---------------YSAEAVMDTILRR-----MPDYINYICPQFSRTDINFQRV 202 (277)
T ss_pred HHHHHHHHHHHHHHHC---------------CCHHHHHHHHHHC-----CCCHHHHCCCCCCCCCEEEEEC
T ss_conf 7343787750054309---------------9999999999853-----8405655378765554667766
No 23
>KOG2878 consensus
Probab=99.78 E-value=1.6e-17 Score=138.42 Aligned_cols=196 Identities=23% Similarity=0.349 Sum_probs=137.6
Q ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHH-HHHHCC-CCCEEEEEECCCCCCHHH---HHH----HCHHHCCCCHHHHHH
Q ss_conf 76678767999527866673379999999-997338-986899950887588268---876----000201898133128
Q gi|254780827|r 77 KEESKIPFVVGITGSVAVGKSTFARILCI-LLQQIS-NFKVSLITTDGFLFPNAV---LTA----NNLMQRKGFPESYDS 147 (311)
Q Consensus 77 ~~~~k~PfIIGIAG~~asGKST~Ar~L~~-lL~~~~-~~~V~lis~DgF~~~n~~---l~~----~~l~~rkGfPeS~D~ 147 (311)
+...+.|+|||++|++||||||++-.|-. +.+++. +..+..+|.|+||...+. |.+ ..+..-+|.|.|+|+
T Consensus 25 ~~G~~~Pl~igfSgPQGsGKstl~~ald~~lt~Ky~~E~s~~~~SvDDFYLThe~Q~eL~k~npnN~Llq~RGlaGtHD~ 104 (282)
T KOG2878 25 KDGDDVPLVIGFSGPQGSGKSTLVFALDYKLTKKYIQEYSSATISVDDFYLTHEGQAELRKKNPNNALLQYRGLAGTHDL 104 (282)
T ss_pred CCCCCCCEEEEECCCCCCCCEEEHHHHHHHHHHHHCCCCCEEEEEECCEEEECHHHHHHHHHCCCCHHHCCCCCCCCCCH
T ss_conf 67886767999337888883043145678999985364414899721036602557888750999802114788885208
Q ss_pred HHHHHHHHHHHCCC---CEEEEECCCCCC----CCCCCC-CEEEECCCCEEEEECCHHCCCCCCCCCC-----C----C-
Q ss_conf 99999999741266---405874044322----565898-3699868965997061003576545757-----7----7-
Q gi|254780827|r 148 NKLLTFLSDVKSGK---KKVAVPRYSHSQ----YDILEG-EYDTIIQPDILLIEGINVLQQNSLSDNQ-----K----A- 209 (311)
Q Consensus 148 ~~L~~~L~~lK~G~---~~V~~PvYsh~~----~D~vp~-~~~vi~~pdIIIvEGi~vL~~~~l~~~~-----~----~- 209 (311)
.+|.+.|.++-.+. .+|.+|.||... +||.+. +...++|.+|+|+|||.+.-.|-. .+. . .
T Consensus 105 kll~evLna~~k~~~d~~~v~vP~YdKS~f~G~GDR~d~sqw~k~~P~~~~ifEGWmlGF~Pl~-~~~v~a~d~l~Gdl~ 183 (282)
T KOG2878 105 KLLVEVLNALSKLTKDGLKVKVPRYDKSAFSGRGDRADSSQWPKVEPLSVIIFEGWMLGFKPLP-ADVVKAVDPLQGDLE 183 (282)
T ss_pred HHHHHHHHHHHCCCCCCCEEECCCCCHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCC-HHHEECCCCCCCCHH
T ss_conf 9999999999717855656751544434316777778645675468616999820122665563-442333685555078
Q ss_pred CE-----EECCC----CCEEEEEECC-HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 40-----10002----3115773088-99988799887888766520167779988605998999999999988631668
Q gi|254780827|r 210 TP-----MISDF----LDFSIYIDAD-KRDIHRWYLNRFLKLRETAFLNPRSYFHHFTEISEEQSLKIAETAWNNINLPN 279 (311)
Q Consensus 210 ~~-----~vsD~----fD~sIyVDad-~~~i~~wyi~Rf~~lr~~a~~~~~s~~~~y~~l~~~ea~~~a~~iW~~in~pn 279 (311)
++ +-+|. +|--|-+.++ ..-..+|+++.-..++.. -.++|++||..++..+- .|.
T Consensus 184 ~VN~kL~~Y~d~~~k~Idslvv~~~q~inyVYrWRLQqEhal~~~----------~~kGMsDEeV~~FV~rY-----mP~ 248 (282)
T KOG2878 184 VVNKKLEAYYDAWDKYIDSLVVIKIQDINYVYRWRLQQEHALRQD----------GQKGMSDEEVNDFVSRY-----MPA 248 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHHH----------HCCCCCHHHHHHHHHHH-----HHH
T ss_conf 776578887899998532179998527117665567778999986----------51688789999999851-----367
Q ss_pred HHHHHHHHHC
Q ss_conf 9995201313
Q gi|254780827|r 280 LQHNILPTRK 289 (311)
Q Consensus 280 l~e~I~PTr~ 289 (311)
+.-| +||-.
T Consensus 249 Yk~Y-L~tl~ 257 (282)
T KOG2878 249 YKAY-LPTLY 257 (282)
T ss_pred HHHH-HHHHH
T ss_conf 7866-54554
No 24
>PRK06547 hypothetical protein; Provisional
Probab=99.68 E-value=1.9e-15 Score=124.46 Aligned_cols=160 Identities=20% Similarity=0.264 Sum_probs=114.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCHHHCCCCHHHHHHHHHH-HHHHHHHCCC
Q ss_conf 679995278666733799999999973389868999508875882688760002018981331289999-9999741266
Q gi|254780827|r 83 PFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTANNLMQRKGFPESYDSNKLL-TFLSDVKSGK 161 (311)
Q Consensus 83 PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~~~l~~rkGfPeS~D~~~L~-~~L~~lK~G~ 161 (311)
-.||+|-|.+||||||+|..|... ++ .+.+|.||+|| |.= -|. ..+.+.|. ..|.-+++|+
T Consensus 15 ~~iVaIDG~sGaGKTTLA~~La~~---~~--~~~vvHmDD~Y-~GW----------~gl--~~~~~~l~~~VL~Pl~~G~ 76 (184)
T PRK06547 15 MITVLIDGRSGSGKTTLAGELAAC---WE--GSQLVHLDDLY-PGW----------DGL--AAASEHVREALLDPRALGR 76 (184)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHH---CC--CCCEEEECCCC-CCC----------CCC--HHHHHHHHHHHHHHHCCCC
T ss_conf 699998689988889999999974---57--98289705777-776----------540--4689999999864641899
Q ss_pred CEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf 40587404432256589836998689659970610035765457577740100023115773088999887998878887
Q gi|254780827|r 162 KKVAVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADKRDIHRWYLNRFLKL 241 (311)
Q Consensus 162 ~~V~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~i~~wyi~Rf~~l 241 (311)
......||.....+ ++...+.++++|||||...++.. ++++.|++||||+|.+..++|-++|+-..
T Consensus 77 -~~~yr~~DW~~~~~--~~~~~v~~~~~lIvEGvga~~~~-----------~r~~~d~~IWve~~~~~r~~R~l~RDGe~ 142 (184)
T PRK06547 77 -PGRWRRWDWANNCP--GGWVTVEPGRRLIIEGVGALTAA-----------NRALADLTVWLEGPEALRKQRALTRDPDY 142 (184)
T ss_pred -CCEEECCCCCCCCC--CCCEECCCCCCEEEECCCCCCHH-----------HCCCCCEEEEEECCHHHHHHHHHHCCCCH
T ss_conf -73660621578997--87567378881899662315631-----------31412377777489899999998609502
Q ss_pred HHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 66520167779988605998999999999988631668999520131366499975899
Q gi|254780827|r 242 RETAFLNPRSYFHHFTEISEEQSLKIAETAWNNINLPNLQHNILPTRKRADLILSKGED 300 (311)
Q Consensus 242 r~~a~~~~~s~~~~y~~l~~~ea~~~a~~iW~~in~pnl~e~I~PTr~rADlIi~k~~~ 300 (311)
..+. ..|..--..-+. -..|+++||+|+.-...
T Consensus 143 --------~~~w----------------~~W~~~E~~~fa--~~~~~~~AD~iv~~t~~ 175 (184)
T PRK06547 143 --------APHW----------------DMWAAQEERHIA--RYDPRDVADLLGSDTAS 175 (184)
T ss_pred --------HHHH----------------HHHHHHHHHHHH--CCCCHHHCEEEEECCCC
T ss_conf --------6999----------------999999999985--59916608189837999
No 25
>KOG3308 consensus
Probab=99.42 E-value=4.4e-13 Score=108.43 Aligned_cols=140 Identities=23% Similarity=0.319 Sum_probs=100.3
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHH-HHCHHHCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 876799952786667337999999999733898689995088758826887-6000201898133128999999997412
Q gi|254780827|r 81 KIPFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLT-ANNLMQRKGFPESYDSNKLLTFLSDVKS 159 (311)
Q Consensus 81 k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~-~~~l~~rkGfPeS~D~~~L~~~L~~lK~ 159 (311)
+.-+||||+|-+-|||||+|+.|+..+ + ...+|++|+||+|.++.+ ..+-....+.+||.|++++.+.+..--.
T Consensus 2 ~K~~ivgiSG~TnsGKTTLak~l~~~f---~--~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~ 76 (225)
T KOG3308 2 MKTLIVGISGCTNSGKTTLAKSLHRFF---P--GCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLD 76 (225)
T ss_pred CEEEEEEEECCCCCCHHHHHHHHHHHC---C--CCEEECCCCCCCCHHHHHCCCCCCCHHCCHHHHHHHHHHHHHHHHHC
T ss_conf 618999864246787768999999873---6--87464022346755342112377211101314209999878888850
Q ss_pred CCCEEEEECCC--CCCCCC---CCCC-EEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHHHHHH
Q ss_conf 66405874044--322565---8983-69986896599706100357654575777401000231157730889998879
Q gi|254780827|r 160 GKKKVAVPRYS--HSQYDI---LEGE-YDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADKRDIHRW 233 (311)
Q Consensus 160 G~~~V~~PvYs--h~~~D~---vp~~-~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~i~~w 233 (311)
+.. .+|.+- +..++. ...+ .+......|+|+||..+.+.++ ..+.||.+|++-+|-+.+.+|
T Consensus 77 ~~~--~~~~ar~~~v~~~~~~~~~~~~q~~~~~~~iviidGfmiy~y~p----------~~~~~d~~im~~~~y~~~krR 144 (225)
T KOG3308 77 SRH--NAPEAREHLVSYANFEHYAQQFQIKAYKNHIVIIDGFMIYNYKP----------QVDLFDRIIMLTLDYETCKRR 144 (225)
T ss_pred CCC--CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCEEEECCH----------HHHHHHHHEEEECCHHHHHHH
T ss_conf 755--56337565411667777764227520027679983614772632----------664555210220439999876
Q ss_pred HHHH
Q ss_conf 9887
Q gi|254780827|r 234 YLNR 237 (311)
Q Consensus 234 yi~R 237 (311)
+-.|
T Consensus 145 r~~R 148 (225)
T KOG3308 145 REAR 148 (225)
T ss_pred HCCC
T ss_conf 2365
No 26
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=98.98 E-value=6.3e-10 Score=87.06 Aligned_cols=163 Identities=19% Similarity=0.282 Sum_probs=93.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCC----CHHHHHHHCHHHCCC-----CHHHHHHHHHHHHHH
Q ss_conf 99952786667337999999999733898689995088758----826887600020189-----813312899999999
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLF----PNAVLTANNLMQRKG-----FPESYDSNKLLTFLS 155 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~----~n~~l~~~~l~~rkG-----fPeS~D~~~L~~~L~ 155 (311)
||||+|+.||||||+|+.|+. + .+.++..|.... ++... ...+....| ..++.|...|.+.+-
T Consensus 1 iigiTG~igSGKStv~~~l~~----~---g~~v~~aD~i~~~l~~~~~~~-~~~i~~~fg~~~~~~~g~i~r~~L~~~vf 72 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE----L---GIPVIDADKIAHEVYEPGGPA-LQAIVEAFGPDILLEDGELDRKKLGEIVF 72 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH----C---CCEEEECHHHHHHHHHCCHHH-HHHHHHHCCCHHCCCCCCCCHHHHHHHHH
T ss_conf 988637875789999999998----7---990996359999988607699-99999873713028888675999999986
Q ss_pred H----HHCCCCEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHHHH
Q ss_conf 7----412664058740443225658983699868965997061003576545757774010002311577308899988
Q gi|254780827|r 156 D----VKSGKKKVAVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADKRDIH 231 (311)
Q Consensus 156 ~----lK~G~~~V~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~i~ 231 (311)
. ++.= ..+-.|.-....-.... ......++++|.-.++... ..+.||+.|+|+|+.+.+.
T Consensus 73 ~~~~~~~~L-e~iihP~v~~~~~~~~~----~~~~~~~vi~evpLL~E~~-----------~~~~~d~ii~V~a~~~~r~ 136 (179)
T cd02022 73 ADPEKRKKL-EAITHPLIRKEIEEQLA----EARKEKVVVLDIPLLFETG-----------LEKLVDRVIVVDAPPEIQI 136 (179)
T ss_pred CCHHHHHHH-HHHHHHHHHHHHHHHHH----HCCCCCCEEEEEEEEEECC-----------CCCCCCEEEEEECCHHHHH
T ss_conf 698999999-85727999999999998----6303563367655542058-----------7655775899986868899
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 799887888766520167779988605998999999999988631668999520131366499975899
Q gi|254780827|r 232 RWYLNRFLKLRETAFLNPRSYFHHFTEISEEQSLKIAETAWNNINLPNLQHNILPTRKRADLILSKGED 300 (311)
Q Consensus 232 ~wyi~Rf~~lr~~a~~~~~s~~~~y~~l~~~ea~~~a~~iW~~in~pnl~e~I~PTr~rADlIi~k~~~ 300 (311)
+|.+.|. +++++++...-...|.. ++ .++.||.||.-+.+
T Consensus 137 ~R~~~R~-------------------~~s~~~~~~~~~~Q~~~------~~----k~~~aD~iI~N~~~ 176 (179)
T cd02022 137 ERLMKRD-------------------GLSEEEAEARIASQMPL------EE----KRARADFVIDNSGS 176 (179)
T ss_pred HHHHHHC-------------------CCCHHHHHHHHHHCCCH------HH----HHHHCCEEEECCCC
T ss_conf 9999802-------------------99899999999968998------99----99859999989998
No 27
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=98.89 E-value=1.3e-09 Score=84.95 Aligned_cols=166 Identities=19% Similarity=0.259 Sum_probs=94.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC----CCHHHHHHHCHHHCCCC-----HHHHHHHHHHHH
Q ss_conf 679995278666733799999999973389868999508875----88268876000201898-----133128999999
Q gi|254780827|r 83 PFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFL----FPNAVLTANNLMQRKGF-----PESYDSNKLLTF 153 (311)
Q Consensus 83 PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~----~~n~~l~~~~l~~rkGf-----PeS~D~~~L~~~ 153 (311)
.++|||+|+.||||||+|+.++.+ + ..+++.|.-- .++.... ..+....|- -++.|...|.+.
T Consensus 2 m~~IgiTG~igsGKStv~~~l~~~----G---~~vidaD~i~~~l~~~~~~~~-~~i~~~fg~~i~~~~g~idr~~L~~~ 73 (199)
T PRK00081 2 MLIIGLTGGIGSGKSTVANIFAEL----G---VPVIDADKIAHQVLEPGGPAL-EAIVEHFGSEILLADGELDRRKLRER 73 (199)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHC----C---CCEEEHHHHHHHHHHHCHHHH-HHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf 789995788877799999999988----9---939963799999997075999-99999853631377787569999999
Q ss_pred HHH----HHCCCCEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHH
Q ss_conf 997----4126640587404432256589836998689659970610035765457577740100023115773088999
Q gi|254780827|r 154 LSD----VKSGKKKVAVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADKRD 229 (311)
Q Consensus 154 L~~----lK~G~~~V~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~ 229 (311)
+-. ++.-+ .+--|.--......+. + ...+..++++|.-..+... ....||+.|+|+|+++.
T Consensus 74 vF~d~~~~~~Le-~iiHP~V~~~i~~~~~-~--~~~~~~~iv~e~pLL~E~~-----------~~~~~d~vi~V~a~~~~ 138 (199)
T PRK00081 74 VFSNPEERKWLE-AILHPLIREEIQEQLQ-Q--AESPEKYVVLDIPLLFENG-----------LYKWFDRVLVVDVPPEI 138 (199)
T ss_pred HHCCHHHHHHHH-HHHHHHHHHHHHHHHH-H--HHCCCCEEEEECHHHHHCC-----------CHHCCCEEEEEECCHHH
T ss_conf 867989999999-9877999999999999-8--6469978999431676536-----------01207857999869999
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 88799887888766520167779988605998999999999988631668999520131366499975899
Q gi|254780827|r 230 IHRWYLNRFLKLRETAFLNPRSYFHHFTEISEEQSLKIAETAWNNINLPNLQHNILPTRKRADLILSKGED 300 (311)
Q Consensus 230 i~~wyi~Rf~~lr~~a~~~~~s~~~~y~~l~~~ea~~~a~~iW~~in~pnl~e~I~PTr~rADlIi~k~~~ 300 (311)
+.+|...|. +++++++..+....|.. ++ -++.||.||.=+.+
T Consensus 139 r~~Rl~~R~-------------------~~~~~~~~~r~~~Q~~~------~~----k~~~aD~vI~N~~s 180 (199)
T PRK00081 139 QLERLMARD-------------------GLSEEEAEAILASQMSR------EE----KLARADDVIDNNGD 180 (199)
T ss_pred HHHHHHHCC-------------------CCCHHHHHHHHHHCCCH------HH----HHHHCCEEEECCCC
T ss_conf 999999748-------------------99899999999958998------99----99969999989999
No 28
>pfam01121 CoaE Dephospho-CoA kinase. This family catalyses the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form Coenzyme A EC:2.7.1.24. This enzyme uses ATP in its reaction.
Probab=98.79 E-value=7.7e-09 Score=79.66 Aligned_cols=164 Identities=18% Similarity=0.233 Sum_probs=93.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC----CCHHHHHHHCHHHCCCC----H-HHHHHHHHHHHH
Q ss_conf 79995278666733799999999973389868999508875----88268876000201898----1-331289999999
Q gi|254780827|r 84 FVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFL----FPNAVLTANNLMQRKGF----P-ESYDSNKLLTFL 154 (311)
Q Consensus 84 fIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~----~~n~~l~~~~l~~rkGf----P-eS~D~~~L~~~L 154 (311)
+||||+|+.||||||+|+.++.+ + ..++..|..- .++... ...+....|- + ++.|...|.+.+
T Consensus 1 ~iIgiTG~IgsGKStv~~~l~~~----G---~~vidaD~i~~~l~~~~~~~-~~~i~~~fg~~i~~~~g~idr~~L~~~v 72 (179)
T pfam01121 1 LIVGLTGGIGSGKSTVANLFADL----G---VPIVDADVIARQVVEPGSPA-LAAIVDHFGPDILLADGQLDRRALRELV 72 (179)
T ss_pred CEEEEECCCCCCHHHHHHHHHHC----C---CCEEECHHHHHHHHHCCHHH-HHHHHHHHCHHHCCCCCCCCHHHHHHHH
T ss_conf 98998578647899999999987----9---91991809999998658589-9999998199860778865799999998
Q ss_pred HHHHCC---CCEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHHHH
Q ss_conf 974126---64058740443225658983699868965997061003576545757774010002311577308899988
Q gi|254780827|r 155 SDVKSG---KKKVAVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADKRDIH 231 (311)
Q Consensus 155 ~~lK~G---~~~V~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~i~ 231 (311)
-.=+.- -+.+--|.--...-.... . .....+++|.=..+... ..+.||+.|+|.|+++.+.
T Consensus 73 F~d~~~~~~Le~iiHP~v~~~~~~~i~----~-~~~~~~v~eipLL~E~~-----------~~~~~D~ii~V~a~~~~r~ 136 (179)
T pfam01121 73 FSDPEEKQWLNAILHPLIRREMFKQLA----Q-LTSPYVLLDVPLLFESG-----------LTKLCHRVLVVDAPVELQV 136 (179)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHH----H-CCCCEEEEECCCHHCCC-----------CCCCCCEEEEEECCHHHHH
T ss_conf 548799999998625999999999998----6-68996999445022067-----------6534775999987999999
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 799887888766520167779988605998999999999988631668999520131366499975899
Q gi|254780827|r 232 RWYLNRFLKLRETAFLNPRSYFHHFTEISEEQSLKIAETAWNNINLPNLQHNILPTRKRADLILSKGED 300 (311)
Q Consensus 232 ~wyi~Rf~~lr~~a~~~~~s~~~~y~~l~~~ea~~~a~~iW~~in~pnl~e~I~PTr~rADlIi~k~~~ 300 (311)
+|.+.|. +++++++..+-...|..- + -+++||.||.=+++
T Consensus 137 ~Rl~~R~-------------------~~s~~~~~~~~~~Q~~~~------~----k~~~aD~vI~Nngs 176 (179)
T pfam01121 137 ERLMQRD-------------------GLSREQVQAIIAAQASRE------E----RLALADDVLDNDSG 176 (179)
T ss_pred HHHHHCC-------------------CCCHHHHHHHHHHCCCHH------H----HHHHCCEEEECCCC
T ss_conf 9999805-------------------999999999999689989------9----99869999989898
No 29
>PRK01184 hypothetical protein; Provisional
Probab=98.51 E-value=5.3e-07 Score=67.21 Aligned_cols=160 Identities=15% Similarity=0.194 Sum_probs=80.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCHHHCCCCHHHH-HHHHHHHHHHHHHCCCC
Q ss_conf 79995278666733799999999973389868999508875882688760002018981331-28999999997412664
Q gi|254780827|r 84 FVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTANNLMQRKGFPESY-DSNKLLTFLSDVKSGKK 162 (311)
Q Consensus 84 fIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~~~l~~rkGfPeS~-D~~~L~~~L~~lK~G~~ 162 (311)
-|||++|+.||||||+|++++.+ ...++++++-.. .+..++ |-|.+- .+..+...|++ +-|..
T Consensus 2 ~iIGlTG~iGSGKstva~i~~e~-------G~~vi~~~Divr--~~v~~~------g~~~~~~~~~~~~~~lR~-~~G~~ 65 (183)
T PRK01184 2 MIIIVTGMPGSGKGEFSKIAREL-------GIPVVVMGDVIR--EEVKKR------GLPPTDENIGKVATDLRK-ELGMD 65 (183)
T ss_pred EEEEEECCCCCCHHHHHHHHHHC-------CCEEEECCHHHH--HHHHHC------CCCCCHHHHHHHHHHHHH-HHCCH
T ss_conf 39999689988789999999977-------993998607789--999983------899977899999999998-71955
Q ss_pred EEEEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCC-EEEEEECCHHHHHHHHHHHHHHH
Q ss_conf 05874044322565898369986896599706100357654575777401000231-15773088999887998878887
Q gi|254780827|r 163 KVAVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLD-FSIYIDADKRDIHRWYLNRFLKL 241 (311)
Q Consensus 163 ~V~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD-~sIyVDad~~~i~~wyi~Rf~~l 241 (311)
+ .-....+.+. -..++++|++|+--+..-. .+-..|-+ ..|.|+||.+.+.+|...|..
T Consensus 66 -~----~a~~~~~~i~-----~~~~~~~vidgir~~~E~~--------~~~~~~~~~~li~V~A~~~~R~eRl~~R~r-- 125 (183)
T PRK01184 66 -A----VAIRTVPKIR-----ELGSELVVVDGVRGDAEVE--------YFRKEFEDFILVAIHAPPETRFERLKKRGR-- 125 (183)
T ss_pred -H----HHHHHHHHHH-----HCCCCEEEEECCCCHHHHH--------HHHHHCCCEEEEEEECCHHHHHHHHHHCCC--
T ss_conf -8----9999999997-----0379828981678789999--------999746984999998988899999984699--
Q ss_pred HHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 66520167779988605998999999999988631668999520131366499975899
Q gi|254780827|r 242 RETAFLNPRSYFHHFTEISEEQSLKIAETAWNNINLPNLQHNILPTRKRADLILSKGED 300 (311)
Q Consensus 242 r~~a~~~~~s~~~~y~~l~~~ea~~~a~~iW~~in~pnl~e~I~PTr~rADlIi~k~~~ 300 (311)
+ .|+ .+.+++.+.. +.+.. ..|.-..+.||.+|.-+++
T Consensus 126 ---~-~D~---------~s~e~f~~rd---~~E~~-----~~i~~~i~~AD~vI~N~gs 163 (183)
T PRK01184 126 ---S-DDP---------KTWEELRERD---ERELS-----WGIGEAIALADYMIVNDCT 163 (183)
T ss_pred ---C-CCC---------CCHHHHHHHH---HHHHC-----CCHHHHHHHCCEEEECCCC
T ss_conf ---8-896---------6799999999---98744-----6777899879999987998
No 30
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.50 E-value=8.9e-08 Score=72.47 Aligned_cols=63 Identities=33% Similarity=0.525 Sum_probs=50.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 99952786667337999999999733898689995088758826887600020189813312899999999741266405
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTANNLMQRKGFPESYDSNKLLTFLSDVKSGKKKV 164 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~~~l~~rkGfPeS~D~~~L~~~L~~lK~G~~~V 164 (311)
+|+|+|++||||||+|+.|+..| ....+.+++.
T Consensus 1 ~I~I~G~~gsGKsT~a~~l~~~l---~~~~~~~~~~-------------------------------------------- 33 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL---GGRSVVVLDE-------------------------------------------- 33 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH---CCCEEEEEEH--------------------------------------------
T ss_conf 97883688887258999999995---8954999631--------------------------------------------
Q ss_pred EEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEEC
Q ss_conf 8740443225658983699868965997061003576545757774010002311577308
Q gi|254780827|r 165 AVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDA 225 (311)
Q Consensus 165 ~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDa 225 (311)
++|+||++.+..... ..+++..|++||+|+
T Consensus 34 ------------------------i~I~~g~~~~~~~~~-------~~~~~~~~~~Iyld~ 63 (69)
T cd02019 34 ------------------------IVILEGLYASYKSRD-------ARIRDLADLKIYLDA 63 (69)
T ss_pred ------------------------HHHHHHHHHHHCCCC-------HHHHHHHHHEEEECC
T ss_conf ------------------------134666666530540-------455413441367324
No 31
>TIGR01846 type_I_sec_HlyB type I secretion system ATPase; InterPro: IPR010132 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This entry contains one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane.
Probab=98.44 E-value=3.2e-07 Score=68.68 Aligned_cols=104 Identities=22% Similarity=0.350 Sum_probs=65.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH--------------HHC-C---CCCEEEEEECCCCCCHHHHHHHCHHHCCCCHH---
Q ss_conf 99952786667337999999999--------------733-8---98689995088758826887600020189813---
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILL--------------QQI-S---NFKVSLITTDGFLFPNAVLTANNLMQRKGFPE--- 143 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL--------------~~~-~---~~~V~lis~DgF~~~n~~l~~~~l~~rkGfPe--- 143 (311)
+|||.|+|||||||++|++|.|. ... | ...|.+|=+|++++..++.+.=-+-+. +.|+
T Consensus 493 ~IGIvGpSGSGKSTLTKL~QRLYtP~~GqVLVDG~DLA~~DP~wLRRQ~gVVLQEn~LFsrSirdNI~l~~P-~~~~E~V 571 (703)
T TIGR01846 493 VIGIVGPSGSGKSTLTKLLQRLYTPEHGQVLVDGVDLAIADPAWLRRQVGVVLQENVLFSRSIRDNIALCNP-GASVEHV 571 (703)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHCCEEEEECCHHHCCCHHHHHHHCCC-CCCHHHH
T ss_conf 799872789867899999886148888747770300010185201022302340002101227889851777-7698999
Q ss_pred --HHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC-EE-------EECCCCEEEEEC
Q ss_conf --3128999999997412664058740443225658983-69-------986896599706
Q gi|254780827|r 144 --SYDSNKLLTFLSDVKSGKKKVAVPRYSHSQYDILEGE-YD-------TIIQPDILLIEG 194 (311)
Q Consensus 144 --S~D~~~L~~~L~~lK~G~~~V~~PvYsh~~~D~vp~~-~~-------vi~~pdIIIvEG 194 (311)
+=-..+-.+|+..++.|-.+ ++=-|- --..|. .| .+..|.|||+.=
T Consensus 572 i~AA~LAGA~dFI~~Lp~GY~T---~vgE~G--~~LSGGQRQRIAiARALv~nPrILifDE 627 (703)
T TIGR01846 572 IAAAKLAGAHDFISELPQGYNT---EVGEKG--ANLSGGQRQRIAIARALVANPRILIFDE 627 (703)
T ss_pred HHHHHHCCHHHHHHHCCCCCCC---CCEEEC--CCCCCHHHHHHHHHHHHHCCCCEEEHHH
T ss_conf 9998621858999736376774---001241--5667337899999999735894672011
No 32
>COG3954 PrkB Phosphoribulokinase [Energy production and conversion]
Probab=98.38 E-value=2.4e-06 Score=62.84 Aligned_cols=185 Identities=19% Similarity=0.206 Sum_probs=110.1
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC-HHHHH-----H--HCHHHCCCCHHHHHHHHHHH
Q ss_conf 8767999527866673379999999997338986899950887588-26887-----6--00020189813312899999
Q gi|254780827|r 81 KIPFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFP-NAVLT-----A--NNLMQRKGFPESYDSNKLLT 152 (311)
Q Consensus 81 k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~-n~~l~-----~--~~l~~rkGfPeS~D~~~L~~ 152 (311)
|-| ||.|+||+|+|-+|++...+++.++. +.+.+-|.-|+||.- ..+.. + +|..-.+=-||+.|++.|.+
T Consensus 4 KhP-iIavTGSSGAGTTTts~aFrKiF~~~-~I~aa~iEGDsFHR~tRpeMd~~Irkar~~GrhisyFgpeANdf~~LE~ 81 (289)
T COG3954 4 KHP-VIAVTGSSGAGTTTTSLAFRKIFAQL-NIHAAEVEGDSFHRYTRPEMDMAIRKARDAGRHISYFGPEANDFGLLEQ 81 (289)
T ss_pred CCC-EEEEECCCCCCCCCHHHHHHHHHHHC-CCCHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHH
T ss_conf 786-68884478887544899999999851-7648660265312347266788999998728731002865330578999
Q ss_pred HHHHH-HCCCCEEEEECCCCCC-----CCCCCCCEE----EECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEE
Q ss_conf 99974-1266405874044322-----565898369----9868965997061003576545757774010002311577
Q gi|254780827|r 153 FLSDV-KSGKKKVAVPRYSHSQ-----YDILEGEYD----TIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIY 222 (311)
Q Consensus 153 ~L~~l-K~G~~~V~~PvYsh~~-----~D~vp~~~~----vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIy 222 (311)
+...- |.|.. ..-.|-|.- |.-.||.+. ..++.|++.-||++-..... ...+..-+|+.|=
T Consensus 82 ~f~eYg~~G~G--r~R~YlHt~dEAvp~nq~PGTFTpW~~lpe~sDvLFYEGLHGgvVt~-------~~nvAqHvDlliG 152 (289)
T COG3954 82 TFIEYGQSGKG--RSRKYLHTYDEAVPWNQVPGTFTPWQPLPEPTDVLFYEGLHGGVVTP-------QHNVAQHVDLLVG 152 (289)
T ss_pred HHHHHCCCCCC--CHHHHHHCHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEECC-------CCCHHHHHCEEEE
T ss_conf 99996424766--30112102222175578998777744079865536760454622258-------6247664053640
Q ss_pred EECCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 30889998879988788876652016777998860599899999999998863166899952013136649997
Q gi|254780827|r 223 IDADKRDIHRWYLNRFLKLRETAFLNPRSYFHHFTEISEEQSLKIAETAWNNINLPNLQHNILPTRKRADLILS 296 (311)
Q Consensus 223 VDad~~~i~~wyi~Rf~~lr~~a~~~~~s~~~~y~~l~~~ea~~~a~~iW~~in~pnl~e~I~PTr~rADlIi~ 296 (311)
|-.--.+-.--.+-|+...|+ .+.|...+...+- .+.+..||.|.=.|.++=..
T Consensus 153 vVPivNLEWIQK~~RDt~~RG---------------hSrEAVmDsivRs-----MdDYinyItPQFSrThINFQ 206 (289)
T COG3954 153 VVPIVNLEWIQKLIRDTSERG---------------HSREAVMDSVVRS-----MDDYINYITPQFSRTHINFQ 206 (289)
T ss_pred EEEEEEHHHHHHHHHCCCCCC---------------CCHHHHHHHHHHH-----HHHHHHHCCCCCCCCCCCEE
T ss_conf 356750999999973220147---------------5388889999871-----04467543752343335404
No 33
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=98.34 E-value=1.2e-05 Score=58.02 Aligned_cols=188 Identities=22% Similarity=0.271 Sum_probs=100.1
Q ss_pred HHHHHCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 998744888-4689999999899999999999999998999998716776678767999527866673379999999997
Q gi|254780827|r 30 SNQLLSFDS-PIDSTEIYKIYFPLSHLLLINVNSAKITCHQYNKFLNLKEESKIPFVVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 30 ~~~l~~~~d-~i~~~ev~~iy~pl~~ll~~~~~~~~~~~~~~~~fl~~~~~~k~PfIIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
-+.|++=|+ -++.+|+.+||--|..=..--++..-.+.+ .|. +.+.|.||-|-|.+|+||||.|.-|..-
T Consensus 42 ~e~L~~~~~~~v~~~eir~~~~~l~~k~~~e~a~rY~lwR---~ir----~~~~p~IILIGGasGVGkStIA~ElA~r-- 112 (299)
T COG2074 42 QEELKKEGIRLVTKDEIREVYQKLLEKGDPEVAKRYLLWR---RIR----KMKRPLIILIGGASGVGKSTIAGELARR-- 112 (299)
T ss_pred HHHHHHCCCEEEEHHHHHHHHHHHHHHCCHHHHHHHHHHH---HHH----CCCCCEEEEECCCCCCCHHHHHHHHHHH--
T ss_conf 9999757972761999999999998732879999999999---986----1578759996178877725799999997--
Q ss_pred HCCCCCEEEEEECCC-----------CCCHHHHHHHCHHHCCCCHHHHH--HHHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf 338986899950887-----------58826887600020189813312--89999999974126640587404432256
Q gi|254780827|r 109 QISNFKVSLITTDGF-----------LFPNAVLTANNLMQRKGFPESYD--SNKLLTFLSDVKSGKKKVAVPRYSHSQYD 175 (311)
Q Consensus 109 ~~~~~~V~lis~DgF-----------~~~n~~l~~~~l~~rkGfPeS~D--~~~L~~~L~~lK~G~~~V~~PvYsh~~~D 175 (311)
.+- -.+++||.- +.|.-.-.--+.....+-|+..+ ..++.++.+.+..|-..|- .+
T Consensus 113 -LgI--~~visTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~piiaGF~dqa~~V~~GI~~VI----~R---- 181 (299)
T COG2074 113 -LGI--RSVISTDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDENPIIAGFEDQASAVMVGIEAVI----ER---- 181 (299)
T ss_pred -CCC--CEEECCHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH----HH----
T ss_conf -298--6100424799999973797745535675779999836899996131317877679998899999----99----
Q ss_pred CCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 589836998689659970610035765457577740100023115773088999887998878887665201677799
Q gi|254780827|r 176 ILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADKRDIHRWYLNRFLKLRETAFLNPRSYF 253 (311)
Q Consensus 176 ~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~i~~wyi~Rf~~lr~~a~~~~~s~~ 253 (311)
-+....=+|+||+|++- .+-.. ..+-.+.|-|-+++ +|+++-+.|+..|.. .+..+.|.+.+
T Consensus 182 -------Ai~eG~~lIIEGvHlVP--g~i~~---~~~~~n~~~~~l~i-~dee~Hr~RF~~R~~---~t~~~rp~~Ry 243 (299)
T COG2074 182 -------AIEEGEDLIIEGVHLVP--GLIKE---EALGNNVFMFMLYI-ADEELHRERFYDRIR---YTHASRPGGRY 243 (299)
T ss_pred -------HHHCCCCEEEEEEEECC--CCCCH---HHHCCCEEEEEEEE-CCHHHHHHHHHHHHH---HHHCCCCHHHH
T ss_conf -------98537535887421150--02167---66135517899983-887899999999888---87605965679
No 34
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=98.34 E-value=1.9e-07 Score=70.31 Aligned_cols=132 Identities=23% Similarity=0.293 Sum_probs=68.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCC----CHHHHHHHCHHHCCCCH-----HHHHHHHHHHH
Q ss_conf 6799952786667337999999999733898689995088758----82688760002018981-----33128999999
Q gi|254780827|r 83 PFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLF----PNAVLTANNLMQRKGFP-----ESYDSNKLLTF 153 (311)
Q Consensus 83 PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~----~n~~l~~~~l~~rkGfP-----eS~D~~~L~~~ 153 (311)
+.+||++|+.||||||+|+.++. + .+.++.+|.+-+ |+... -..+..++|-+ .++|...|-+.
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~------G~~vidaD~v~r~~~~~~~~~-~~~i~~~fG~~i~~~dg~~~r~~L~~~ 73 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-L------GFPVIDADDVAREVVEPGGEA-LQEIAERFGLEILDEDGGLDRRKLREK 73 (201)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-C------CCEEEECCHHHHHHHHCCCHH-HHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf 64999957887788999999997-7------993998869999988456357-899999849976566510589999999
Q ss_pred HHHHH---CCCCEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHHH
Q ss_conf 99741---266405874044322565898369986896599706100357654575777401000231157730889998
Q gi|254780827|r 154 LSDVK---SGKKKVAVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADKRDI 230 (311)
Q Consensus 154 L~~lK---~G~~~V~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~i 230 (311)
+-.=. ..-+.+.-|.=-...- ... .-...+ ++++| +-+|.... ..+.||+-|.|+||++..
T Consensus 74 vf~~~~~~~~Le~i~hPli~~~~~-~~~---~~~~~~-~~~~e-iplL~e~~----------~~~~~d~Vi~V~a~~e~r 137 (201)
T COG0237 74 VFNDPEARLKLEKILHPLIRAEIK-VVI---DGARSP-YVVLE-IPLLFEAG----------GEKYFDKVIVVYAPPEIR 137 (201)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHH-HHH---HHHHCC-CEEEE-EHHHHHHC----------CCCCCCEEEEEECCHHHH
T ss_conf 738999999999665589999999-999---974167-63887-07888726----------666688899998999999
Q ss_pred HHHHHHHH
Q ss_conf 87998878
Q gi|254780827|r 231 HRWYLNRF 238 (311)
Q Consensus 231 ~~wyi~Rf 238 (311)
.+|.+.|.
T Consensus 138 ~eRl~~R~ 145 (201)
T COG0237 138 LERLMKRD 145 (201)
T ss_pred HHHHHHCC
T ss_conf 99998337
No 35
>PRK03333 coaE dephospho-CoA kinase/unknown domain fusion protein; Provisional
Probab=98.27 E-value=4.1e-06 Score=61.23 Aligned_cols=131 Identities=18% Similarity=0.267 Sum_probs=61.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC----CCHHHHHHHCHHHCCC-----CHHHHHHHHHHHHH
Q ss_conf 79995278666733799999999973389868999508875----8826887600020189-----81331289999999
Q gi|254780827|r 84 FVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFL----FPNAVLTANNLMQRKG-----FPESYDSNKLLTFL 154 (311)
Q Consensus 84 fIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~----~~n~~l~~~~l~~rkG-----fPeS~D~~~L~~~L 154 (311)
++||++||-||||||+|+.|+.+ + ..+|..|.-- -|....- ..+...+| -=.+.|...|-+.+
T Consensus 2 ~~IGLTGGIgsGKStv~~~l~~~----G---~~viDaD~iar~v~~pg~~~~-~~iv~~FG~~il~~dG~ldR~~L~~~v 73 (394)
T PRK03333 2 LRIGLTGGIGAGKSTVSATLAQL----G---AVVVDGDVLAREVVEPGTEGL-AALVEAFGDDILLADGALDRPALAAKA 73 (394)
T ss_pred EEEEEECCCCCCHHHHHHHHHHC----C---CEEEEHHHHHHHHHCCCHHHH-HHHHHHHCHHHHCCCCCCCHHHHHHHH
T ss_conf 49983067555799999999987----9---949985799999943986899-999998598963889735699999888
Q ss_pred HHHHCC---CCEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHHHH
Q ss_conf 974126---64058740443225658983699868965997061003576545757774010002311577308899988
Q gi|254780827|r 155 SDVKSG---KKKVAVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADKRDIH 231 (311)
Q Consensus 155 ~~lK~G---~~~V~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~i~ 231 (311)
-.=... -..+.-|.--........ ... ++-++|--+=+|.... ..+.||.-|-|+||+++..
T Consensus 74 F~d~~~~~~Ln~I~HP~Vr~~~~~~~~----~~~-~~~vvv~DiPLL~E~~----------~~~~~d~VvvV~~p~e~qv 138 (394)
T PRK03333 74 FADDEARAVLNGIVHPLVAARRAELIA----AAP-EDAVVVEDIPLLVESG----------MAPLFPLVVVVHADVEVRV 138 (394)
T ss_pred HCCHHHHHHHHHHHCHHHHHHHHHHHH----HCC-CCCEEEEEECHHEECC----------CCCCCCEEEEEECCHHHHH
T ss_conf 389999999986158999999999998----557-9977999400113226----------3036997999989889999
Q ss_pred HHHHHH
Q ss_conf 799887
Q gi|254780827|r 232 RWYLNR 237 (311)
Q Consensus 232 ~wyi~R 237 (311)
+|.+.|
T Consensus 139 ~RL~~r 144 (394)
T PRK03333 139 RRLVEQ 144 (394)
T ss_pred HHHHHC
T ss_conf 999863
No 36
>PRK08118 topology modulation protein; Reviewed
Probab=98.23 E-value=1.9e-05 Score=56.63 Aligned_cols=148 Identities=20% Similarity=0.249 Sum_probs=82.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC-HHHHHHHCHHHCCCCH-HHHHHHHHHHHHHHHHCCCCE
Q ss_conf 99527866673379999999997338986899950887588-2688760002018981-331289999999974126640
Q gi|254780827|r 86 VGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFP-NAVLTANNLMQRKGFP-ESYDSNKLLTFLSDVKSGKKK 163 (311)
Q Consensus 86 IGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~-n~~l~~~~l~~rkGfP-eS~D~~~L~~~L~~lK~G~~~ 163 (311)
|-|-|++||||||+|+.|...+ .+.++.+|..+.. +-+ ..| +.| .+.+..+-++
T Consensus 4 I~IiG~~GsGKSTlAr~L~~~~------~ip~~~LD~l~w~~~w~----------~~~~~e~-----~~~~~~~~~~--- 59 (167)
T PRK08118 4 IILIGSGGSGKSTLARQLGEKL------NIPVHHLDALFWKPNWE----------GVPKEEQ-----RTVQNELVKE--- 59 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHHH------CCCEEECCCEEECCCCC----------CCCHHHH-----HHHHHHHHHC---
T ss_conf 9998899987999999999988------96979644347668994----------6888999-----9999999838---
Q ss_pred EEEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 58740443225658983699868965997061003576545757774010002311577308899988799887888766
Q gi|254780827|r 164 VAVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADKRDIHRWYLNRFLKLRE 243 (311)
Q Consensus 164 V~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~i~~wyi~Rf~~lr~ 243 (311)
+==|+||.+.-..+. .-+.-|.-||+|.+...+.-|.+.|.++.++
T Consensus 60 ------------------------~~WIidGny~~~~~~----------r~~~aD~iI~Ld~p~~~~~~r~~kR~~~~~~ 105 (167)
T PRK08118 60 ------------------------DEWIIDGNYGGTMDI----------RLNAADTIIFLDIPRTICLYRAFKRRVQYRG 105 (167)
T ss_pred ------------------------CCEEEECCCHHHHHH----------HHHHCCEEEEECCCHHHHHHHHHHHHHHHCC
T ss_conf ------------------------987994771779987----------7976999999859899999999999999817
Q ss_pred HHCCCHHHHHHHHHCCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 520167779988605998999999999988--631668999520131366499975
Q gi|254780827|r 244 TAFLNPRSYFHHFTEISEEQSLKIAETAWN--NINLPNLQHNILPTRKRADLILSK 297 (311)
Q Consensus 244 ~a~~~~~s~~~~y~~l~~~ea~~~a~~iW~--~in~pnl~e~I~PTr~rADlIi~k 297 (311)
....+... +-.+.-..++..-+|. ....|.+.+.+...+....+|+=|
T Consensus 106 ~~r~d~~~------g~~E~~~~~fl~wi~~~~~~~r~~~~~~l~~~~~~~~vi~lk 155 (167)
T PRK08118 106 KTRPDMGE------GCPEKFDLQFFKWIWEYPKTKRPSILKRLNQLKEDKNVVILK 155 (167)
T ss_pred CCCCCCCC------CCCCCCCHHHHHHHHHCCHHCCHHHHHHHHHCCCCCCEEEEC
T ss_conf 75765689------993625099999998584010199999998556798199977
No 37
>PRK07261 topology modulation protein; Provisional
Probab=98.16 E-value=4.2e-05 Score=54.35 Aligned_cols=105 Identities=22% Similarity=0.259 Sum_probs=66.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCC-CHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 9952786667337999999999733898689995088758-826887600020189813312899999999741266405
Q gi|254780827|r 86 VGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLF-PNAVLTANNLMQRKGFPESYDSNKLLTFLSDVKSGKKKV 164 (311)
Q Consensus 86 IGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~-~n~~l~~~~l~~rkGfPeS~D~~~L~~~L~~lK~G~~~V 164 (311)
|-|-|++||||||+|+.|.+.+ .+-++.+|..+. |+-+ .+ -++.+ .+.+.++-++
T Consensus 3 I~IiG~sGsGKSTlAr~L~~~~------~ip~~~LD~l~w~p~w~-------~~--~~~e~-----~~~~~~~~~~---- 58 (171)
T PRK07261 3 IAIIGYSGSGKSTLARFLGQHY------NCPVLHLDQLHFSSNWQ-------ER--DDDDM-----IADISNFLLK---- 58 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHH------CCCEEEECCEEECCCCE-------EC--CHHHH-----HHHHHHHHHC----
T ss_conf 9998899986899999999987------97979702278889998-------88--89999-----9999999848----
Q ss_pred EEECCCCCCCCCCCCCEEEECCCCEEEEECCHHC--CCCCCCCCCCCCEEECCCCCEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf 8740443225658983699868965997061003--57654575777401000231157730889998879988788876
Q gi|254780827|r 165 AVPRYSHSQYDILEGEYDTIIQPDILLIEGINVL--QQNSLSDNQKATPMISDFLDFSIYIDADKRDIHRWYLNRFLKLR 242 (311)
Q Consensus 165 ~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL--~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~i~~wyi~Rf~~lr 242 (311)
+==|+||.+.- +...+ ..-|.-||+|.+...+.-|.+.|.++.+
T Consensus 59 -----------------------~~WIiDGny~~~~~~~rl-----------~~aD~iI~Ld~p~~~~l~rvikR~l~~~ 104 (171)
T PRK07261 59 -----------------------QDWIIEGNYSNCLYEERM-----------AEADQIIFLNFSRFNCLYRAFKRYLKYR 104 (171)
T ss_pred -----------------------CCEEEECCCCCHHHHHHH-----------HHCCEEEEECCCHHHHHHHHHHHHHHHC
T ss_conf -----------------------987994785124777679-----------7799999985849999999999999982
Q ss_pred HHHCCC
Q ss_conf 652016
Q gi|254780827|r 243 ETAFLN 248 (311)
Q Consensus 243 ~~a~~~ 248 (311)
+....+
T Consensus 105 ~~~r~~ 110 (171)
T PRK07261 105 GKTRPS 110 (171)
T ss_pred CCCCCC
T ss_conf 775876
No 38
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=98.14 E-value=4.1e-05 Score=54.41 Aligned_cols=77 Identities=27% Similarity=0.297 Sum_probs=54.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHH-CCCCCEEEEEECCCCCCHHHHHHHCHHHCCCCH--HHHHHHHHHHHHHHHHC
Q ss_conf 679995278666733799999999973-389868999508875882688760002018981--33128999999997412
Q gi|254780827|r 83 PFVVGITGSVAVGKSTFARILCILLQQ-ISNFKVSLITTDGFLFPNAVLTANNLMQRKGFP--ESYDSNKLLTFLSDVKS 159 (311)
Q Consensus 83 PfIIGIAG~~asGKST~Ar~L~~lL~~-~~~~~V~lis~DgF~~~n~~l~~~~l~~rkGfP--eS~D~~~L~~~L~~lK~ 159 (311)
+=||...|++|||||||+-.|.+.+.- .+..+|.+||+|.| .-.++.+-+....--|.| -.+|-+-|.+.|..++.
T Consensus 194 ~~vi~lvGPTGVGKTTTiAKLAa~~~l~~~~~~V~lIT~Dty-RigA~eQLk~ya~il~vp~~vv~~~~~l~~~l~~~~~ 272 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGKKKVALITTDTY-RIGAVEQLKTYAKILGVPVKVARDPKELAKALERLRD 272 (282)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCC-CHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHCCC
T ss_conf 727999778887578899999999999738996799980777-6789999999999959748993999999999986579
Q ss_pred C
Q ss_conf 6
Q gi|254780827|r 160 G 160 (311)
Q Consensus 160 G 160 (311)
.
T Consensus 273 ~ 273 (282)
T TIGR03499 273 K 273 (282)
T ss_pred C
T ss_conf 8
No 39
>TIGR02173 cyt_kin_arch cytidylate kinase, putative; InterPro: IPR011892 Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by IPR003136 from INTERPRO.; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=98.10 E-value=5.2e-06 Score=60.51 Aligned_cols=113 Identities=22% Similarity=0.304 Sum_probs=68.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 99952786667337999999999733898689995088758826887600020189813312899999999741266405
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTANNLMQRKGFPESYDSNKLLTFLSDVKSGKKKV 164 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~~~l~~rkGfPeS~D~~~L~~~L~~lK~G~~~V 164 (311)
||-|+|+|||||||+|+.|..-|+ --+||- |- -|++..++|. .|...+..+
T Consensus 2 ~I~ISGpPGSGktTvA~~lA~~Ls------l~~iSa-G~--------iRelA~~~Gl-----------dl~E~~~ae--- 52 (173)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLS------LKLISA-GD--------IRELAEKMGL-----------DLAESKYAE--- 52 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC------CCEECC-CH--------HHHHHHHCCC-----------CHHHHHHHC---
T ss_conf 788735896864789999998639------831202-00--------7889864298-----------877734430---
Q ss_pred EEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEE--CCCCCEEEEEECCHHHHHHHHHHHHHH
Q ss_conf 8740443225658983699868965997061003576545757774010--002311577308899988799887888
Q gi|254780827|r 165 AVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMI--SDFLDFSIYIDADKRDIHRWYLNRFLK 240 (311)
Q Consensus 165 ~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~v--sD~fD~sIyVDad~~~i~~wyi~Rf~~ 240 (311)
+-|-=|....... .....+.+=|||||= + ..|..- -++=|.+||++||.+++-.|-=.|..+
T Consensus 53 e~~eIDk~iD~~~---~E~A~~~~nvvlEsr-l----------agW~~~~nG~yaD~~iyL~A~levRA~RIA~Re~k 116 (173)
T TIGR02173 53 ENPEIDKKIDRRI---REIAEKEKNVVLESR-L----------AGWILKKNGEYADVKIYLKAPLEVRARRIAKRENK 116 (173)
T ss_pred CCCCCCHHHHHHH---HHHHCCCCCEEEEEH-H----------HHHHCCCCCCCCCEEEEECCCHHHHHHHHHHCCCC
T ss_conf 5863116753788---554304896688520-5----------43311578896756788608833324332113688
No 40
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=98.04 E-value=1.5e-05 Score=57.49 Aligned_cols=47 Identities=30% Similarity=0.362 Sum_probs=37.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHH
Q ss_conf 6799952786667337999999999733898689995088758826887
Q gi|254780827|r 83 PFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLT 131 (311)
Q Consensus 83 PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~ 131 (311)
|+||...|++||||||+.-.|...+.+ .+.+|.+||+|.| ...+..+
T Consensus 1 P~vi~lvGptGvGKTTTiaKLAa~~~~-~~~~V~lit~Dt~-R~gA~eQ 47 (196)
T pfam00448 1 PNVILLVGLQGSGKTTTIAKLAAYLKK-QGKKVLLVAADTF-RAAAIEQ 47 (196)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCC-CHHHHHH
T ss_conf 969999899999889999999999997-7992899975877-6889999
No 41
>PRK03839 putative kinase; Provisional
Probab=98.02 E-value=8e-05 Score=52.47 Aligned_cols=99 Identities=20% Similarity=0.282 Sum_probs=58.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 99952786667337999999999733898689995088758826887600020189813312899999999741266405
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTANNLMQRKGFPESYDSNKLLTFLSDVKSGKKKV 164 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~~~l~~rkGfPeS~D~~~L~~~L~~lK~G~~~V 164 (311)
+|+|+|.+|+||||+|+.|+..+. ...++. +....+.++...++----.|.+.|.+.+...-++
T Consensus 2 ~I~ITGTPGtGKTTva~~La~~lg------~~~i~v------~~la~~~~~~~~~d~~~~iD~d~l~~~~~~~~~~---- 65 (180)
T PRK03839 2 IIAITGTPGVGKTTISKLLAEKLG------YEYVNL------RDFALEKGIGEEKDDELEIDVDELAYFVEEEFKG---- 65 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC------CEEEEH------HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCC----
T ss_conf 899978999998999999999769------879879------9999983998676775046599999999987348----
Q ss_pred EEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHHHHHHHHHH
Q ss_conf 8740443225658983699868965997061003576545757774010002311577308899988799887
Q gi|254780827|r 165 AVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADKRDIHRWYLNR 237 (311)
Q Consensus 165 ~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~i~~wyi~R 237 (311)
.-+||||-..-..| .|+-|.+-++++.+.+|+-.|
T Consensus 66 -----------------------~~~ivd~H~~h~~p---------------~D~VIVLR~~P~iL~~RL~~R 100 (180)
T PRK03839 66 -----------------------KNVVLDGHLSHLMP---------------ADLVIVLRAHPKLIAERLKER 100 (180)
T ss_pred -----------------------CCEEEEEECCCCCC---------------CCEEEEEECCHHHHHHHHHHC
T ss_conf -----------------------98899864314636---------------877999978869999999976
No 42
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.01 E-value=1.6e-05 Score=57.29 Aligned_cols=70 Identities=23% Similarity=0.289 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 99999999999999989999987--1677667876799952786667337999999999733898689995088
Q gi|254780827|r 51 PLSHLLLINVNSAKITCHQYNKF--LNLKEESKIPFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDG 122 (311)
Q Consensus 51 pl~~ll~~~~~~~~~~~~~~~~f--l~~~~~~k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~Dg 122 (311)
-|.|+|.+-. +...-+...+.- -...+.+..|.+|||+|.+|+||||+-..|-..|.+ ..++|.++..|-
T Consensus 18 AlARaITlvE-s~~~~h~~~a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~-~G~rVaVlAVDP 89 (323)
T COG1703 18 ALARAITLVE-SRRPDHRALARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRE-RGHRVAVLAVDP 89 (323)
T ss_pred HHHHHHHHHH-CCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHH-CCCEEEEEEECC
T ss_conf 9999989976-47950246799999997311799837873179988668899999999997-796789999889
No 43
>PRK06217 hypothetical protein; Validated
Probab=97.99 E-value=7.7e-05 Score=52.57 Aligned_cols=104 Identities=17% Similarity=0.284 Sum_probs=61.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCC-CHHHHHHHCHHHCCCCHHHHHHHHHHHHH-HHHHCCCC
Q ss_conf 99952786667337999999999733898689995088758-82688760002018981331289999999-97412664
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLF-PNAVLTANNLMQRKGFPESYDSNKLLTFL-SDVKSGKK 162 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~-~n~~l~~~~l~~rkGfPeS~D~~~L~~~L-~~lK~G~~ 162 (311)
-|-|.|++||||||+|+.|...|. +..+.+|+||. |+.. .|.+..+-+.=.+.| .++.+.
T Consensus 3 rI~i~G~sGsGkSTla~~La~~l~------~~~~~lD~~~W~p~~~----------pf~~kR~~~eR~~ll~~~~~~~-- 64 (185)
T PRK06217 3 RIHITGASGSGTTTLGAALAEALD------LPHLDTDDFFWLPTDP----------PFTTKREPEERLRLLLEDLRDS-- 64 (185)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC------CCEEECCCCEECCCCC----------CCCCCCCHHHHHHHHHHHHHCC--
T ss_conf 799978998878999999999759------8968645553568999----------7564379999999999986379--
Q ss_pred EEEEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf 0587404432256589836998689659970610035765457577740100023115773088999887998878887
Q gi|254780827|r 163 KVAVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADKRDIHRWYLNRFLKL 241 (311)
Q Consensus 163 ~V~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~i~~wyi~Rf~~l 241 (311)
+=-|++|.+.-.... .-..||+-|||+.|.+++.+|...|-..-
T Consensus 65 -------------------------~~WV~sGs~~~wgd~----------l~p~~DlvVfL~lP~~irl~Rlr~RE~~R 108 (185)
T PRK06217 65 -------------------------EGWILSGSLLGWGDP----------LEPLFDLVVFLYIPPELRLERLRLREEQR 108 (185)
T ss_pred -------------------------CCEEEECCCCCCCCC----------CCCCCCEEEEEECCHHHHHHHHHHHHHHH
T ss_conf -------------------------998995775232321----------13435689998289899999999999986
No 44
>PRK09435 arginine/ornithine transport system ATPase; Provisional
Probab=97.97 E-value=2.8e-05 Score=55.58 Aligned_cols=69 Identities=25% Similarity=0.337 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 9999999999999999----899999871677667876799952786667337999999999733898689995088
Q gi|254780827|r 50 FPLSHLLLINVNSAKI----TCHQYNKFLNLKEESKIPFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDG 122 (311)
Q Consensus 50 ~pl~~ll~~~~~~~~~----~~~~~~~fl~~~~~~k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~Dg 122 (311)
..|+|+|.+-...... ........+. ....-++|||+|++|+||||+-..|-..+.. .+++|.++..|-
T Consensus 15 ~alar~itlvEs~~~~~~~~~~~ll~~l~~---~~g~a~~iGiTG~pG~GKStli~~l~~~~~~-~g~~v~vlavDP 87 (325)
T PRK09435 15 AALARAITLVESTRPDHRALAQELLDALLP---HTGNALRIGITGVPGVGKSTFIEALGMHLIE-QGHKVAVLAVDP 87 (325)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHH---CCCCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEEECC
T ss_conf 899999999867991248999999998630---1798259974279998688999999999996-798589999789
No 45
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.94 E-value=4.6e-05 Score=54.09 Aligned_cols=24 Identities=38% Similarity=0.599 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
||.|.|++||||||+|+.|..-|.
T Consensus 1 iIaIdGpagsGKsT~ak~lA~~l~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 988868997898999999999909
No 46
>pfam03308 ArgK ArgK protein. The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems.
Probab=97.93 E-value=3.7e-05 Score=54.70 Aligned_cols=41 Identities=32% Similarity=0.450 Sum_probs=31.3
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 876799952786667337999999999733898689995088
Q gi|254780827|r 81 KIPFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDG 122 (311)
Q Consensus 81 k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~Dg 122 (311)
..-++|||+|++|+||||+-..|-..+.. .+++|.++..|-
T Consensus 27 g~a~~iGiTG~PGaGKStli~~l~~~~~~-~g~~vaVlAvDP 67 (267)
T pfam03308 27 GRAHRVGITGVPGAGKSTLIEALGMELRR-RGHRVAVLAVDP 67 (267)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEEECC
T ss_conf 99559987689988799999999999996-898689999789
No 47
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.91 E-value=0.00011 Score=51.66 Aligned_cols=136 Identities=21% Similarity=0.297 Sum_probs=80.2
Q ss_pred CCCCC-EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHH-------CHHHCCCC--HHHHHHH
Q ss_conf 67876-79995278666733799999999973389868999508875882688760-------00201898--1331289
Q gi|254780827|r 79 ESKIP-FVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTAN-------NLMQRKGF--PESYDSN 148 (311)
Q Consensus 79 ~~k~P-fIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~~-------~l~~rkGf--PeS~D~~ 148 (311)
..++| +.|||+||+||||||+-..+...|+. +.++.+|+-|=|..-.++.-.+ ++...+|+ |.|+...
T Consensus 8 ~~~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~--~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ 85 (202)
T COG0378 8 EKNRPMLRIGVGGPPGSGKTALIEKTLRALKD--EYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLE 85 (202)
T ss_pred HHCCCEEEEEECCCCCCCHHHHHHHHHHHHHH--HCCEEEEECEEECHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHH
T ss_conf 72586489996179986789999999999975--2776899640400655999973779806874038765886788999
Q ss_pred HHHHHHHHHH--------CCCCEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCC----
Q ss_conf 9999999741--------2664058740443225658983699868965997061003576545757774010002----
Q gi|254780827|r 149 KLLTFLSDVK--------SGKKKVAVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDF---- 216 (311)
Q Consensus 149 ~L~~~L~~lK--------~G~~~V~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~---- 216 (311)
.+.+...+.. +|. +...| +|+...|-. ..-+++ ..||-++ |....+..+-+|+
T Consensus 86 ai~~l~~~~~~~Dll~iEs~G-NL~~~-~sp~L~d~~--~v~Vid-----vteGe~~------P~K~gP~i~~aDllVIn 150 (202)
T COG0378 86 AIEELVLDFPDLDLLFIESVG-NLVCP-FSPDLGDHL--RVVVID-----VTEGEDI------PRKGGPGIFKADLLVIN 150 (202)
T ss_pred HHHHHHHCCCCCCEEEEECCC-CEECC-CCCCHHHCE--EEEEEE-----CCCCCCC------CCCCCCCEEEEEEEEEE
T ss_conf 999986317767789992376-43244-680413046--999998-----7888887------65579964674189985
Q ss_pred -CCEEEEEECCHHHHH
Q ss_conf -311577308899988
Q gi|254780827|r 217 -LDFSIYIDADKRDIH 231 (311)
Q Consensus 217 -fD~sIyVDad~~~i~ 231 (311)
-|+-=||++|.++..
T Consensus 151 K~DLa~~v~~dlevm~ 166 (202)
T COG0378 151 KTDLAPYVGADLEVMA 166 (202)
T ss_pred HHHHHHHHCCCHHHHH
T ss_conf 6773877286699999
No 48
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.91 E-value=0.00017 Score=50.26 Aligned_cols=78 Identities=22% Similarity=0.219 Sum_probs=51.8
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCHHHCCCCH--HHHHHHHHHHHHHH
Q ss_conf 6787679995278666733799999999973389868999508875882688760002018981--33128999999997
Q gi|254780827|r 79 ESKIPFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTANNLMQRKGFP--ESYDSNKLLTFLSD 156 (311)
Q Consensus 79 ~~k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~~~l~~rkGfP--eS~D~~~L~~~L~~ 156 (311)
..+.|.+|-..|+.||||||++-.|...+.. .+.+|.+|++|-| ++-+.-+-+.....-|+| ...|-..+...+..
T Consensus 71 ~~~~~~vI~lvG~~G~GKTTT~AKLA~~~~~-~~~kV~lia~Dty-R~aA~eQLk~~a~~l~v~~~~~~~~~~~~~~~~~ 148 (270)
T PRK06731 71 FEKEVQTIALIGPTGVGKTTTLAKMAWQFHG-KKKTVGFITTDHS-RIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTY 148 (270)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEEECCC-CHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHH
T ss_conf 6799818999888989889999999999986-7990899983888-8889999999999819953545887899999999
Q ss_pred HH
Q ss_conf 41
Q gi|254780827|r 157 VK 158 (311)
Q Consensus 157 lK 158 (311)
++
T Consensus 149 ~~ 150 (270)
T PRK06731 149 FK 150 (270)
T ss_pred HH
T ss_conf 99
No 49
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.90 E-value=6.5e-05 Score=53.08 Aligned_cols=86 Identities=27% Similarity=0.300 Sum_probs=56.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC-CCCCEEEEEECCCCCCHHHHHHHCHHHCCCCH--HHHHHHHHHHHHHHHHCC
Q ss_conf 799952786667337999999999733-89868999508875882688760002018981--331289999999974126
Q gi|254780827|r 84 FVVGITGSVAVGKSTFARILCILLQQI-SNFKVSLITTDGFLFPNAVLTANNLMQRKGFP--ESYDSNKLLTFLSDVKSG 160 (311)
Q Consensus 84 fIIGIAG~~asGKST~Ar~L~~lL~~~-~~~~V~lis~DgF~~~n~~l~~~~l~~rkGfP--eS~D~~~L~~~L~~lK~G 160 (311)
=||...|++|||||||.-.|.+-..-. +..+|.+||+|.| .-.++.+=+--..--|.| -.++-+-|.+.|.++...
T Consensus 211 ~vvalVGPTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~Dty-RigA~eQLk~Ya~ilgvp~~v~~~~~~l~~al~~~~~~ 289 (412)
T PRK05703 211 GVVALVGPTGVGKTTTLAKLAARYALEEGKDKVALITLDTY-RIGAVEQLKTYAKIMGIPVKVAYDPKELAKALEQLANC 289 (412)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCC-CHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCC
T ss_conf 36999888887567699999999999729981799983767-77799999999997197379847999999999871589
Q ss_pred CCEEEE--ECCCC
Q ss_conf 640587--40443
Q gi|254780827|r 161 KKKVAV--PRYSH 171 (311)
Q Consensus 161 ~~~V~~--PvYsh 171 (311)
.-|-+ +-.|+
T Consensus 290 -dlILIDTaG~s~ 301 (412)
T PRK05703 290 -DLILIDTAGRSQ 301 (412)
T ss_pred -CEEEEECCCCCC
T ss_conf -979996898897
No 50
>PRK04182 cytidylate kinase; Provisional
Probab=97.87 E-value=0.00023 Score=49.39 Aligned_cols=110 Identities=18% Similarity=0.314 Sum_probs=54.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 99952786667337999999999733898689995088758826887600020189813312899999999741266405
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTANNLMQRKGFPESYDSNKLLTFLSDVKSGKKKV 164 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~~~l~~rkGfPeS~D~~~L~~~L~~lK~G~~~V 164 (311)
+|.|+|..||||||+|+.|.+.|. ...+.+...+. .+...+|.+. ..+.++.. +
T Consensus 2 ~ItI~g~~GSGk~tIak~LA~~lg------~~~~d~g~i~r--------~~a~~~g~~~----~~~~~~~e---~----- 55 (178)
T PRK04182 2 RITISGPPGSGKTTVARLLAEKLG------LKLVSAGDIFR--------ELARERGMSL----EEFNKYAE---E----- 55 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC------CEEECHHHHHH--------HHHHHCCCCH----HHHHHHHH---C-----
T ss_conf 899958998887999999999959------93872129999--------9999859999----99999985---1-----
Q ss_pred EEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHHHHHHHHHH
Q ss_conf 8740443225658983699868965997061003576545757774010002311577308899988799887
Q gi|254780827|r 165 AVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADKRDIHRWYLNR 237 (311)
Q Consensus 165 ~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~i~~wyi~R 237 (311)
-|.++....... .......++ |++|-+.-+ .+.+.-+++||+.|+.+.+.+|..+|
T Consensus 56 -~~~id~~~~~~~---~~~a~~~~~-Vi~GR~~~~------------il~~~~~l~ifl~A~~e~R~~Ri~~r 111 (178)
T PRK04182 56 -DPEIDKEIDRRQ---LELAKRGNV-VLEGRLAGW------------IVKNYADLKIYLKAPLEVRAKRIAER 111 (178)
T ss_pred -CHHHHHHHHHHH---HHHHHCCCE-EEECCCCCE------------EECCCCCEEEEEECCHHHHHHHHHHH
T ss_conf -926899999999---999853998-998388876------------97279877999989999999999973
No 51
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.82 E-value=0.00053 Score=46.88 Aligned_cols=72 Identities=26% Similarity=0.207 Sum_probs=42.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCHHHCCCCH--HHHHHHHHHHHHH
Q ss_conf 679995278666733799999999973389868999508875882688760002018981--3312899999999
Q gi|254780827|r 83 PFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTANNLMQRKGFP--ESYDSNKLLTFLS 155 (311)
Q Consensus 83 PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~~~l~~rkGfP--eS~D~~~L~~~L~ 155 (311)
+=||...||+|||||||.-.|.+-+.-..+.+|.+||+|.| .--++.+=+--..--|.| -.+|..-|.+.|.
T Consensus 223 ~kvi~lVGPTGVGKTTTiAKLAA~~~l~~~kkVaLIT~DTY-RIgAvEQLktYa~Il~iPv~vv~~~~el~~al~ 296 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNY-RIAAIEQLKRYADTMGMPFYPVKDIKKFKETLA 296 (432)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC-CHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHH
T ss_conf 62999989999888999999999999974992799952665-377999999999985994599518999999998
No 52
>pfam08433 KTI12 Chromatin associated protein KTI12. This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II. The Elongator complex has histone acetyltransferase activity.
Probab=97.82 E-value=0.00012 Score=51.38 Aligned_cols=115 Identities=20% Similarity=0.306 Sum_probs=69.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCHHHCCCCHHHHHHHHHHHHHHH-HHCCCCE
Q ss_conf 999527866673379999999997338986899950887588268876000201898133128999999997-4126640
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTANNLMQRKGFPESYDSNKLLTFLSD-VKSGKKK 163 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~~~l~~rkGfPeS~D~~~L~~~L~~-lK~G~~~ 163 (311)
+|=|+|-++|||||.|+.|+..|.+ .+.+|.+|+.|....+... |+-....+.++. +++.
T Consensus 1 Livl~G~P~SGKSt~A~~L~~~l~~-~~~~v~vi~d~~~~~~~~~---------------y~~s~~Ek~~R~~l~s~--- 61 (266)
T pfam08433 1 LIILTGLPSSGKSTRAKELAKYLEE-KGYDVIVISDESLGIESDD---------------YKDSKKEKFLRGSLRSA--- 61 (266)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEECCCCCCCCCCC---------------CCCCHHHHHHHHHHHHH---
T ss_conf 9798579999688999999999997-5993899780012675310---------------00104789999999999---
Q ss_pred EEEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEE--CCCCCEEEEEECCHHHHHHHHHHHH
Q ss_conf 58740443225658983699868965997061003576545757774010--0023115773088999887998878
Q gi|254780827|r 164 VAVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMI--SDFLDFSIYIDADKRDIHRWYLNRF 238 (311)
Q Consensus 164 V~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~v--sD~fD~sIyVDad~~~i~~wyi~Rf 238 (311)
|. ..+.+.+|||+.|+|.-..-+ .+.++.. ...--..||++++.+.+.+|-.+|-
T Consensus 62 v~----------------r~Ls~~~iVIlD~~NYiKG~R----YEL~C~Ak~~~t~~c~v~~~~p~e~~~~~N~~r~ 118 (266)
T pfam08433 62 VK----------------RDLSKNTIVIVDSLNYIKGFR----YELYCIAKEAKTTYCVVYCKAPLDTCLKWNEERG 118 (266)
T ss_pred HH----------------HHHCCCCEEEECCCCCHHHHH----HHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCC
T ss_conf 98----------------751668889954874045689----9999999863888489996899899998621477
No 53
>PRK08356 hypothetical protein; Provisional
Probab=97.82 E-value=2.1e-05 Score=56.38 Aligned_cols=123 Identities=25% Similarity=0.332 Sum_probs=67.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHC-------HHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 799952786667337999999999733898689995088758826887600-------0201898133128999999997
Q gi|254780827|r 84 FVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTANN-------LMQRKGFPESYDSNKLLTFLSD 156 (311)
Q Consensus 84 fIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~~~-------l~~rkGfPeS~D~~~L~~~L~~ 156 (311)
.||||+|-.||||||+|+.|+.. + ...+|+.+-+.+ .+.... -..++|.|.--++..+...|+.
T Consensus 6 mIIgitG~~gSGK~tva~~l~~~----G---~~~~s~sd~lrd--~~~~~~~~~~~~~e~~~~~e~tre~l~~~~~~LR~ 76 (195)
T PRK08356 6 MIVGIAGKIAAGKTTVAKFLEEL----G---FCRISCSEPLID--ILTGNVSDYSWVPEVPFKGEPTRENLIELGRYLKE 76 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHC----C---CEEEECCHHHHH--HHHCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 69998589988789999999986----9---928842278999--98402320001155551479988999999999999
Q ss_pred HHCCCCEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHHHHHHHHH
Q ss_conf 41266405874044322565898369986896599706100357654575777401000231157730889998879988
Q gi|254780827|r 157 VKSGKKKVAVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADKRDIHRWYLN 236 (311)
Q Consensus 157 lK~G~~~V~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~i~~wyi~ 236 (311)
+.|.. +-+- ..-+ + +.+.+.++|+|+=-..-- -+.+.+.+..|+|+|+++.+.+|...
T Consensus 77 -~~G~~-i~a~----~~~~----~---i~~~~~vVIdgiR~~~Ev---------e~lk~~~~~lI~V~A~~~~R~eRl~~ 134 (195)
T PRK08356 77 -KYGED-ILIR----LAVD----K---LRHCKNIAIDGVRSRGEV---------EAIKRMGGKVIYVEAKPEIRFERLRR 134 (195)
T ss_pred -HHCCH-HHHH----HHHH----H---HHCCCCEEEECCCCHHHH---------HHHHHCCCEEEEEECCHHHHHHHHHH
T ss_conf -86925-8999----9999----9---744897899489988999---------99996599799996778789999997
Q ss_pred H
Q ss_conf 7
Q gi|254780827|r 237 R 237 (311)
Q Consensus 237 R 237 (311)
|
T Consensus 135 R 135 (195)
T PRK08356 135 R 135 (195)
T ss_pred C
T ss_conf 6
No 54
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=97.76 E-value=0.00026 Score=49.01 Aligned_cols=182 Identities=19% Similarity=0.232 Sum_probs=87.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 46899999998999999999999999989999987167766787679995278666733799999999973389868999
Q gi|254780827|r 39 PIDSTEIYKIYFPLSHLLLINVNSAKITCHQYNKFLNLKEESKIPFVVGITGSVAVGKSTFARILCILLQQISNFKVSLI 118 (311)
Q Consensus 39 ~i~~~ev~~iy~pl~~ll~~~~~~~~~~~~~~~~fl~~~~~~k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~li 118 (311)
.|+-+|..+.- -..|+.-......+.+..-..|.+ .|+|.||-|+|.+|+||||+|-.|..-| +- -.++
T Consensus 54 ~i~~~el~~~v--~~~l~~~~~~~~a~rY~~~r~~r~----~~~pliILigGtsGvGKSTlA~~LA~rL---gI--~~vi 122 (306)
T PRK04220 54 KITKEELRRRV--YYKLIEKDYEEIAEKYLLWRRIRK----SKEPIIILIGGASGVGTSTIAFELASRL---GI--RSVI 122 (306)
T ss_pred EECHHHHHHHH--HHHHHHHCCHHHHHHHHHHHHHHC----CCCCEEEEEECCCCCCHHHHHHHHHHHH---CC--CEEE
T ss_conf 63599999999--999998440999999999999853----6998799985899887899999999970---98--8342
Q ss_pred EECCCC------CCH--------HHHHHHCHHHCCCCHHHH-HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEE
Q ss_conf 508875------882--------688760002018981331-28999999997412664058740443225658983699
Q gi|254780827|r 119 TTDGFL------FPN--------AVLTANNLMQRKGFPESY-DSNKLLTFLSDVKSGKKKVAVPRYSHSQYDILEGEYDT 183 (311)
Q Consensus 119 s~DgF~------~~n--------~~l~~~~l~~rkGfPeS~-D~~~L~~~L~~lK~G~~~V~~PvYsh~~~D~vp~~~~v 183 (311)
+||.-- .+. +.-++...+. .+.+++. =+.++.+....+..|-..| +. . .
T Consensus 123 sTD~IREVmR~~~~~el~P~Lh~SSy~Awk~l~-~~~~~~~~~I~Gf~~Q~~~V~~gI~ai------------I~-R--a 186 (306)
T PRK04220 123 GTDSIREVMRKIISKELLPTLHESSYTAWKSLR-RPPWEEPDHILGFERHVEPVLVGVEAV------------IE-R--A 186 (306)
T ss_pred CCHHHHHHHHHCCCCCCCCHHHCCCHHHHHCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHH------------HH-H--H
T ss_conf 221699999852483017513227513100236-787786579999999999999999999------------99-9--9
Q ss_pred ECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 8689659970610035765457577740100023115773088999887998878887665201677799886
Q gi|254780827|r 184 IIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADKRDIHRWYLNRFLKLRETAFLNPRSYFHHF 256 (311)
Q Consensus 184 i~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~i~~wyi~Rf~~lr~~a~~~~~s~~~~y 256 (311)
+....=+||||+|+.-. .... ....-.+.+=|-+||. |++.-.+|+..|... ..+..+-|..++
T Consensus 187 ~~eg~slIIEGVHlvP~-~i~~---~~~~~~~vi~fll~i~-dEe~H~~RF~~Ra~~----~~R~~~rYl~~f 250 (306)
T PRK04220 187 LKEGISVIIEGVHIVPG-FIKE---KYLNMPNVFMFVLTLS-DEETHKARFYARARV----SKRPAERYLKHF 250 (306)
T ss_pred HHCCCCEEEEEECCCHH-HHHH---HHHCCCCEEEEEEEEC-CHHHHHHHHHHHCCC----CCCCHHHHHHHH
T ss_conf 97299689984303778-8777---7643883899999978-889999999985044----789878999979
No 55
>PRK00023 cmk cytidylate kinase; Provisional
Probab=97.76 E-value=3e-05 Score=55.38 Aligned_cols=37 Identities=30% Similarity=0.393 Sum_probs=27.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 6799952786667337999999999733898689995088758
Q gi|254780827|r 83 PFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLF 125 (311)
Q Consensus 83 PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~ 125 (311)
..||+|-|++||||||+|+.|..-|. ...+.|-.+|.
T Consensus 4 ~iIIaIDGpagSGKST~ak~lA~~L~------~~yldTG~~YR 40 (225)
T PRK00023 4 APVIAIDGPAGSGKGTVAKILAKKLG------FHYLDTGAMYR 40 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHC------CCEECHHHHHH
T ss_conf 97899658986787899999999939------88764109999
No 56
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.75 E-value=0.00016 Score=50.49 Aligned_cols=80 Identities=24% Similarity=0.266 Sum_probs=52.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH-HCCCCCEEEEEECCCCCCHHHHHHHCHHHCCCCH--HHHHHHHHHHHHHHHHCCC
Q ss_conf 999527866673379999999997-3389868999508875882688760002018981--3312899999999741266
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ-QISNFKVSLITTDGFLFPNAVLTANNLMQRKGFP--ESYDSNKLLTFLSDVKSGK 161 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~-~~~~~~V~lis~DgF~~~n~~l~~~~l~~rkGfP--eS~D~~~L~~~L~~lK~G~ 161 (311)
|+...|++|||||||.-.|.+-.. +.+..+|.+||+|.| .=-++.+=+--..--|.| -.++.+-|...|.+++..
T Consensus 178 V~alVGPTGVGKTTTiAKLAAr~~l~~g~~kVaLIT~DTY-RIgAvEQLktYa~IlgvPv~vv~~~~eL~~aL~~l~~~- 255 (404)
T PRK06995 178 VFALVGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSY-RIGGHEQLRIYGKILGVPVHAVKDAADLRLALAELRNK- 255 (404)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCC-CHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCC-
T ss_conf 5898668887637589999999999838983799976875-47899999999987595599959999999999970899-
Q ss_pred CEEEE
Q ss_conf 40587
Q gi|254780827|r 162 KKVAV 166 (311)
Q Consensus 162 ~~V~~ 166 (311)
.-|-+
T Consensus 256 dlILI 260 (404)
T PRK06995 256 HIVLI 260 (404)
T ss_pred CEEEE
T ss_conf 99998
No 57
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.74 E-value=9e-05 Score=52.11 Aligned_cols=111 Identities=19% Similarity=0.199 Sum_probs=65.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 99952786667337999999999733898689995088758826887600020189813312899999999741266405
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTANNLMQRKGFPESYDSNKLLTFLSDVKSGKKKV 164 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~~~l~~rkGfPeS~D~~~L~~~L~~lK~G~~~V 164 (311)
+|.|+|.+||||||+|+.|.+.+. -.++|.-.++..- -.++|+ . |.+|-. + + +
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g------l~~vsaG~iFR~~--A~e~gm-s------------l~ef~~-~-A-E--- 54 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG------LKLVSAGTIFREM--ARERGM-S------------LEEFSR-Y-A-E--- 54 (179)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHC------CCEEECCHHHHHH--HHHCCC-C------------HHHHHH-H-H-H---
T ss_conf 799617999970279999999829------7156212799999--998399-9------------999999-8-7-5---
Q ss_pred EEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHHHHHHHHHHH
Q ss_conf 87404432256589836998689659970610035765457577740100023115773088999887998878
Q gi|254780827|r 165 AVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADKRDIHRWYLNRF 238 (311)
Q Consensus 165 ~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~i~~wyi~Rf 238 (311)
.=|-.|..+..+.. + ... .+=+|+||=..- |. +.+.-|++||+.|+..++.+|.-.|.
T Consensus 55 ~~p~iD~~iD~rq~-e--~a~-~~nvVlegrLA~-----------Wi-~k~~adlkI~L~Apl~vRa~Ria~RE 112 (179)
T COG1102 55 EDPEIDKEIDRRQK-E--LAK-EGNVVLEGRLAG-----------WI-VREYADLKIWLKAPLEVRAERIAKRE 112 (179)
T ss_pred CCCHHHHHHHHHHH-H--HHH-CCCEEEHHHHHH-----------HH-HCCCCCEEEEEECCHHHHHHHHHHHC
T ss_conf 19216699889999-9--987-289587004578-----------87-33565468888575999999999860
No 58
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.73 E-value=4.8e-05 Score=53.98 Aligned_cols=68 Identities=22% Similarity=0.279 Sum_probs=45.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-C-----------------CCCEEEEEECCCCCCHHHHHHHCHHHCCCCHHHHH
Q ss_conf 99952786667337999999999733-8-----------------98689995088758826887600020189813312
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQI-S-----------------NFKVSLITTDGFLFPNAVLTANNLMQRKGFPESYD 146 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~-~-----------------~~~V~lis~DgF~~~n~~l~~~~l~~rkGfPeS~D 146 (311)
.+||.|++||||||++++|..++... + ..++..|++|.|+++....+.- +.|-|+.++
T Consensus 370 ~vaiVG~SGsGKSTL~~LL~gly~p~~G~I~idg~di~~~~~~~lr~~i~~V~Q~~~lF~~TI~eNi----~~~~~~~~~ 445 (581)
T PRK11176 370 TVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTVANNI----AYARTEQYS 445 (581)
T ss_pred EEECCCCCCCCHHHHHHHHHHHCCCCCCEEEECCEEHHHCCHHHHHCCCCCCCCCCEEECCCHHHHH----HCCCCCCCC
T ss_conf 4312289998678999999853667887487898851214766650345560777611077299997----226743245
Q ss_pred HHHHHHHHHH
Q ss_conf 8999999997
Q gi|254780827|r 147 SNKLLTFLSD 156 (311)
Q Consensus 147 ~~~L~~~L~~ 156 (311)
-+.+.+.++.
T Consensus 446 ~~~i~~a~~~ 455 (581)
T PRK11176 446 REQIEEAARM 455 (581)
T ss_pred HHHHHHHHHH
T ss_conf 6899999998
No 59
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.71 E-value=0.0002 Score=49.79 Aligned_cols=78 Identities=19% Similarity=0.190 Sum_probs=48.5
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCC---CCCEEEEEECCCCCCHHHHHHHCHHHCCCCH--HHHHHHHHHHHHH
Q ss_conf 8767999527866673379999999997338---9868999508875882688760002018981--3312899999999
Q gi|254780827|r 81 KIPFVVGITGSVAVGKSTFARILCILLQQIS---NFKVSLITTDGFLFPNAVLTANNLMQRKGFP--ESYDSNKLLTFLS 155 (311)
Q Consensus 81 k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~---~~~V~lis~DgF~~~n~~l~~~~l~~rkGfP--eS~D~~~L~~~L~ 155 (311)
..|-||...|++|||||||.-.|.+.+.-.. ..+|.+||+|-| ..-++.+=+.....-|.| -.++..-|.+-+.
T Consensus 172 ~k~~vi~lVGPTGvGKTTTiAKLAa~~~l~~~~k~~~V~lit~Dty-RigAveQLktya~il~vp~~v~~~~~dl~~~l~ 250 (388)
T PRK12723 172 LKKRIFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNY-RIGAKKQIQTYGDIMGIPVKAIESFKDLKEEIT 250 (388)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC-CHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHH
T ss_conf 5762899989988757879999999999862676773799980787-588999999999997880698578899999999
Q ss_pred HHHC
Q ss_conf 7412
Q gi|254780827|r 156 DVKS 159 (311)
Q Consensus 156 ~lK~ 159 (311)
+++.
T Consensus 251 ~~~~ 254 (388)
T PRK12723 251 QSKD 254 (388)
T ss_pred HHCC
T ss_conf 7249
No 60
>PRK06762 hypothetical protein; Provisional
Probab=97.68 E-value=8.8e-05 Score=52.18 Aligned_cols=103 Identities=17% Similarity=0.268 Sum_probs=65.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 99952786667337999999999733898689995088758826887600020189813312899999999741266405
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTANNLMQRKGFPESYDSNKLLTFLSDVKSGKKKV 164 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~~~l~~rkGfPeS~D~~~L~~~L~~lK~G~~~V 164 (311)
+|=|-|.|||||||+|+.|+.-+ + ..+.+|++|-. +|.++.-|+.|.+...+++...+.- |.
T Consensus 4 LIiiRGNSgSGKtT~Ak~L~~~~---G-~g~lLvsQD~v--------RR~mLr~kD~~g~~~i~Li~~~~~y---g~--- 65 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQERL---G-RGTLLVSQDVV--------RRDMLRVKDGPGNLSIDLIEQLVRY---GL--- 65 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH---C-CCCEEEEHHHH--------HHHHHHCCCCCCCCCHHHHHHHHHH---HH---
T ss_conf 89997888888789999999986---8-88578537589--------9998405577999786899999999---98---
Q ss_pred EEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCC---EEEEEECCHHHH
Q ss_conf 874044322565898369986896599706100357654575777401000231---157730889998
Q gi|254780827|r 165 AVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLD---FSIYIDADKRDI 230 (311)
Q Consensus 165 ~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD---~sIyVDad~~~i 230 (311)
...+.||+|||.-=-- ...+-....+.|. +.-|.|.+.+.-
T Consensus 66 --------------------~~~~~VIlEGIL~a~~-----Yg~ml~~l~~~~~~~~~~YY~Di~FeET 109 (166)
T PRK06762 66 --------------------QHCEFVILEGILNSDR-----YGPMLKELIHLFGGNAYTYYFDLSFEET 109 (166)
T ss_pred --------------------HCCCEEEEEEECCHHH-----HHHHHHHHHHHCCCCEEEEEEECCHHHH
T ss_conf --------------------5699899974100448-----9999999998657866999994877999
No 61
>TIGR00750 lao LAO/AO transport system ATPase; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli K-12, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase..
Probab=97.62 E-value=0.00014 Score=50.91 Aligned_cols=68 Identities=29% Similarity=0.383 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 99999999999999899999871--67766787679995278666733799999999973389868999508
Q gi|254780827|r 52 LSHLLLINVNSAKITCHQYNKFL--NLKEESKIPFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTD 121 (311)
Q Consensus 52 l~~ll~~~~~~~~~~~~~~~~fl--~~~~~~k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~D 121 (311)
|.|+|- +|++...-|...+.-| ..-+.+-.--+|||+|.||+||||+-..|-..|.+- .++|.+|-.|
T Consensus 6 LaraiT-LVEn~~p~H~~~a~~ll~~i~p~~GnA~~vG~TG~PGaGKSTl~~~l~~~lrRr-G~~VaViAvD 75 (333)
T TIGR00750 6 LARAIT-LVENEEPEHRELAKELLERILPKTGNAHVVGITGVPGAGKSTLVEKLIMELRRR-GLKVAVIAVD 75 (333)
T ss_pred HHHHHH-HHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC-CCEEEEEEEC
T ss_conf 867874-434879704799999999862432790787664688885777999998999765-9768999887
No 62
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.62 E-value=0.00028 Score=48.81 Aligned_cols=77 Identities=25% Similarity=0.300 Sum_probs=51.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH-HCCCCCEEEEEECCCCCCHHHHHHHCHHHCCCCH--HHHHHHHHHHHHHHHHC
Q ss_conf 67999527866673379999999997-3389868999508875882688760002018981--33128999999997412
Q gi|254780827|r 83 PFVVGITGSVAVGKSTFARILCILLQ-QISNFKVSLITTDGFLFPNAVLTANNLMQRKGFP--ESYDSNKLLTFLSDVKS 159 (311)
Q Consensus 83 PfIIGIAG~~asGKST~Ar~L~~lL~-~~~~~~V~lis~DgF~~~n~~l~~~~l~~rkGfP--eS~D~~~L~~~L~~lK~ 159 (311)
+=||..-|++|||||||--.|.+... .....+|.+||||.| .--+.-+-+.-.+--|.| -+++..-|..-+..++.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtY-RIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTY-RIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCC-HHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHC
T ss_conf 857999899887588799999999975325760689971441-1528999999999869955996399999999998531
Q ss_pred C
Q ss_conf 6
Q gi|254780827|r 160 G 160 (311)
Q Consensus 160 G 160 (311)
.
T Consensus 282 ~ 282 (407)
T COG1419 282 C 282 (407)
T ss_pred C
T ss_conf 8
No 63
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.62 E-value=0.00021 Score=49.64 Aligned_cols=79 Identities=27% Similarity=0.307 Sum_probs=54.6
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCHHHCCCC---HH--HHH-HHHHHHH
Q ss_conf 78767999527866673379999999997338986899950887588268876000201898---13--312-8999999
Q gi|254780827|r 80 SKIPFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTANNLMQRKGF---PE--SYD-SNKLLTF 153 (311)
Q Consensus 80 ~k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~~~l~~rkGf---Pe--S~D-~~~L~~~ 153 (311)
.+.|.||-.+|=+||||||+|-.|...|++ .+.+|-+|+.|=| .|-+.-+-+.+...-|. |+ .-| .+--.+-
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk-~~~kvllVaaD~~-RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~a 174 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKK-KGKKVLLVAADTY-RPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAA 174 (451)
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCC-CHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHH
T ss_conf 899858999815679748689999999997-4994589850567-86899999999986098531677889979999999
Q ss_pred HHHHHCC
Q ss_conf 9974126
Q gi|254780827|r 154 LSDVKSG 160 (311)
Q Consensus 154 L~~lK~G 160 (311)
|...|..
T Consensus 175 l~~ak~~ 181 (451)
T COG0541 175 LEKAKEE 181 (451)
T ss_pred HHHHHHC
T ss_conf 9999974
No 64
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.62 E-value=0.00095 Score=45.18 Aligned_cols=115 Identities=20% Similarity=0.258 Sum_probs=61.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 99952786667337999999999733898689995088758826887600020189813312899999999741266405
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTANNLMQRKGFPESYDSNKLLTFLSDVKSGKKKV 164 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~~~l~~rkGfPeS~D~~~L~~~L~~lK~G~~~V 164 (311)
+|-|+|-+||||||+|+.|+..+..- +.+|.+++.|.+- . .... .-+++ .++++.... ..|
T Consensus 1 Livl~GlP~SGKSt~a~~L~~~l~~~-~~~~i~~~~d~~~-~-----~~~~-----~~~~~-----Ek~~r~~~~--~~v 61 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELSKKLSEK-NIDNIILGTDLIR-E-----SFPV-----WKEKY-----EEFIRDSTL--YLI 61 (249)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHH-CCCEEEECCCCCH-H-----HHHH-----CCHHH-----HHHHHHHHH--HHH
T ss_conf 97896789998999999999999982-9965996552002-1-----2000-----33677-----999899999--999
Q ss_pred EEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEEC--CCCCEEEEEECCHHHHHHHHHHHH
Q ss_conf 87404432256589836998689659970610035765457577740100--023115773088999887998878
Q gi|254780827|r 165 AVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMIS--DFLDFSIYIDADKRDIHRWYLNRF 238 (311)
Q Consensus 165 ~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vs--D~fD~sIyVDad~~~i~~wyi~Rf 238 (311)
. ..+...++||+.++|....-+ . +.++..+ ..--..||++++.+.+.+|=.+|-
T Consensus 62 ~----------------~~l~~~~~vI~D~~nYiKg~R--Y--EL~clAk~~~t~~c~I~~~~p~e~c~~~N~~R~ 117 (249)
T TIGR03574 62 K----------------TALKNKYSVIVDDTNYYNSKR--R--DLINIAKEYNKNYIIIYLKAPLDTLLRRNIERG 117 (249)
T ss_pred H----------------HHHCCCCEEEECCCCHHHHHH--H--HHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCC
T ss_conf 9----------------984337669972732788999--9--999999984998699997399999999876068
No 65
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.62 E-value=7.9e-05 Score=52.51 Aligned_cols=49 Identities=22% Similarity=0.441 Sum_probs=36.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CC-----------------CCEEEEEECCCCCCHHHHHHH
Q ss_conf 99952786667337999999999733-89-----------------868999508875882688760
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQI-SN-----------------FKVSLITTDGFLFPNAVLTAN 133 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~-~~-----------------~~V~lis~DgF~~~n~~l~~~ 133 (311)
.+||.|++||||||++++|..++... +. .++..|++|.|+++....+.-
T Consensus 343 ~vaIVG~SGsGKSTLl~LL~g~y~p~~G~I~idg~di~~i~~~~lR~~I~~V~Q~~~LF~~TI~eNI 409 (569)
T PRK10789 343 MLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNI 409 (569)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHH
T ss_conf 8998799999879999999977642678746501013425768886314765887502566299998
No 66
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.62 E-value=0.00079 Score=45.75 Aligned_cols=76 Identities=25% Similarity=0.253 Sum_probs=48.7
Q ss_pred HHHHHHHHHHCCCCCCCCCE------EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCHHHC
Q ss_conf 98999998716776678767------999527866673379999999997338986899950887588268876000201
Q gi|254780827|r 65 ITCHQYNKFLNLKEESKIPF------VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTANNLMQR 138 (311)
Q Consensus 65 ~~~~~~~~fl~~~~~~k~Pf------IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~~~l~~r 138 (311)
.+....-..++.+-..-.|| ||.+.|..||||||++-.|...+.+- +.+|.++++|-| .+-+.-+=+..-.+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~l~~g~VIaLVGvnGvGKTTTiAKLA~~l~~~-gkkV~LVAaDTF-RaAAiEQLk~~g~r 259 (407)
T PRK12726 182 DITDWFVPYLSGKLAVEDSFDLSNHRIISLIGQTGVGKTTTLVKLGWQLLKQ-NRTVGFITTDTF-RSGAVEQFQGYADK 259 (407)
T ss_pred HHHHHHHHHHCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCC-CHHHHHHHHHHHHH
T ss_conf 4068999975389770320230369089998999897899999999999977-991799970667-78899999999999
Q ss_pred CCCH
Q ss_conf 8981
Q gi|254780827|r 139 KGFP 142 (311)
Q Consensus 139 kGfP 142 (311)
-|.|
T Consensus 260 lgVp 263 (407)
T PRK12726 260 LDVE 263 (407)
T ss_pred HCCE
T ss_conf 7964
No 67
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=97.62 E-value=0.00019 Score=49.90 Aligned_cols=30 Identities=37% Similarity=0.558 Sum_probs=24.1
Q ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 6678767999527866673379999999997
Q gi|254780827|r 78 EESKIPFVVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 78 ~~~k~PfIIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
...++| ||.|=|++||||||+|+.|..-|.
T Consensus 438 ~~~~~p-IIaIDGpagsGKsT~ak~lA~~l~ 467 (662)
T PRK11860 438 AAARIP-VICIDGPTASGKGTLAAAVAQALG 467 (662)
T ss_pred CCCCCC-EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 456787-899657875686899999999959
No 68
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.61 E-value=7.3e-05 Score=52.73 Aligned_cols=98 Identities=24% Similarity=0.434 Sum_probs=56.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CC-----------------CCEEEEEECCCCCCHHHHHHHCHHHCCCCHHHHH
Q ss_conf 99952786667337999999999733-89-----------------8689995088758826887600020189813312
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQI-SN-----------------FKVSLITTDGFLFPNAVLTANNLMQRKGFPESYD 146 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~-~~-----------------~~V~lis~DgF~~~n~~l~~~~l~~rkGfPeS~D 146 (311)
.|||.|++||||||++++|..++... +. ..+..|++|.|+++....+.- +.|-|+.-|
T Consensus 363 ~vaiVG~SGsGKSTL~~LL~gly~p~~G~I~idg~di~~i~~~~lR~~i~~V~Q~~~LF~gTI~eNI----~~g~~~~sd 438 (585)
T PRK13657 363 TVAIVGPTGAGKSTLINLLHRVFDPQSGRIRIDGTDIRTVTRASLRRNIGVVFQEAGLFNRSIEDNL----RVGRPDATD 438 (585)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCEEECCEECHHCCHHHHHHHCCEECCCCCCCCHHHHHHH----HCCCCCCCH
T ss_conf 8999889898699999998601578879675898961016899998525221667635476599887----527999986
Q ss_pred H--------HHHHHHHHHHHCCCCEEEEECCCCCCCCC---CC-CCEE-------EECCCCEEEEEC
Q ss_conf 8--------99999999741266405874044322565---89-8369-------986896599706
Q gi|254780827|r 147 S--------NKLLTFLSDVKSGKKKVAVPRYSHSQYDI---LE-GEYD-------TIIQPDILLIEG 194 (311)
Q Consensus 147 ~--------~~L~~~L~~lK~G~~~V~~PvYsh~~~D~---vp-~~~~-------vi~~pdIIIvEG 194 (311)
- ..+.+|+.++..| |+...+++ .. |+.+ ...+|+|+|+.=
T Consensus 439 ~ei~~a~~~a~~~~~I~~lp~G--------~dT~vge~G~~LSGGQrQRialARAll~~p~IliLDE 497 (585)
T PRK13657 439 EEMRAAAERAQALDFIERKEDG--------YDTVVGERGRQLSGGERQRLAIARALLKDPPILILDE 497 (585)
T ss_pred HHHHHHHHHHCCHHHHHHCCCC--------CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 8899999984327999717566--------6680137888689999999999999946989899868
No 69
>PRK10867 signal recognition particle protein; Provisional
Probab=97.61 E-value=0.00016 Score=50.41 Aligned_cols=55 Identities=25% Similarity=0.319 Sum_probs=43.8
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHC
Q ss_conf 67876799952786667337999999999733898689995088758826887600
Q gi|254780827|r 79 ESKIPFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTANN 134 (311)
Q Consensus 79 ~~k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~~~ 134 (311)
..+.|+||-++|-.||||||+|-.|...++.-...+|.+++.|-| .|-+.-+=+.
T Consensus 96 ~~~~p~VIm~vGLqGsGKTTT~aKLA~~lk~k~~k~vllvaaDt~-RpaA~eQL~~ 150 (453)
T PRK10867 96 AAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVY-RPAAIKQLET 150 (453)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC-HHHHHHHHHH
T ss_conf 789996999974688851858999999999738983798558877-0589999999
No 70
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.61 E-value=0.00014 Score=50.82 Aligned_cols=100 Identities=19% Similarity=0.319 Sum_probs=59.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CC-----------------CCEEEEEECCCCCCHHHHHHHCHHHCCCC-----
Q ss_conf 99952786667337999999999733-89-----------------86899950887588268876000201898-----
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQI-SN-----------------FKVSLITTDGFLFPNAVLTANNLMQRKGF----- 141 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~-~~-----------------~~V~lis~DgF~~~n~~l~~~~l~~rkGf----- 141 (311)
.+||.|++||||||++++|..++... +. ..+..|++|.|++.....+.-..- +.+
T Consensus 369 ~vaIVG~SGsGKSTL~~LL~rly~p~~G~I~idG~di~~i~~~~lR~~i~~V~Q~~~LF~gTI~eNi~~g--~~~~~~~i 446 (593)
T PRK10790 369 FVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLG--RDISEEQV 446 (593)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHH--CCCCHHHH
T ss_conf 8998799988689999999985567899416599324424688886315751666514565299997760--02367999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC---CC-CCEE-------EECCCCEEEEEC
Q ss_conf 13312899999999741266405874044322565---89-8369-------986896599706
Q gi|254780827|r 142 PESYDSNKLLTFLSDVKSGKKKVAVPRYSHSQYDI---LE-GEYD-------TIIQPDILLIEG 194 (311)
Q Consensus 142 PeS~D~~~L~~~L~~lK~G~~~V~~PvYsh~~~D~---vp-~~~~-------vi~~pdIIIvEG 194 (311)
-++-....+.+|+.++..|- +....++ .. |+.+ ...+|+|+|+.=
T Consensus 447 ~~a~~~a~l~~~i~~lp~G~--------dT~vge~G~~LSgGQrQRiaiARall~~p~iliLDE 502 (593)
T PRK10790 447 WQALETVQLAELARSLSDGL--------YTPLGEQGNTLSVGQKQLLALARVLVETPQILILDE 502 (593)
T ss_pred HHHHHHHHHHHHHHHCCCHH--------CCHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 99999977899998574201--------044238768879999999999999955989999838
No 71
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.60 E-value=0.00043 Score=47.49 Aligned_cols=87 Identities=25% Similarity=0.275 Sum_probs=56.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH-HCCCCCEEEEEECCCCCCHHH--HHHHCHHHCCCCH--HHHHHHHHHHHHHHHHC
Q ss_conf 999527866673379999999997-338986899950887588268--8760002018981--33128999999997412
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ-QISNFKVSLITTDGFLFPNAV--LTANNLMQRKGFP--ESYDSNKLLTFLSDVKS 159 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~-~~~~~~V~lis~DgF~~~n~~--l~~~~l~~rkGfP--eS~D~~~L~~~L~~lK~ 159 (311)
|+..-|++|||||||.-.|...+. +.+..+|.+||||.| .--++ |..-|-+ -|.| -.+|-.-|...|..+..
T Consensus 350 v~AlvGpTGvGKTTT~aKlAa~~~~~~g~~~valit~Dty-Riga~eQL~~y~~i--lgvpv~~~~~~~~l~~~l~~l~~ 426 (557)
T PRK12727 350 VIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQ-RVGGREQLHSYGRQ--LGIAVHEADSAESLLDLLERLRD 426 (557)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCC-CHHHHHHHHHHHHH--HCCEEEEECCHHHHHHHHHHHCC
T ss_conf 4787437776731179999999999739981899972664-08799999999998--39757982899999999998369
Q ss_pred CCCEEEEECCCCCCCC
Q ss_conf 6640587404432256
Q gi|254780827|r 160 GKKKVAVPRYSHSQYD 175 (311)
Q Consensus 160 G~~~V~~PvYsh~~~D 175 (311)
. .-|-+=.=-+...|
T Consensus 427 ~-~lvliDTaG~~~rd 441 (557)
T PRK12727 427 Y-KLVLIDTAGMGQRD 441 (557)
T ss_pred C-CEEEEECCCCCCCC
T ss_conf 9-98999499988469
No 72
>TIGR00959 ffh signal recognition particle protein; InterPro: IPR004780 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents various SRP subunits.; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=97.58 E-value=0.00036 Score=48.06 Aligned_cols=79 Identities=30% Similarity=0.414 Sum_probs=58.0
Q ss_pred HHHHHHHHCCC---C-----CCCCCEEEEEECCCCCCHHHHHHHHHHH-HHHCCCCCEEEEEECCCCCCHHHHHHHCHHH
Q ss_conf 99999871677---6-----6787679995278666733799999999-9733898689995088758826887600020
Q gi|254780827|r 67 CHQYNKFLNLK---E-----ESKIPFVVGITGSVAVGKSTFARILCIL-LQQISNFKVSLITTDGFLFPNAVLTANNLMQ 137 (311)
Q Consensus 67 ~~~~~~fl~~~---~-----~~k~PfIIGIAG~~asGKST~Ar~L~~l-L~~~~~~~V~lis~DgF~~~n~~l~~~~l~~ 137 (311)
+...-.+||.+ + ..+.|-+|=.+|=+||||||||-.|... |.+-.+++|-+|++|=| +|-|.
T Consensus 78 ~eEL~~~LG~~~~E~~~L~~~~~~P~vilmvGLQGsGKTTt~gKLA~~ll~kk~~~kvLLva~D~y-RPAA~-------- 148 (439)
T TIGR00959 78 HEELVAILGGKGRESAELKLAEKRPTVILMVGLQGSGKTTTAGKLALYLLKKKEGKKVLLVACDLY-RPAAI-------- 148 (439)
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEHHCC-CHHHH--------
T ss_conf 689998516667325675556786838997313788578899999999999863897034032103-47899--------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 1898133128999999997412664058740443
Q gi|254780827|r 138 RKGFPESYDSNKLLTFLSDVKSGKKKVAVPRYSH 171 (311)
Q Consensus 138 rkGfPeS~D~~~L~~~L~~lK~G~~~V~~PvYsh 171 (311)
+-|..| |+ .|.+|+|.|
T Consensus 149 --------------~QL~~L--g~-Q~gVpvf~h 165 (439)
T TIGR00959 149 --------------EQLKVL--GE-QVGVPVFAH 165 (439)
T ss_pred --------------HHHHHH--HH-HCCCCCCCC
T ss_conf --------------999997--67-528871100
No 73
>PRK10416 cell division protein FtsY; Provisional
Probab=97.56 E-value=0.00041 Score=47.69 Aligned_cols=49 Identities=37% Similarity=0.415 Sum_probs=40.2
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHH
Q ss_conf 678767999527866673379999999997338986899950887588268
Q gi|254780827|r 79 ESKIPFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAV 129 (311)
Q Consensus 79 ~~k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~ 129 (311)
..+.||||-+.|--||||||++-.|...+++- +.+|.++..|-| ++-+.
T Consensus 291 ~~~~P~VIl~vGvNG~GKTTTigKLA~~~~~~-gkkVllaA~DTf-RaAAi 339 (499)
T PRK10416 291 EGKTPFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLAAGDTF-RAAAV 339 (499)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCC-CHHHH
T ss_conf 89998799997478787898999999999977-995378840667-56899
No 74
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.56 E-value=0.00064 Score=46.36 Aligned_cols=64 Identities=27% Similarity=0.284 Sum_probs=46.2
Q ss_pred HHHHHHHHHCCC-CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHH
Q ss_conf 899999871677-667876799952786667337999999999733898689995088758826887
Q gi|254780827|r 66 TCHQYNKFLNLK-EESKIPFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLT 131 (311)
Q Consensus 66 ~~~~~~~fl~~~-~~~k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~ 131 (311)
++......||.. .....|.||-++|-.||||||+|-.|...+++- +.+|.+++.|-| .|-+.-+
T Consensus 79 v~~eL~~llg~~~~~~~kP~Vim~vGlqGsGKTTT~aKLA~~~kk~-g~kv~lvaaDt~-RpaA~eQ 143 (433)
T PRK00771 79 VYEELVKLLGEEAEILLKPQTILLVGLQGSGKTTTAAKLARYFQKK-GLKVGVICADTW-RPGAYEQ 143 (433)
T ss_pred HHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCC-CHHHHHH
T ss_conf 9999999849676566898589997378897899999999999977-994678506788-3689999
No 75
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.56 E-value=0.00074 Score=45.93 Aligned_cols=97 Identities=24% Similarity=0.372 Sum_probs=53.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 67999527866673379999999997338986899950887588268876000201898133128999999997412664
Q gi|254780827|r 83 PFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTANNLMQRKGFPESYDSNKLLTFLSDVKSGKK 162 (311)
Q Consensus 83 PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~~~l~~rkGfPeS~D~~~L~~~L~~lK~G~~ 162 (311)
+-||||+|-++|||||+...|-..|.+- +.+|..|-.|+=-++ +++.| .+||-+.. +|..
T Consensus 1 mkii~ivG~snSGKTTLi~kli~~l~~~-G~~V~~iKH~~H~f~---------~D~~G-kDS~r~~~---------AGA~ 60 (159)
T cd03116 1 MKVIGFVGYSGSGKTTLLEKLIPALSAR-GLRVAVIKHDHHDFD---------IDTPG-KDSYRHRE---------AGAE 60 (159)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHC-CCEEEEEEECCCCCC---------CCCCC-CHHHHHHH---------CCCC
T ss_conf 9299999679999999999999999977-985989973476777---------77898-44177675---------2973
Q ss_pred EE--EEEC----CCCCCCCCCCC--CEEEECCCCEEEEECCHHCC
Q ss_conf 05--8740----44322565898--36998689659970610035
Q gi|254780827|r 163 KV--AVPR----YSHSQYDILEG--EYDTIIQPDILLIEGINVLQ 199 (311)
Q Consensus 163 ~V--~~Pv----Ysh~~~D~vp~--~~~vi~~pdIIIvEGi~vL~ 199 (311)
.| .-|. +........+. ........|+|||||.--..
T Consensus 61 ~v~v~s~~~~~l~~~~~~~~~~~~~~~~~~~~~DlvlvEG~K~~~ 105 (159)
T cd03116 61 EVLVSSPRRWALIRELRDEPEPDLLLLLRLLDVDLVLVEGFKEEP 105 (159)
T ss_pred EEEEECCCEEEEEEECCCCCCCCHHHHHHCCCCCEEEEECCCCCC
T ss_conf 799975671887774468888729999626788899983466788
No 76
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.54 E-value=0.00026 Score=48.99 Aligned_cols=45 Identities=33% Similarity=0.467 Sum_probs=34.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHH
Q ss_conf 99952786667337999999999733898689995088758826887
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLT 131 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~ 131 (311)
||..+|++||||||+.-.|...+.+ .+.+|.+|++|-| ...+..+
T Consensus 2 Vi~lvGptGvGKTTTiaKLA~~~~~-~~~kV~lit~Dt~-R~gA~eQ 46 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKK-KGKKVLLVAADTY-RPAAIEQ 46 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCC-CHHHHHH
T ss_conf 9999899999889999999999997-6992899974887-5779999
No 77
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.53 E-value=0.00069 Score=46.13 Aligned_cols=77 Identities=22% Similarity=0.224 Sum_probs=46.6
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCHHHCCCCH--HHHHHHHHHHHHHHHH
Q ss_conf 87679995278666733799999999973389868999508875882688760002018981--3312899999999741
Q gi|254780827|r 81 KIPFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTANNLMQRKGFP--ESYDSNKLLTFLSDVK 158 (311)
Q Consensus 81 k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~~~l~~rkGfP--eS~D~~~L~~~L~~lK 158 (311)
|.-=-|+..||+|||||||.-.|.+-+. ..+.+|.+||+|.| .--++-+-+.-..--|.| -.+|-.-|...|..++
T Consensus 239 ~~~q~IALVGPTGVGKTTTIAKLAArf~-~~~KkVALITtDTY-RIGAVEQLKTYAeIMgVPV~VV~dp~eL~~AL~~lk 316 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFH-GKKKTVGFITTDHS-RIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK 316 (436)
T ss_pred HHCEEEEEECCCCCCHHHHHHHHHHHHH-CCCCEEEEEECCCC-HHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHH
T ss_conf 4171799989999888999999999986-16980899980663-476999999999984994399688899999999876
Q ss_pred C
Q ss_conf 2
Q gi|254780827|r 159 S 159 (311)
Q Consensus 159 ~ 159 (311)
.
T Consensus 317 d 317 (436)
T PRK11889 317 E 317 (436)
T ss_pred H
T ss_conf 3
No 78
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=97.52 E-value=0.0014 Score=44.01 Aligned_cols=99 Identities=21% Similarity=0.247 Sum_probs=59.8
Q ss_pred HHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCHHHCCCCHHH
Q ss_conf 98999998716776678767999527866673379999999997338986899950887588268876000201898133
Q gi|254780827|r 65 ITCHQYNKFLNLKEESKIPFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTANNLMQRKGFPES 144 (311)
Q Consensus 65 ~~~~~~~~fl~~~~~~k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~~~l~~rkGfPeS 144 (311)
.+....+.|.+.+. +.-.+|||+|. -||||++..+..+|+.. +.++.++.|=|+.+++.....-. .-.|++
T Consensus 95 al~~la~~fy~~ps--~~l~vigVTGT--NGKTTt~~~i~~il~~~-g~~~~~iGTlg~~~~~~~~~~~~----~TTP~~ 165 (953)
T PRK11929 95 ALGELADEWYGKPS--QDLSVVAVTGT--NGKTSCAQWLAQMLTRL-GKPCGSIGTLGARLPDGQSLGGS----LTTPDV 165 (953)
T ss_pred HHHHHHHHHHCCCC--CCCCEEEEECC--CCHHHHHHHHHHHHHHC-CCCEEEECCCCEECCCCCCCCCC----CCCCCH
T ss_conf 99999999864967--58878999799--97999999999999867-99889983245405876446789----999489
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 128999999997412664058740443225
Q gi|254780827|r 145 YDSNKLLTFLSDVKSGKKKVAVPRYSHSQY 174 (311)
Q Consensus 145 ~D~~~L~~~L~~lK~G~~~V~~PvYsh~~~ 174 (311)
.++-.++..+.+ +|...+..-+-||...
T Consensus 166 ~~l~~~l~~~~~--~g~~~~vmEvSSHgL~ 193 (953)
T PRK11929 166 ITLHRLLARMRA--AGADAVAMEASSHGLE 193 (953)
T ss_pred HHHHHHHHHHHH--CCCCEEEEEECHHHHH
T ss_conf 999999999997--6997999983306776
No 79
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.51 E-value=0.00013 Score=50.93 Aligned_cols=98 Identities=17% Similarity=0.247 Sum_probs=55.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC-----------------CCEEEEEECCCCCCHHHHHHHCHHHCCCCHH----
Q ss_conf 9995278666733799999999973389-----------------8689995088758826887600020189813----
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISN-----------------FKVSLITTDGFLFPNAVLTANNLMQRKGFPE---- 143 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~-----------------~~V~lis~DgF~~~n~~l~~~~l~~rkGfPe---- 143 (311)
.+||.|++||||||++++|......-+. .++..|++|.|+++....+.-- .|-|+
T Consensus 378 ~vaIVG~SGsGKSTl~~LL~g~~p~~G~I~i~g~di~~i~~~~lr~~i~~V~Q~~~LF~~TI~eNI~----~g~~~atde 453 (588)
T PRK11174 378 RVALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHLSWVGQNPQLFHGTLRDNVL----LANPDASDE 453 (588)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCEEEECCEECCCCCHHHHHHHEEEECCCCCCCCCCHHHHHH----CCCCCCCHH
T ss_conf 8999899986499999999872898838999998603089999996603516667777662998653----358543345
Q ss_pred ----HHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC---CC-CCEE-------EECCCCEEEEEC
Q ss_conf ----312899999999741266405874044322565---89-8369-------986896599706
Q gi|254780827|r 144 ----SYDSNKLLTFLSDVKSGKKKVAVPRYSHSQYDI---LE-GEYD-------TIIQPDILLIEG 194 (311)
Q Consensus 144 ----S~D~~~L~~~L~~lK~G~~~V~~PvYsh~~~D~---vp-~~~~-------vi~~pdIIIvEG 194 (311)
+-....+.+|+.++..| |+....++ .. |+.+ ...+|+|+|+.=
T Consensus 454 ei~~A~~~a~~~~~I~~Lp~G--------ldT~vge~G~~LSGGQrQRiaiARAll~~~~ILILDE 511 (588)
T PRK11174 454 QLQQALENAWVSEFVPLLPQG--------LDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDE 511 (588)
T ss_pred HHHHHHHHHHHHHHHHHCCCC--------CCCHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 799999986247899845132--------2363228888779999999999999837989899989
No 80
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.47 E-value=0.00016 Score=50.43 Aligned_cols=120 Identities=22% Similarity=0.270 Sum_probs=65.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC--CCHHHHHHHCHHHCC-CCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9995278666733799999999973389868999508875--882688760002018-9813312899999999741266
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFL--FPNAVLTANNLMQRK-GFPESYDSNKLLTFLSDVKSGK 161 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~--~~n~~l~~~~l~~rk-GfPeS~D~~~L~~~L~~lK~G~ 161 (311)
||||+|++|+||||+-..|...+.+ ...+|.+++.|=-- ---+.|-.|-.|..- ..|..| ++.+-++.
T Consensus 1 viGitG~pGaGKStLi~~l~~~~~~-~g~~VaVlavDPsS~~sgGalLGDRiRm~~~~~~~~vf--------iRs~atrg 71 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRA-RGKRVAVLAIDPSSPFSGGAILGDRIRMERHASDPGVF--------IRSLATRG 71 (148)
T ss_pred CEEECCCCCCCHHHHHHHHHHHHHH-CCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCEE--------EEECCCCC
T ss_conf 9762589978789999999999997-89837999968887866862032354534415799836--------86346666
Q ss_pred CEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCH
Q ss_conf 405874044322565898369986896599706100357654575777401000231157730889
Q gi|254780827|r 162 KKVAVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADK 227 (311)
Q Consensus 162 ~~V~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~ 227 (311)
.. ---++.+.+.+. ......-|+||||=.=+.|.+ ..+.++.|+.|||-.+.
T Consensus 72 ~~---ggla~~~~~~i~--~l~~~g~D~IiIETvGvGQse---------~~i~~~aD~~i~v~~p~ 123 (148)
T cd03114 72 FL---GGLSRATPEVIR--VLDAAGFDVIIVETVGVGQSE---------VDIASMADTTVVVMAPG 123 (148)
T ss_pred CC---CCHHHHHHHHHH--HHHHCCCCEEEEECCCCCCCH---------HHHHHHCCEEEEEECCC
T ss_conf 54---204688999999--999759998999748777560---------26554356699996368
No 81
>PRK12338 hypothetical protein; Provisional
Probab=97.40 E-value=0.00017 Score=50.28 Aligned_cols=38 Identities=32% Similarity=0.462 Sum_probs=29.8
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 8767999527866673379999999997338986899950887
Q gi|254780827|r 81 KIPFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGF 123 (311)
Q Consensus 81 k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF 123 (311)
|.|+||-|.|.||+||||+|..|. ++++- ..+|+||.-
T Consensus 2 r~PliILiGGtSGvGKSTlAseLA---sRLgI--~tvIsTDsI 39 (320)
T PRK12338 2 RKPYVILIGSASGIGKSTIASEVA---RRLNI--KHLIETDFI 39 (320)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH---HHCCC--CEEECCHHH
T ss_conf 976799970688876888999999---85198--711033479
No 82
>TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetases; InterPro: IPR005761 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents DP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligases (MurE; 6.3.2.13 from EC). An exception is found with Staphylococcus aureus, in which diaminopimelate is replaced by lysine in the peptidoglycan and MurE is (6.3.2.7 from EC). The Mycobacteria, part of the closest neighbouring branch outside of the low-GC Gram-positive bacteria, use diaminopimelate.; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=97.38 E-value=0.0019 Score=43.08 Aligned_cols=102 Identities=23% Similarity=0.295 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHH-HHHCHHHCCCCH
Q ss_conf 9989999987167766787679995278666733799999999973389868999508875882688-760002018981
Q gi|254780827|r 64 KITCHQYNKFLNLKEESKIPFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVL-TANNLMQRKGFP 142 (311)
Q Consensus 64 ~~~~~~~~~fl~~~~~~k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l-~~~~l~~rkGfP 142 (311)
..+....+.|.+.+++... ||||+|- -||||++..+..+|...+ +++.+|+|=||-.++..+ ....-. --|
T Consensus 71 ~~~~~~A~~fY~~Ps~~l~--viGvTGT--NGKTtt~~li~~~l~~~G-~~tgliGT~g~~~~g~~~~~~~~~~---TTP 142 (494)
T TIGR01085 71 HALSSLAAAFYGHPSKKLK--VIGVTGT--NGKTTTTSLIAQLLELLG-KKTGLIGTIGYRLGGNELIKDPASL---TTP 142 (494)
T ss_pred HHHHHHHHHHHCCCCCCEE--EEEEEEC--CCCHHHHHHHHHHHHHCC-CEEEEEEEEEEECCCCCCCCCCCCC---CCC
T ss_conf 8889999997348552516--8999712--874489999999998679-7089986545304776312665556---799
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf 331289999999974126640587404432256
Q gi|254780827|r 143 ESYDSNKLLTFLSDVKSGKKKVAVPRYSHSQYD 175 (311)
Q Consensus 143 eS~D~~~L~~~L~~lK~G~~~V~~PvYsh~~~D 175 (311)
++.++-.+++-+.+. |...+-.=+=||...-
T Consensus 143 ~~~~~q~~L~~~~~~--g~~~~v~EvSSHaL~q 173 (494)
T TIGR01085 143 EALTLQKTLAEMVEA--GAQYAVMEVSSHALAQ 173 (494)
T ss_pred CCHHHHHHHHHHHHC--CCCEEEEEEEHHHHHC
T ss_conf 718999999999965--9979999863012421
No 83
>TIGR02533 type_II_gspE general secretory pathway protein E; InterPro: IPR013369 GspE, the E protein of the type II secretion system, is also referred to as the main terminal branch of the general secretion pathway. ; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex.
Probab=97.37 E-value=0.00019 Score=49.96 Aligned_cols=39 Identities=26% Similarity=0.449 Sum_probs=30.3
Q ss_pred CCCE-EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 8767-99952786667337999999999733898689995088
Q gi|254780827|r 81 KIPF-VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDG 122 (311)
Q Consensus 81 k~Pf-IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~Dg 122 (311)
++|+ ||=|+||+||||||| |=.-|++.....+-++|.-+
T Consensus 242 ~rpHGIiLVTGPTGSGKtTT---LYaaL~~LN~~~~NIlTvED 281 (495)
T TIGR02533 242 KRPHGIILVTGPTGSGKTTT---LYAALSRLNTPERNILTVED 281 (495)
T ss_pred HCCCCEEEECCCCCCCHHHH---HHHHHHHHCCCCCCEEEEEC
T ss_conf 18896188417789852588---99999863589971568657
No 84
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.37 E-value=0.00034 Score=48.19 Aligned_cols=101 Identities=25% Similarity=0.354 Sum_probs=55.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-C-----------------CCEEEEEECCCCCCHHHHHHHCHHHCCCCHHHH-
Q ss_conf 999527866673379999999997338-9-----------------868999508875882688760002018981331-
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQIS-N-----------------FKVSLITTDGFLFPNAVLTANNLMQRKGFPESY- 145 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~-~-----------------~~V~lis~DgF~~~n~~l~~~~l~~rkGfPeS~- 145 (311)
.|||.|.+||||||++|+|.-++.... . ..|.+|++|+|++.-+..+.-. .|.|++=
T Consensus 501 ~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~----l~~p~~~~ 576 (709)
T COG2274 501 KVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIA----LGNPEATD 576 (709)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEHHHCCHHHHHHHEEEECCCCHHHCCCHHHHHH----CCCCCCCH
T ss_conf 89998799998899999983678888855999987278669999986546874665320473987974----68999997
Q ss_pred -------HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEE-------EECCCCEEEEE
Q ss_conf -------2899999999741266405874044322565898369-------98689659970
Q gi|254780827|r 146 -------DSNKLLTFLSDVKSGKKKVAVPRYSHSQYDILEGEYD-------TIIQPDILLIE 193 (311)
Q Consensus 146 -------D~~~L~~~L~~lK~G~~~V~~PvYsh~~~D~vp~~~~-------vi~~pdIIIvE 193 (311)
...+.-+|+.++..|- ..|+-.+...= .-|+.+ .+.+|.|+|+.
T Consensus 577 e~i~~A~~~ag~~~fI~~lP~gy---~t~v~E~G~~L-SGGQrQrlalARaLl~~P~ILlLD 634 (709)
T COG2274 577 EEIIEAAQLAGAHEFIENLPMGY---DTPVGEGGANL-SGGQRQRLALARALLSKPKILLLD 634 (709)
T ss_pred HHHHHHHHHHCCHHHHHHCCCCC---CCCCCCCCCCC-CHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 99999999837689998360545---62320489888-888999999999854699989970
No 85
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=97.37 E-value=0.00025 Score=49.16 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 99952786667337999999999
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILL 107 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL 107 (311)
+|.|-|..||||||+++.|+..+
T Consensus 1 lI~iEG~iGsGKSTl~~~L~~~~ 23 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHL 23 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98998888888999999999966
No 86
>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional
Probab=97.36 E-value=0.0021 Score=42.85 Aligned_cols=94 Identities=26% Similarity=0.312 Sum_probs=57.7
Q ss_pred HHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCHHHCCCCHHHHHH
Q ss_conf 99998716776678767999527866673379999999997338986899950887588268876000201898133128
Q gi|254780827|r 68 HQYNKFLNLKEESKIPFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTANNLMQRKGFPESYDS 147 (311)
Q Consensus 68 ~~~~~fl~~~~~~k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~~~l~~rkGfPeS~D~ 147 (311)
...+.|.+. +. +...||||+|+. ||||++..+..+|+..+ .++.+++|-|+...+... ..+ .--|++.++
T Consensus 87 ~la~~~y~~-~~-~~l~vIgITGTn--GKTTt~~~l~~iL~~~g-~~~~~igT~g~~~~~~~~-~~~----lTTP~~l~L 156 (481)
T PRK00139 87 LLAAAFYGN-PS-DKLKLIGVTGTN--GKTTTAYLIAQILRLLG-KKAALIGTLGNGLGGTLI-PSG----LTTPEALDL 156 (481)
T ss_pred HHHHHHHCC-CH-HCCCEEEEECCC--CCHHHHHHHHHHHHHCC-CCCEEECCCCEECCCEEC-CCC----CCCCCHHHH
T ss_conf 999998708-04-318089995899--84349999999998749-863143022114187303-667----898876889
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 99999999741266405874044322
Q gi|254780827|r 148 NKLLTFLSDVKSGKKKVAVPRYSHSQ 173 (311)
Q Consensus 148 ~~L~~~L~~lK~G~~~V~~PvYsh~~ 173 (311)
..++..+. ..|...+-.-+=||..
T Consensus 157 ~~~l~~~~--e~g~~~~vmEvSShgl 180 (481)
T PRK00139 157 QRLLAEAV--DAGATHVAMEVSSHAL 180 (481)
T ss_pred HHHHHHHH--HCCCCEEEEEECHHHH
T ss_conf 99999999--8799779998430355
No 87
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.35 E-value=0.00013 Score=50.98 Aligned_cols=48 Identities=29% Similarity=0.399 Sum_probs=35.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-C-----------------CCCEEEEEECCCCCCHHHHHH
Q ss_conf 99952786667337999999999733-8-----------------986899950887588268876
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQI-S-----------------NFKVSLITTDGFLFPNAVLTA 132 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~-~-----------------~~~V~lis~DgF~~~n~~l~~ 132 (311)
++||.|++||||||++++|..++... + ..++..|++|.++++....+.
T Consensus 42 ~vaIvG~sGsGKSTL~~ll~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~eN 107 (226)
T cd03248 42 VTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDN 107 (226)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHCCHHHHHHCEEEEECCCEECCCCHHHH
T ss_conf 999999999849999999964546788789999999344899999732699924795767735666
No 88
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.33 E-value=0.00019 Score=49.93 Aligned_cols=48 Identities=23% Similarity=0.470 Sum_probs=36.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CC-----------------CCEEEEEECCCCCCHHHHHH
Q ss_conf 99952786667337999999999733-89-----------------86899950887588268876
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQI-SN-----------------FKVSLITTDGFLFPNAVLTA 132 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~-~~-----------------~~V~lis~DgF~~~n~~l~~ 132 (311)
.++|.|++||||||+.++|.-++..- +. .++..|++|.++++....+.
T Consensus 31 ~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~N 96 (229)
T cd03254 31 TVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMEN 96 (229)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCCEECCCCHHHH
T ss_conf 999999999809999999966866787389999999541899999632899903898757459998
No 89
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=97.31 E-value=0.0023 Score=42.53 Aligned_cols=34 Identities=24% Similarity=0.359 Sum_probs=26.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 99952786667337999999999733898689995
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLIT 119 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis 119 (311)
+|.|-|.-||||||.++.|..-|...+ .+|.++.
T Consensus 2 ~IviEG~dGsGKsT~~~~L~~~L~~~g-~~v~~~~ 35 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARG-YEVVLTR 35 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-CCEEEEE
T ss_conf 899989989999999999999999779-9389986
No 90
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=97.29 E-value=0.00013 Score=51.05 Aligned_cols=48 Identities=23% Similarity=0.407 Sum_probs=35.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-C-----------------CCCEEEEEECCCCCCHHHHHH
Q ss_conf 99952786667337999999999733-8-----------------986899950887588268876
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQI-S-----------------NFKVSLITTDGFLFPNAVLTA 132 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~-~-----------------~~~V~lis~DgF~~~n~~l~~ 132 (311)
.|||.|++||||||++++|..++..- + ...+..|++|.|+++....+.
T Consensus 31 ~iaIvG~sGsGKSTLl~ll~gl~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eN 96 (238)
T cd03249 31 TVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAEN 96 (238)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCCEECCCCHHHH
T ss_conf 999999999989999999823861885189999999231899999740699915896727529999
No 91
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.26 E-value=0.00023 Score=49.31 Aligned_cols=70 Identities=21% Similarity=0.294 Sum_probs=44.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CC-----------------CCEEEEEECCCCCCHHHHHHHCHHHCCCCHHHHH
Q ss_conf 99952786667337999999999733-89-----------------8689995088758826887600020189813312
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQI-SN-----------------FKVSLITTDGFLFPNAVLTANNLMQRKGFPESYD 146 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~-~~-----------------~~V~lis~DgF~~~n~~l~~~~l~~rkGfPeS~D 146 (311)
.+||.|+|||||||++++|..++.-- +. ..+..|++|.|+++....+.- +.|-|++=|
T Consensus 369 ~vaiVG~SGsGKSTL~~LL~r~ydp~~G~I~idG~di~~~~~~~lr~~i~~V~Q~~~LF~~TI~eNi----~~g~~~atd 444 (575)
T PRK11160 369 KVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIASYSEAALRQAISVVSQRVHLFSGTLRDNL----LLAAPNATD 444 (575)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHHCCCCCCCCCCCCCHHHHH----HHCCCCCCH
T ss_conf 8999889997599999998623678998899998975638889998761356777602588678998----725898789
Q ss_pred HHHHHHHHHHHHC
Q ss_conf 8999999997412
Q gi|254780827|r 147 SNKLLTFLSDVKS 159 (311)
Q Consensus 147 ~~~L~~~L~~lK~ 159 (311)
-+ +.+-+.+...
T Consensus 445 ee-~~~al~~a~l 456 (575)
T PRK11160 445 EA-LIEVLQQVGL 456 (575)
T ss_pred HH-HHHHHHHHCC
T ss_conf 99-9999975370
No 92
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.25 E-value=0.00035 Score=48.11 Aligned_cols=48 Identities=19% Similarity=0.317 Sum_probs=37.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-----CCCCEEEEEECCCCCCHHHHHH
Q ss_conf 99952786667337999999999733-----8986899950887588268876
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQI-----SNFKVSLITTDGFLFPNAVLTA 132 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~-----~~~~V~lis~DgF~~~n~~l~~ 132 (311)
++||.|++||||||+.+.+.-++... -+.++..++++.|+++....+.
T Consensus 33 ~~~IvG~sGsGKSTLl~~i~G~~~~~~G~I~~~g~i~~v~Q~~~l~~~Tv~eN 85 (204)
T cd03250 33 LVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNGTIREN 85 (204)
T ss_pred EEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHH
T ss_conf 99999999985899999981895256895225898899958775677509999
No 93
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.23 E-value=0.00048 Score=47.21 Aligned_cols=43 Identities=28% Similarity=0.297 Sum_probs=33.4
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 78767999527866673379999999997338986899950887
Q gi|254780827|r 80 SKIPFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGF 123 (311)
Q Consensus 80 ~k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF 123 (311)
.+.||+|=++|-|||||||+|+.|...|...+ .+|.++-.|.+
T Consensus 4 ~~kg~viW~TGLsGSGKTTiA~~l~~~L~~~g-~~~~~LDGD~l 46 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKY-SNVIYLDGDEL 46 (176)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC-CCEEEECCHHH
T ss_conf 88867999789999989999999999999759-97799886899
No 94
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=97.23 E-value=0.0011 Score=44.82 Aligned_cols=80 Identities=19% Similarity=0.158 Sum_probs=44.5
Q ss_pred HHHCCCC-CCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 8744888-4689999999-8999999999999999989999987167766787679995278666733799999999973
Q gi|254780827|r 32 QLLSFDS-PIDSTEIYKI-YFPLSHLLLINVNSAKITCHQYNKFLNLKEESKIPFVVGITGSVAVGKSTFARILCILLQQ 109 (311)
Q Consensus 32 ~l~~~~d-~i~~~ev~~i-y~pl~~ll~~~~~~~~~~~~~~~~fl~~~~~~k~PfIIGIAG~~asGKST~Ar~L~~lL~~ 109 (311)
.|+.=|. .|+-+|+.++ |--| +.-+.... ..+-.|+..--..+.|.||-|.|.+|+||||+|-.|. .+
T Consensus 216 ~L~~~~~~~i~~~elr~~v~~~L---~~~~~~~~----A~rY~lwR~ir~~~~PiiILIGGaSGvGKSTlAseLA---~R 285 (492)
T PRK12337 216 DLRGSGDRVVRRDEIREKVEALL---RDEVGPDV----SARYRLLRVLRKPPRPLHVLLGGVSGTGKSVLAAELA---YR 285 (492)
T ss_pred HHHHCCCEEEEHHHHHHHHHHHH---HHHCCHHH----HHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHH---HH
T ss_conf 99865887970999999999999---87303889----9999999997356887699960788866888999999---96
Q ss_pred CCCCCEEEEEECCC
Q ss_conf 38986899950887
Q gi|254780827|r 110 ISNFKVSLITTDGF 123 (311)
Q Consensus 110 ~~~~~V~lis~DgF 123 (311)
.+- ..+|+||.-
T Consensus 286 LGI--~~VIsTDsI 297 (492)
T PRK12337 286 LGI--TRVVPTDAI 297 (492)
T ss_pred HCC--CCCCCCHHH
T ss_conf 098--810254479
No 95
>KOG3220 consensus
Probab=97.21 E-value=0.00024 Score=49.25 Aligned_cols=23 Identities=43% Similarity=0.806 Sum_probs=20.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 79995278666733799999999
Q gi|254780827|r 84 FVVGITGSVAVGKSTFARILCIL 106 (311)
Q Consensus 84 fIIGIAG~~asGKST~Ar~L~~l 106 (311)
||+|++||.||||||+++.++++
T Consensus 2 ~iVGLTGgiatGKStVs~~f~~~ 24 (225)
T KOG3220 2 LIVGLTGGIATGKSTVSQVFKAL 24 (225)
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 69994056566737999999974
No 96
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.20 E-value=0.00079 Score=45.72 Aligned_cols=42 Identities=33% Similarity=0.512 Sum_probs=30.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE---CCCCCC
Q ss_conf 67999527866673379999999997338986899950---887588
Q gi|254780827|r 83 PFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITT---DGFLFP 126 (311)
Q Consensus 83 PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~---DgF~~~ 126 (311)
|. |=.+|.+||||||+|+.|..+|++- ...|..++- ++|+.+
T Consensus 2 pL-iIlTGyPgsGKTtfakeLak~L~~~-i~~vi~l~kdy~~~i~~D 46 (261)
T COG4088 2 PL-IILTGYPGSGKTTFAKELAKELRQE-IWRVIHLEKDYLRGILWD 46 (261)
T ss_pred CE-EEEECCCCCCCHHHHHHHHHHHHHH-HHHCCCCCHHHHHHEECC
T ss_conf 56-9982699988017899999999972-001121320145412331
No 97
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.18 E-value=0.00026 Score=48.97 Aligned_cols=48 Identities=27% Similarity=0.379 Sum_probs=35.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC------------------CCCEEEEEECCCCCCHHHHHH
Q ss_conf 999527866673379999999997338------------------986899950887588268876
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQIS------------------NFKVSLITTDGFLFPNAVLTA 132 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~------------------~~~V~lis~DgF~~~n~~l~~ 132 (311)
.+||.|++||||||+.++|..++.... ..+|..|++|.++++....+.
T Consensus 29 ~v~ivG~sGsGKSTLl~ll~gl~~p~~G~I~idg~di~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eN 94 (236)
T cd03253 29 KVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYN 94 (236)
T ss_pred EEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCEECCCCCHHHHHHCEEEEECCCEEECCCHHHH
T ss_conf 999999999989999999743854887489999999231899999723789950780116758998
No 98
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.18 E-value=0.00034 Score=48.18 Aligned_cols=47 Identities=19% Similarity=0.358 Sum_probs=36.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-C----CCCEEEEEECCCCCCHHHHH
Q ss_conf 99952786667337999999999733-8----98689995088758826887
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQI-S----NFKVSLITTDGFLFPNAVLT 131 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~-~----~~~V~lis~DgF~~~n~~l~ 131 (311)
.+||.|++||||||+.++|..++..- + +.++..+++|.++++....+
T Consensus 65 ~vaIVG~sGSGKSTLl~lL~gl~~p~~G~I~~~g~i~~v~Q~~~lf~~Tire 116 (282)
T cd03291 65 MLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMPGTIKE 116 (282)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEEEECCCCCCCCCCHHH
T ss_conf 9999999998199999999578727865899999999865744226710999
No 99
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB; InterPro: IPR014149 This entry represents TrbB, a protein, which is encoded in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer . TrbB is a homologue of the vir system VirB11 ATPase , and the Flp pilus system ATPase TadA ..
Probab=97.16 E-value=0.00054 Score=46.84 Aligned_cols=118 Identities=17% Similarity=0.193 Sum_probs=61.8
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHH-HHHHHH
Q ss_conf 8744888468999999989999999--9999999998999998716776678767999527866673379999-999997
Q gi|254780827|r 32 QLLSFDSPIDSTEIYKIYFPLSHLL--LINVNSAKITCHQYNKFLNLKEESKIPFVVGITGSVAVGKSTFARI-LCILLQ 108 (311)
Q Consensus 32 ~l~~~~d~i~~~ev~~iy~pl~~ll--~~~~~~~~~~~~~~~~fl~~~~~~k~PfIIGIAG~~asGKST~Ar~-L~~lL~ 108 (311)
+..|+-+|+--+=+-.|=.|=+++. .=||++. -+.+...+.|..--.+|+ =|=|+||+||||||+|.. |.++-.
T Consensus 89 RFeGl~PPVV~~p~F~IRkkA~~vfTLDdYV~~g-imtaaQ~d~l~~Av~ar~--NIlv~GGTGSGKTTLaNAlla~I~~ 165 (315)
T TIGR02782 89 RFEGLLPPVVEAPSFAIRKKAVRVFTLDDYVEAG-IMTAAQRDVLREAVAARK--NILVVGGTGSGKTTLANALLAEIAK 165 (315)
T ss_pred CCCCCCCCCCCCCCCHHCCCCCCCCCCHHHHHHC-CCCHHHHHHHHHHHHHCC--CEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 1004687755655101110224104707776404-455789999999997129--8899814588579999999998852
Q ss_pred -HCCCCCEEEEEECCCCCCHHHHH--HHCHHHCCCCHHH-HHHHHHHHHHHHHH
Q ss_conf -33898689995088758826887--6000201898133-12899999999741
Q gi|254780827|r 109 -QISNFKVSLITTDGFLFPNAVLT--ANNLMQRKGFPES-YDSNKLLTFLSDVK 158 (311)
Q Consensus 109 -~~~~~~V~lis~DgF~~~n~~l~--~~~l~~rkGfPeS-~D~~~L~~~L~~lK 158 (311)
..|+.+|.+|- +.+|++ .++...-+-.++. .||..|++-=.+++
T Consensus 166 l~~P~dR~vIiE------DT~ElQC~A~N~V~lrT~d~~Gi~M~~LLk~TLRlR 213 (315)
T TIGR02782 166 LNDPDDRVVIIE------DTAELQCAAENLVALRTSDDVGISMTRLLKATLRLR 213 (315)
T ss_pred CCCCCCEEEEEE------CCHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCC
T ss_conf 169996189985------471320137870687448986614788888750058
No 100
>KOG3354 consensus
Probab=97.15 E-value=0.0024 Score=42.45 Aligned_cols=81 Identities=21% Similarity=0.266 Sum_probs=46.8
Q ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC-HHHHHHHCHHHC-C-CCHHHHHHHHHHHH
Q ss_conf 76678767999527866673379999999997338986899950887588-268876000201-8-98133128999999
Q gi|254780827|r 77 KEESKIPFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFP-NAVLTANNLMQR-K-GFPESYDSNKLLTF 153 (311)
Q Consensus 77 ~~~~k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~-n~~l~~~~l~~r-k-GfPeS~D~~~L~~~ 153 (311)
++..+.||+|-|.|.+|+||||+++.|..-|+ ...+--|+||-| |.+--.+|+--+ - --|+-.... ...
T Consensus 6 ~t~~~~k~~i~vmGvsGsGKSTigk~L~~~l~------~~F~dgDd~Hp~~NveKM~~GipLnD~DR~pWL~~i~--~~~ 77 (191)
T KOG3354 6 KTMGPFKYVIVVMGVSGSGKSTIGKALSEELG------LKFIDGDDLHPPANVEKMTQGIPLNDDDRWPWLKKIA--VEL 77 (191)
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHC------CCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHH--HHH
T ss_conf 56677760599983588774459999999858------8624555579878899883699888532117999999--999
Q ss_pred HHHHHCCCCEEE
Q ss_conf 997412664058
Q gi|254780827|r 154 LSDVKSGKKKVA 165 (311)
Q Consensus 154 L~~lK~G~~~V~ 165 (311)
..++-+|+..|-
T Consensus 78 ~~~l~~~q~vVl 89 (191)
T KOG3354 78 RKALASGQGVVL 89 (191)
T ss_pred HHHHHCCCEEEE
T ss_conf 987632781899
No 101
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.15 E-value=0.00097 Score=45.13 Aligned_cols=69 Identities=22% Similarity=0.307 Sum_probs=42.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC------------------CCCEEEEEECCCCCCHHHHHHHCHHHCCCCHHHHH
Q ss_conf 999527866673379999999997338------------------98689995088758826887600020189813312
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQIS------------------NFKVSLITTDGFLFPNAVLTANNLMQRKGFPESYD 146 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~------------------~~~V~lis~DgF~~~n~~l~~~~l~~rkGfPeS~D 146 (311)
.|||.|.+||||||+.++|..++..-. ..++..|+++.+++.....+.-. .|.|+ .+
T Consensus 30 ~i~IvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNI~----~g~~~-~~ 104 (234)
T cd03251 30 TVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIA----YGRPG-AT 104 (234)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCCEECCCCHHHHHH----CCCCC-CC
T ss_conf 99999899982999999996676678868999999966089999973179993689471645999961----47989-99
Q ss_pred HHHHHHHHHHHH
Q ss_conf 899999999741
Q gi|254780827|r 147 SNKLLTFLSDVK 158 (311)
Q Consensus 147 ~~~L~~~L~~lK 158 (311)
.+.+.+.+....
T Consensus 105 ~~~i~~~l~~~~ 116 (234)
T cd03251 105 REEVEEAARAAN 116 (234)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999863
No 102
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.12 E-value=0.0014 Score=43.98 Aligned_cols=48 Identities=21% Similarity=0.313 Sum_probs=33.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC----------------------CCEEEEEECCCCCCHHHHHH
Q ss_conf 9995278666733799999999973389----------------------86899950887588268876
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISN----------------------FKVSLITTDGFLFPNAVLTA 132 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~----------------------~~V~lis~DgF~~~n~~l~~ 132 (311)
++||.|++||||||+.+.|.-++....+ ..+..+++|.++++....+.
T Consensus 29 ~~~IvG~sGsGKSTLl~~l~g~~~~~~G~I~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eN 98 (218)
T cd03290 29 LTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEEN 98 (218)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHHCCEEEEEECCCCCCCCCHHHH
T ss_conf 9999999998099999998555656776499898666864677788875653899815665678899998
No 103
>TIGR00455 apsK adenylylsulfate kinase; InterPro: IPR002891 Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulphate. This domain contains an ATP binding P-loop motif .; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity transferring phosphorus-containing groups, 0000103 sulfate assimilation.
Probab=97.12 E-value=0.00075 Score=45.88 Aligned_cols=52 Identities=29% Similarity=0.382 Sum_probs=36.7
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCHHHCCCC
Q ss_conf 8767999527866673379999999997338986899950887588268876000201898
Q gi|254780827|r 81 KIPFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTANNLMQRKGF 141 (311)
Q Consensus 81 k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~~~l~~rkGf 141 (311)
..=+||=++|-|||||||+|..|.+.|.+-+ -++.++=-|+= ++||-..-||
T Consensus 17 h~g~vlWlTGLSGsGKsTiA~Al~~~L~~~G-~~~~~LDGDnv--------R~gL~~dLGF 68 (187)
T TIGR00455 17 HRGVVLWLTGLSGSGKSTIANALEKKLEKKG-YRVYVLDGDNV--------RHGLNKDLGF 68 (187)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHCC-CEEEEECCCEE--------ECCCCCCCCC
T ss_conf 9738985116885635799999999999669-74999758634--------2477888888
No 104
>TIGR01425 SRP54_euk signal recognition particle protein SRP54; InterPro: IPR006325 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.; GO: 0005525 GTP binding, 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=97.12 E-value=0.00074 Score=45.92 Aligned_cols=221 Identities=19% Similarity=0.263 Sum_probs=130.0
Q ss_pred HHH-CCCCCCCCHHHHHHHHCCCCCCCHHHHH-----------HHHHHHHHHHHHHHHH--HHHHHHHHHHHHCCC--CC
Q ss_conf 731-4799988989999874488846899999-----------9989999999999999--999899999871677--66
Q gi|254780827|r 16 AVH-SKFSSILSKKISNQLLSFDSPIDSTEIY-----------KIYFPLSHLLLINVNS--AKITCHQYNKFLNLK--EE 79 (311)
Q Consensus 16 ~~~-~~~~~~l~~~~~~~l~~~~d~i~~~ev~-----------~iy~pl~~ll~~~~~~--~~~~~~~~~~fl~~~--~~ 79 (311)
||+ ++..+-|-.+=.++++.--|.|++++.. -|+-=|+.|+.-.+.+ -.+|...+...-|.+ +.
T Consensus 38 ALL~~dvn~klv~~l~~Nik~kid~~n~e~~~~g~nKRk~iq~~vF~EL~~LvDp~~~APkPkklststktinGkk~~p~ 117 (453)
T TIGR01425 38 ALLESDVNVKLVRQLRENIKKKIDKINLEELASGLNKRKLIQKAVFEELCNLVDPGVEAPKPKKLSTSTKTINGKKFTPK 117 (453)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCEEECC
T ss_conf 75113352677898888788740503513321032478999998999989760863234687533321101035034115
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 78767999527866673379999999997338986899950887588268876000201898133128999999997412
Q gi|254780827|r 80 SKIPFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTANNLMQRKGFPESYDSNKLLTFLSDVKS 159 (311)
Q Consensus 80 ~k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~~~l~~rkGfPeS~D~~~L~~~L~~lK~ 159 (311)
+-.|-||--.|=+||||||+|-.|..=.++ .+.++.||+-|-| + -| +|| +||.
T Consensus 118 Kgk~~ViMfVGLQGaGKTTtctKLA~YYk~-rGfK~~lvCADTF-R-------------AG---AFd---------QLkq 170 (453)
T TIGR01425 118 KGKSSVIMFVGLQGAGKTTTCTKLAYYYKR-RGFKPALVCADTF-R-------------AG---AFD---------QLKQ 170 (453)
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHC-CCCCEEEECCCCC-C-------------CC---HHH---------HHHH
T ss_conf 688215888621488715668787777632-6643256517754-2-------------32---489---------9987
Q ss_pred CCCEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHHHHHHHHHHHH
Q ss_conf 66405874044322565898369986896599706100357654575777401000231157730889998879988788
Q gi|254780827|r 160 GKKKVAVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADKRDIHRWYLNRFL 239 (311)
Q Consensus 160 G~~~V~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~i~~wyi~Rf~ 239 (311)
....-.+|-| |.+...+| =+|=+||+--|-.. -|| -|-||+.-....+--+=.-.
T Consensus 171 NA~kA~iPFY---------Gsy~E~DP-VkiA~EGv~~Fk~E--------------~~d-iIivDTSGRHkQe~~LF~Em 225 (453)
T TIGR01425 171 NATKAKIPFY---------GSYLESDP-VKIASEGVEKFKKE--------------KFD-IIIVDTSGRHKQEEELFEEM 225 (453)
T ss_pred HHHHCCCCCC---------CCCCCCCC-EEEECCCHHHHHCC--------------CCC-EEEEECCCCCHHHHHHHHHH
T ss_conf 4764489712---------01048987-07800201132212--------------784-79983798732258888998
Q ss_pred HHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 876652016777998860599899999999998863166899952013136649997589984
Q gi|254780827|r 240 KLRETAFLNPRSYFHHFTEISEEQSLKIAETAWNNINLPNLQHNILPTRKRADLILSKGEDHS 302 (311)
Q Consensus 240 ~lr~~a~~~~~s~~~~y~~l~~~ea~~~a~~iW~~in~pnl~e~I~PTr~rADlIi~k~~~H~ 302 (311)
..-..| -.|++..+=--+---+.|..-| ..+.+ .-+-+.+||+|=..|.
T Consensus 226 ~qv~~A-i~Pd~iifVMDGsIGQAA~~QA---------kAFK~----~~~vGSvIiTKLDGHA 274 (453)
T TIGR01425 226 VQVAEA-IKPDSIIFVMDGSIGQAAFSQA---------KAFKD----SVEVGSVIITKLDGHA 274 (453)
T ss_pred HHHHHC-CCCCCEEEEECCCHHHHHHHHH---------HHHHH----CCCCEEEEEECCCCCC
T ss_conf 768633-4998369980661667889999---------98630----0350038875156776
No 105
>PRK13973 thymidylate kinase; Provisional
Probab=97.10 E-value=0.0077 Score=39.04 Aligned_cols=134 Identities=20% Similarity=0.250 Sum_probs=68.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCHHHCCCC---HHHH-------HHHHHHH
Q ss_conf 67999527866673379999999997338986899950887588268876000201898---1331-------2899999
Q gi|254780827|r 83 PFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTANNLMQRKGF---PESY-------DSNKLLT 152 (311)
Q Consensus 83 PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~~~l~~rkGf---PeS~-------D~~~L~~ 152 (311)
-..|-|-|.-||||||-++.|..-|..- +.+|.+..-=|- -+..+.-+.-+++.+.- |.+. -.+.+.+
T Consensus 3 G~fIv~EGiDGsGKsTq~~~L~~~L~~~-g~~v~~trePg~-t~~~e~ir~~ll~~~~~~~~~~~e~lLfaA~R~eh~~~ 80 (216)
T PRK13973 3 GRFITFEGGEGAGKSTQIRLLAERLRAA-GYDVLVTREPGG-SPGAEAIRHVLLSGAAELYGPAMEALLFAAARDDHVEE 80 (216)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCC-CCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 2499988999998999999999999977-995799409899-84089999998466657899899999999999999999
Q ss_pred HHH-HHHCCCCEEEEECCCCCC--CCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHH
Q ss_conf 999-741266405874044322--56589836998689659970610035765457577740100023115773088999
Q gi|254780827|r 153 FLS-DVKSGKKKVAVPRYSHSQ--YDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADKRD 229 (311)
Q Consensus 153 ~L~-~lK~G~~~V~~PvYsh~~--~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~ 229 (311)
.+. .|.+|+ .|-.=-|.+.+ |.-..+ ..+.-.++.++-+....+. =|+.||+|+|.+.
T Consensus 81 ~I~paL~~g~-~VI~DRy~~Ss~AYQg~~~------~~~~~~l~~l~~~~~~~~~------------PDlti~LDv~~e~ 141 (216)
T PRK13973 81 VIRPALARGK-IVLCDRFIDSTRAYQGVTG------NVDPALLAALERVAINGVM------------PDLTLILDIPAEV 141 (216)
T ss_pred HHHHHHHCCC-EEEECCCCCHHHHHHHHCC------CCCHHHHHHHHHHHHCCCC------------CCEEEEECCCHHH
T ss_conf 9999997799-8986786257999977427------8898999999999967999------------9989998188899
Q ss_pred HHHHHHHH
Q ss_conf 88799887
Q gi|254780827|r 230 IHRWYLNR 237 (311)
Q Consensus 230 i~~wyi~R 237 (311)
-.+|.-.|
T Consensus 142 a~~R~~~R 149 (216)
T PRK13973 142 GLERAAKR 149 (216)
T ss_pred HHHHHHHH
T ss_conf 99999983
No 106
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.10 E-value=0.00047 Score=47.24 Aligned_cols=27 Identities=37% Similarity=0.546 Sum_probs=23.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 767999527866673379999999997
Q gi|254780827|r 82 IPFVVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 82 ~PfIIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
..++|.|-||+||||||+|+.|..-|.
T Consensus 3 ~~~~IAIDGPagsGKsTvak~lA~~Lg 29 (222)
T COG0283 3 AAIIIAIDGPAGSGKSTVAKILAEKLG 29 (222)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 764999768875684789999999809
No 107
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.09 E-value=0.0011 Score=44.65 Aligned_cols=42 Identities=24% Similarity=0.281 Sum_probs=32.5
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 8767999527866673379999999997338986899950887
Q gi|254780827|r 81 KIPFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGF 123 (311)
Q Consensus 81 k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF 123 (311)
+.+|+|=++|=|||||||+|+.|...|...+ .++.++--|.+
T Consensus 2 ~kg~viWltGlsgSGKTTia~~l~~~L~~~~-~~~~~LDGD~l 43 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTISHALAEKLRARG-YPVEVLDGDIV 43 (175)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCC-CCEEEECCHHH
T ss_conf 9888999889899999999999999999869-96799776888
No 108
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.09 E-value=0.002 Score=43.05 Aligned_cols=73 Identities=19% Similarity=0.231 Sum_probs=41.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC---CC----------------------CCEEEEEECCCCCCHHHHHH--HCHHH
Q ss_conf 99952786667337999999999733---89----------------------86899950887588268876--00020
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQI---SN----------------------FKVSLITTDGFLFPNAVLTA--NNLMQ 137 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~---~~----------------------~~V~lis~DgF~~~n~~l~~--~~l~~ 137 (311)
++||-|++||||||+.+.|..|+... |. .++..|.+|..+++..+.+. .++..
T Consensus 28 ~~~iiG~SGsGKSTll~~i~gL~~~~~~~p~~G~I~~~g~~i~~~~~~~~~~R~~ig~VfQ~~~lf~~TV~eNi~~~l~~ 107 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRL 107 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCEECCCCCCCHHHHHHCCEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 99999999981999999997445026899814699999999988995878896282687647766778099999999998
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q ss_conf 18981331289999999974
Q gi|254780827|r 138 RKGFPESYDSNKLLTFLSDV 157 (311)
Q Consensus 138 rkGfPeS~D~~~L~~~L~~l 157 (311)
+...|..--.+...+.|..+
T Consensus 108 ~~~~~~~~~~~~v~~~L~~v 127 (227)
T cd03260 108 HGIKLKEELDERVEEALRKA 127 (227)
T ss_pred CCCCCHHHHHHHHHHHHHHC
T ss_conf 38999999999999999877
No 109
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.07 E-value=0.001 Score=44.90 Aligned_cols=48 Identities=31% Similarity=0.468 Sum_probs=33.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-C-----------------CCEEEEEECCCCCCHHHHHH
Q ss_conf 999527866673379999999997338-9-----------------86899950887588268876
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQIS-N-----------------FKVSLITTDGFLFPNAVLTA 132 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~-~-----------------~~V~lis~DgF~~~n~~l~~ 132 (311)
++||.|++||||||+.+.|.-++.... . .++..|++|.++++....+.
T Consensus 32 ~v~ivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eN 97 (221)
T cd03244 32 KVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSN 97 (221)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHEEEEECCCCCCCCCHHHH
T ss_conf 999999999989999999967971898489999999661999999740799930352356008875
No 110
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.07 E-value=0.00068 Score=46.17 Aligned_cols=109 Identities=17% Similarity=0.215 Sum_probs=53.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CC-----------------------CCEEEEEECCCCCCHH-HHHH--HCHHH
Q ss_conf 99952786667337999999999733-89-----------------------8689995088758826-8876--00020
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQI-SN-----------------------FKVSLITTDGFLFPNA-VLTA--NNLMQ 137 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~-~~-----------------------~~V~lis~DgF~~~n~-~l~~--~~l~~ 137 (311)
++||.|++||||||+.+.|.-++..- +. .+|..|.++.-++|+. +.+. .+.+.
T Consensus 30 ~~~iiG~nGaGKSTLl~~l~gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~lr~~ig~VfQ~~~l~~~~tv~en~~~~~~~ 109 (242)
T PRK11124 30 TLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRQNVGMVFQQYNLWPHLTVQQNLIEAPCR 109 (242)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEEEECCCCCCHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 99999999971999999996588888608999999963467888779999755808993078668786687888889999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCEEEEEC--CCCCCCCCCCCCEEEECCCCEEEEEC
Q ss_conf 1898133128999999997412664058740--44322565898369986896599706
Q gi|254780827|r 138 RKGFPESYDSNKLLTFLSDVKSGKKKVAVPR--YSHSQYDILEGEYDTIIQPDILLIEG 194 (311)
Q Consensus 138 rkGfPeS~D~~~L~~~L~~lK~G~~~V~~Pv--Ysh~~~D~vp~~~~vi~~pdIIIvEG 194 (311)
..|.+..--.+...+.|..+.-... ...+. .|--.-.|+.=....+..|+|||+.=
T Consensus 110 ~~g~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDE 167 (242)
T PRK11124 110 VLGLSKDQALARAEKLLERLRLKPY-ADRFPLHLSGGQQQRVAIARALMMEPQVLLFDE 167 (242)
T ss_pred HCCCCHHHHHHHHHHHHHHCCCHHH-HHCCCHHCCHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 8499878999999999987697777-638732279999899998764337997999768
No 111
>PRK13768 GTPase; Provisional
Probab=97.07 E-value=0.0013 Score=44.35 Aligned_cols=99 Identities=19% Similarity=0.345 Sum_probs=59.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEC----CCCCC-HHHHH----HHCHHHCCCC-HH---HHHHH
Q ss_conf 7679995278666733799999999973389868999508----87588-26887----6000201898-13---31289
Q gi|254780827|r 82 IPFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTD----GFLFP-NAVLT----ANNLMQRKGF-PE---SYDSN 148 (311)
Q Consensus 82 ~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~D----gF~~~-n~~l~----~~~l~~rkGf-Pe---S~D~~ 148 (311)
.||.+=|.|+.||||||+++.++..++.. +.+|.+|-.| .+-|+ +-... -+..|...|. |. -|=++
T Consensus 1 M~~~~~ViGpaGSGKsT~~~~l~~~l~~~-~r~~~vvNLDPA~e~~pY~~~iDIRd~i~~~dVM~~~~LGPNGali~~~e 79 (253)
T PRK13768 1 MMYIVFFLGTAGSGKTTLVGALSDWLEEQ-GYDVAIVNLDPAVEYLPYKPDIDVREYVSAREIMRKYGLGPNGALIASVD 79 (253)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCCCCCCCCCHHHHCCHHHHHHHHCCCCCHHHHHHHH
T ss_conf 97189998999998899999999999976-99759997898665899998863786178999998819896468999999
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEC
Q ss_conf 9999999741266405874044322565898369986
Q gi|254780827|r 149 KLLTFLSDVKSGKKKVAVPRYSHSQYDILEGEYDTII 185 (311)
Q Consensus 149 ~L~~~L~~lK~G~~~V~~PvYsh~~~D~vp~~~~vi~ 185 (311)
.|...+..++..-... .-++..-| +||+.....
T Consensus 80 ~l~~~~d~l~~~i~~~---~~dY~i~D-~PGQiElft 112 (253)
T PRK13768 80 LLLTKAEEIKEEIERL---DADYVLVD-TPGQMELFA 112 (253)
T ss_pred HHHHHHHHHHHHHHHC---CCCEEEEE-CCCCEEEEE
T ss_conf 9999899999998515---88759982-687443222
No 112
>PRK10744 phosphate transporter subunit; Provisional
Probab=97.07 E-value=0.004 Score=40.94 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 9995278666733799999999973
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQ 109 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~ 109 (311)
++||.|++||||||+.+.|..++.-
T Consensus 38 ~~~liG~nGaGKSTLlk~i~gl~~l 62 (257)
T PRK10744 38 VTAFIGPSGCGKSTLLRTFNKMYEL 62 (257)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9999999998199999999876512
No 113
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=97.06 E-value=0.00048 Score=47.21 Aligned_cols=48 Identities=25% Similarity=0.433 Sum_probs=33.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-C-----------------CCCEEEEEECCCCCCHHHHHH
Q ss_conf 99952786667337999999999733-8-----------------986899950887588268876
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQI-S-----------------NFKVSLITTDGFLFPNAVLTA 132 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~-~-----------------~~~V~lis~DgF~~~n~~l~~ 132 (311)
++||.|++||||||+.++|..++..- + ...+..|++|.+++.....+.
T Consensus 30 ~vaivG~sGsGKSTll~ll~gl~~p~~G~I~i~g~di~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eN 95 (237)
T cd03252 30 VVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDN 95 (237)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHCEEEECCCCCCCCCHHHH
T ss_conf 999999999859999999967765798789999999551899999860189958771557828988
No 114
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.06 E-value=0.0012 Score=44.49 Aligned_cols=42 Identities=29% Similarity=0.294 Sum_probs=32.5
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 8767999527866673379999999997338986899950887
Q gi|254780827|r 81 KIPFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGF 123 (311)
Q Consensus 81 k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF 123 (311)
+.|+||=++|-|||||||+|+.|...|...+ .++.++-.|.+
T Consensus 22 ~kg~viWlTGLSGSGKTTlA~~L~~~L~~~~-~~~~~LDGD~l 63 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELG-VHTYLLDGDNV 63 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCC-CCEEEECHHHH
T ss_conf 9986999879999988999999999999759-97599777999
No 115
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.03 E-value=0.00089 Score=45.39 Aligned_cols=48 Identities=25% Similarity=0.364 Sum_probs=33.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC-----------------CCEEEEEECCCCCCHHHHHH
Q ss_conf 9995278666733799999999973389-----------------86899950887588268876
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISN-----------------FKVSLITTDGFLFPNAVLTA 132 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~-----------------~~V~lis~DgF~~~n~~l~~ 132 (311)
++||.|++||||||+.+.|..++..-+. ..+..|++|.|+++....+.
T Consensus 32 ~vaIvG~sGsGKSTLl~lL~gl~~~~G~I~idg~~i~~~~~~~~r~~i~~vpQ~~~lf~~Ti~eN 96 (275)
T cd03289 32 RVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKN 96 (275)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCEEEECCEECCCCCHHHHHHHEEEECCCCCCCCCCHHHH
T ss_conf 99999999997999999996035789539999880673689999763899665563267419997
No 116
>TIGR00017 cmk cytidylate kinase; InterPro: IPR003136 This family consists of cytidylate kinase (2.7.4.14 from EC), which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors .; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=97.02 E-value=0.00041 Score=47.69 Aligned_cols=135 Identities=17% Similarity=0.283 Sum_probs=69.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHH----
Q ss_conf 6799952786667337999999999733898689995088758826887600020189813312899999999741----
Q gi|254780827|r 83 PFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTANNLMQRKGFPESYDSNKLLTFLSDVK---- 158 (311)
Q Consensus 83 PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~~~l~~rkGfPeS~D~~~L~~~L~~lK---- 158 (311)
-++|.|=||+||||||+|+.+..-|. =..+++=--|.--+..-.+.++++-++ -|=+.|++.+..+-
T Consensus 2 ~~~IAIDGPs~aGKStvak~~A~~L~------y~yldsG~mYR~~a~~~qrsL~~~~d~---~~E~~L~~L~~~~di~f~ 72 (223)
T TIGR00017 2 KMIIAIDGPSGAGKSTVAKAVAEKLG------YKYLDSGAMYRALALAAQRSLQNRVDL---TDEDALLELISQLDIRFI 72 (223)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC------CEEECCCHHHHHHHHHHHHHHHCCCCC---CCHHHHHHHHHHCCCEEE
T ss_conf 86376237764655789999998629------502144328999999999887406885---684889999863260442
Q ss_pred C--CCCEEE-------EECCCCCCCC---------CCC----CCEEEECCC--CEEEEECCHHCCCCCCCCCCCCCEEEC
Q ss_conf 2--664058-------7404432256---------589----836998689--659970610035765457577740100
Q gi|254780827|r 159 S--GKKKVA-------VPRYSHSQYD---------ILE----GEYDTIIQP--DILLIEGINVLQQNSLSDNQKATPMIS 214 (311)
Q Consensus 159 ~--G~~~V~-------~PvYsh~~~D---------~vp----~~~~vi~~p--dIIIvEGi~vL~~~~l~~~~~~~~~vs 214 (311)
. |...|. --+-.-...+ .+- ...+.+... +=+|.||= | ....|-
T Consensus 73 ~~~~~~~v~~nG~DV~~~I~t~~v~~~aS~~A~~~~vR~~~~~~Qq~~~~~sd~g~v~dGR----------D--iGTvVf 140 (223)
T TIGR00017 73 PTAGEVKVFLNGEDVSEAIRTQEVANLASKVAAFPKVREILLKRQQKLAKNSDDGIVADGR----------D--IGTVVF 140 (223)
T ss_pred CCCCCEEEEECCCCHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEECC----------C--CCCEEC
T ss_conf 1577506887077713220683589999987237779999999999987515897588455----------2--374467
Q ss_pred CCCCEEEEEECCHHHHHHHHHHHH
Q ss_conf 023115773088999887998878
Q gi|254780827|r 215 DFLDFSIYIDADKRDIHRWYLNRF 238 (311)
Q Consensus 215 D~fD~sIyVDad~~~i~~wyi~Rf 238 (311)
.==.+|||+||..+++-+|+.+-+
T Consensus 141 PnA~~KiFLdAsve~RA~RR~~~~ 164 (223)
T TIGR00017 141 PNAELKIFLDASVEERAKRRYKDL 164 (223)
T ss_pred CCCCCCEEECCCHHHHHHHHHHHH
T ss_conf 887513243178789988769998
No 117
>TIGR00958 3a01208 antigen peptide transporter 2; InterPro: IPR005293 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Proteins of this family are involved in the transport of antigens from the cytoplasm to a membrane-bound compartment for association with MHC class I molecules.; GO: 0005215 transporter activity, 0006810 transport.
Probab=97.01 E-value=0.00085 Score=45.51 Aligned_cols=35 Identities=37% Similarity=0.465 Sum_probs=26.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 999527866673379999999997338986899950887
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGF 123 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF 123 (311)
++++-||+||||||+|- ||.++..|+---|..||=
T Consensus 561 vvALVGPsGsGKStvaa----LL~n~Y~Pt~G~vLlDg~ 595 (770)
T TIGR00958 561 VVALVGPSGSGKSTVAA----LLQNLYQPTGGQVLLDGV 595 (770)
T ss_pred EEEEECCCCCCHHHHHH----HHHHCCCCCCCEEEECCC
T ss_conf 59986589983999999----998557898656877684
No 118
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.00 E-value=0.0012 Score=44.41 Aligned_cols=75 Identities=20% Similarity=0.309 Sum_probs=45.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-C-----------------CCCEEEEEECCCCCCHHHHHHHCHHHCCCC-----
Q ss_conf 99952786667337999999999733-8-----------------986899950887588268876000201898-----
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQI-S-----------------NFKVSLITTDGFLFPNAVLTANNLMQRKGF----- 141 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~-~-----------------~~~V~lis~DgF~~~n~~l~~~~l~~rkGf----- 141 (311)
.|||.|++||||||+++.|..++... + ..++..|++|.++++....+.-. .....
T Consensus 49 ~vaIvG~sGsGKSTL~~ll~gl~~p~~G~I~idg~di~~~~~~~lr~~i~~v~Q~~~lf~~Ti~~Ni~--~~~~~~~~~i 126 (257)
T cd03288 49 KVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLD--PECKCTDDRL 126 (257)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEHHHCCHHHHHHHEEEEECCCCCCCCHHHHCCC--CCCCCCHHHH
T ss_conf 99999999981999999996056678888999989968799999975057994567343613554137--5667689999
Q ss_pred HHHHHHHHHHHHHHHHHCCC
Q ss_conf 13312899999999741266
Q gi|254780827|r 142 PESYDSNKLLTFLSDVKSGK 161 (311)
Q Consensus 142 PeS~D~~~L~~~L~~lK~G~ 161 (311)
-++.+...|.+++..+..|-
T Consensus 127 ~~al~~~~l~~~i~~lp~gl 146 (257)
T cd03288 127 WEALEIAQLKNMVKSLPGGL 146 (257)
T ss_pred HHHHHHHHHHHHHHHCCCCC
T ss_conf 99999962379997375898
No 119
>pfam07693 KAP_NTPase KAP family P-loop domain. The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side.
Probab=97.00 E-value=0.0031 Score=41.68 Aligned_cols=57 Identities=25% Similarity=0.407 Sum_probs=42.2
Q ss_pred HHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCH
Q ss_conf 99987167766787679995278666733799999999973389868999508875882
Q gi|254780827|r 69 QYNKFLNLKEESKIPFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPN 127 (311)
Q Consensus 69 ~~~~fl~~~~~~k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n 127 (311)
..++.+- ......|++|||-|+=||||||+-+.++..|+... ..+.+|.-|.+.|..
T Consensus 7 ~la~~i~-~~~~~~~~vIgl~G~WGsGKTs~l~~~~~~L~~~~-~~~~~v~fn~W~~~~ 63 (301)
T pfam07693 7 NLAKLLV-EPSLAPGFVIGLYGAWGSGKTSFLNLLEDELKEFP-EEFHIVYFDPWLFSG 63 (301)
T ss_pred HHHHHHH-CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC-CCCEEEEEECCCCCC
T ss_conf 9999995-77789997999989899999999999999986136-882699981230479
No 120
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=96.99 E-value=0.0011 Score=44.89 Aligned_cols=106 Identities=22% Similarity=0.378 Sum_probs=53.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC-CC-----------------CCEEEEEECCCCCCHHHHHHHCHHHCCCCHHHH
Q ss_conf 799952786667337999999999733-89-----------------868999508875882688760002018981331
Q gi|254780827|r 84 FVVGITGSVAVGKSTFARILCILLQQI-SN-----------------FKVSLITTDGFLFPNAVLTANNLMQRKGFPESY 145 (311)
Q Consensus 84 fIIGIAG~~asGKST~Ar~L~~lL~~~-~~-----------------~~V~lis~DgF~~~n~~l~~~~l~~rkGfPeS~ 145 (311)
=.+||.|++||||||+++.|..++..- +. .++..|++|.|++.....+. + +.|-|++=
T Consensus 356 e~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~i~~V~Qd~~LF~~TI~~N--I--~~g~~~at 431 (567)
T COG1132 356 EKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIREN--I--ALGRPDAT 431 (567)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECCEEHHHCCHHHHHHHEEEECCCCHHHHHHHHHH--H--HCCCCCCC
T ss_conf 8788855888857899999986158888369899997775385678878235466427777669999--7--45788999
Q ss_pred HHHHHHHHHHHHHCCCCEEEEE-CCCCCCCCC---CC-CCEE-------EECCCCEEEEEC
Q ss_conf 2899999999741266405874-044322565---89-8369-------986896599706
Q gi|254780827|r 146 DSNKLLTFLSDVKSGKKKVAVP-RYSHSQYDI---LE-GEYD-------TIIQPDILLIEG 194 (311)
Q Consensus 146 D~~~L~~~L~~lK~G~~~V~~P-vYsh~~~D~---vp-~~~~-------vi~~pdIIIvEG 194 (311)
| +.+.+-++.......--..| -|+....++ .. |+.| ....|+|+|+.-
T Consensus 432 ~-eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQriaiARall~~~~iLILDE 491 (567)
T COG1132 432 D-EEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDE 491 (567)
T ss_pred H-HHHHHHHHHHCCHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEECC
T ss_conf 9-99999999948637898476667836057887188999999999999703698688723
No 121
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.97 E-value=0.0021 Score=42.92 Aligned_cols=103 Identities=24% Similarity=0.369 Sum_probs=59.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-------------CCCCEEEEEECCCCCCH-HHHHH--HCHHHCCCCHHHHHHH
Q ss_conf 99952786667337999999999733-------------89868999508875882-68876--0002018981331289
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQI-------------SNFKVSLITTDGFLFPN-AVLTA--NNLMQRKGFPESYDSN 148 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~-------------~~~~V~lis~DgF~~~n-~~l~~--~~l~~rkGfPeS~D~~ 148 (311)
++||.|++||||||+.+.+.-++..- ..+++..|.+|..++|. .+.+. .++ ..+|.|..-..+
T Consensus 32 ~~~iiGpsGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~ig~vfQ~~~L~p~~tv~eni~~~l-~~~~~~~~~~~~ 110 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVALGL-ELQGVPKAEARE 110 (220)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCEEEEECCCCCCCCCCHHHHHHHHH-HHCCCCHHHHHH
T ss_conf 9999999995799999999759998873899999967888988799924885377887999998899-865999899999
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEE-------EECCCCEEEEEC
Q ss_conf 9999999741266405874044322565898369-------986896599706
Q gi|254780827|r 149 KLLTFLSDVKSGKKKVAVPRYSHSQYDILEGEYD-------TIIQPDILLIEG 194 (311)
Q Consensus 149 ~L~~~L~~lK~G~~~V~~PvYsh~~~D~vp~~~~-------vi~~pdIIIvEG 194 (311)
...+.|..+.-.. . .-.|-+ .-.-|+.+ .+..|++|+..=
T Consensus 111 ~v~~~l~~~gL~~--~-~~~~p~---~LSGGqkQRvaiARaL~~~P~llllDE 157 (220)
T cd03293 111 RAEELLELVGLSG--F-ENAYPH---QLSGGMRQRVALARALAVDPDVLLLDE 157 (220)
T ss_pred HHHHHHHHCCCHH--H-HHCCHH---HCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 9999999878954--7-618931---299999999999999866999999808
No 122
>PRK02496 adk adenylate kinase; Provisional
Probab=96.96 E-value=0.0061 Score=39.71 Aligned_cols=157 Identities=17% Similarity=0.213 Sum_probs=77.1
Q ss_pred EECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCH----HHH--HHHCHHHCCC--CHHHHHHHHHHHHHHHHHC
Q ss_conf 5278666733799999999973389868999508875882----688--7600020189--8133128999999997412
Q gi|254780827|r 88 ITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPN----AVL--TANNLMQRKG--FPESYDSNKLLTFLSDVKS 159 (311)
Q Consensus 88 IAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n----~~l--~~~~l~~rkG--fPeS~D~~~L~~~L~~lK~ 159 (311)
+-|++||||+|.|+.|..-+ .+..||+-+.+... +++ ..+..+++ | .|+..=.+++.+.|....
T Consensus 6 llG~PGSGKgTqa~~L~~~~------~~~his~GdllR~~~~~~s~lg~~i~~~i~~-G~lvpd~iv~~li~~~l~~~~- 77 (185)
T PRK02496 6 FLGPPGAGKGTQAVVLAEHL------QIPHISTGDILRQAITEQTPLGIKAQGYVDS-GELVPDQLVLGLVQERLQQPD- 77 (185)
T ss_pred EECCCCCCHHHHHHHHHHHH------CCEEECHHHHHHHHHHCCCHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHCCC-
T ss_conf 97999999899999999996------9977888899999987499889999999987-996772889999999984845-
Q ss_pred CCCEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCC-CEE---ECCCCCEEEEEECCHHHHHHHHH
Q ss_conf 66405874044322565898369986896599706100357654575777-401---00023115773088999887998
Q gi|254780827|r 160 GKKKVAVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKA-TPM---ISDFLDFSIYIDADKRDIHRWYL 235 (311)
Q Consensus 160 G~~~V~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~-~~~---vsD~fD~sIyVDad~~~i~~wyi 235 (311)
...=.|++|. |+...+... ... ...-.|+-|+++++++.+.+|..
T Consensus 78 --------------------------~~~g~ilDGf-----PR~~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~ 126 (185)
T PRK02496 78 --------------------------AANGWILDGF-----PRNVTQAAFLDELLQEINQSGDRVVNLDVPDDVIVERLL 126 (185)
T ss_pred --------------------------CCCCEEEECC-----CCCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHH
T ss_conf --------------------------3387788689-----885788999999999705673033330499999999987
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEE
Q ss_conf 87888766520167779988605998999999999988631668999520131366499975899846489
Q gi|254780827|r 236 NRFLKLRETAFLNPRSYFHHFTEISEEQSLKIAETAWNNINLPNLQHNILPTRKRADLILSKGEDHSVKTI 306 (311)
Q Consensus 236 ~Rf~~lr~~a~~~~~s~~~~y~~l~~~ea~~~a~~iW~~in~pnl~e~I~PTr~rADlIi~k~~~H~v~~i 306 (311)
.| +++- +.++++..-...|.+...|-.+-|- + ...++.-+++-.++.|
T Consensus 127 ~R-----~R~D-------------D~~e~i~~Rl~~y~~~t~pvi~~y~----~-~~~~~~Idg~~~ieeV 174 (185)
T PRK02496 127 AR-----GRKD-------------DTEEVIRRRLEVYREQTAPLIDYYR----D-RQKLLTIDGNQSVEAV 174 (185)
T ss_pred CC-----CCCC-------------CCHHHHHHHHHHHHHHHHHHHHHHH----H-CCCEEEEECCCCHHHH
T ss_conf 46-----7678-------------9889999999999999999999998----4-6978999899998999
No 123
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=96.95 E-value=0.00056 Score=46.74 Aligned_cols=48 Identities=29% Similarity=0.380 Sum_probs=35.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC------------------CCCEEEEEECCCCCCHHHHHH
Q ss_conf 999527866673379999999997338------------------986899950887588268876
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQIS------------------NFKVSLITTDGFLFPNAVLTA 132 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~------------------~~~V~lis~DgF~~~n~~l~~ 132 (311)
.|||.|++||||||+.++|..++.... ...+..|++|.+++.....+.
T Consensus 32 ~v~ivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eN 97 (220)
T cd03245 32 KVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDN 97 (220)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHHCHHHHHHCEEEECCCCEEECCCHHHH
T ss_conf 999999999859999999967254786589999999577259999732699916896766759998
No 124
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=96.95 E-value=0.011 Score=38.03 Aligned_cols=40 Identities=18% Similarity=0.154 Sum_probs=31.9
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
Q ss_conf 8767999527866673379999999997338986899950887588
Q gi|254780827|r 81 KIPFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFP 126 (311)
Q Consensus 81 k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~ 126 (311)
.-|-||=|.|.+||||||+++.|..-|. ...+--|+||-+
T Consensus 6 ~~~~iiVVMGVsGsGKSTig~~LA~~l~------~~fiegDdfHp~ 45 (177)
T PRK11545 6 HDHHIYVLMGVSGSGKSAVASAVAHQLH------AAFLDGDFLHPR 45 (177)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHC------CCEECCCCCCCH
T ss_conf 8875999984798999999999999819------985536555899
No 125
>pfam01583 APS_kinase Adenylylsulphate kinase. Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif.
Probab=96.94 E-value=0.0015 Score=43.90 Aligned_cols=41 Identities=29% Similarity=0.213 Sum_probs=32.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 767999527866673379999999997338986899950887
Q gi|254780827|r 82 IPFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGF 123 (311)
Q Consensus 82 ~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF 123 (311)
.||||=++|=|||||||+|+.|..-|... ...|.++-.|.+
T Consensus 1 kG~viW~TGLsGsGKTTlA~~l~~~L~~~-~~~~~~LDGD~~ 41 (157)
T pfam01583 1 RGCTVWFTGLSGSGKSTIANALERKLFAQ-GISVYVLDGDNV 41 (157)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHC-CCCEEEECCHHH
T ss_conf 98899988989999999999999999975-997799768877
No 126
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.92 E-value=0.0024 Score=42.49 Aligned_cols=45 Identities=33% Similarity=0.414 Sum_probs=31.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC----------------------CCCCEEEEEECCCCCCHHH
Q ss_conf 99952786667337999999999733----------------------8986899950887588268
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQI----------------------SNFKVSLITTDGFLFPNAV 129 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~----------------------~~~~V~lis~DgF~~~n~~ 129 (311)
++||.|+|||||||+.+.+.-|+..- ...+|..|-+|.=++|.-.
T Consensus 25 ~~~iiGpSGsGKSTll~~i~GL~~p~sG~I~~~G~~~~~~~~~~~~~~~~r~ig~VfQ~~~Lfp~lt 91 (214)
T cd03297 25 VTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLN 91 (214)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCC
T ss_conf 9999999973599999999849999964999999997665412467713487589767876578891
No 127
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=96.87 E-value=0.0016 Score=43.59 Aligned_cols=145 Identities=23% Similarity=0.271 Sum_probs=70.1
Q ss_pred EECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCHHH----CCCCHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 52786667337999999999733898689995088758826887600020----18981331289999999974126640
Q gi|254780827|r 88 ITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTANNLMQ----RKGFPESYDSNKLLTFLSDVKSGKKK 163 (311)
Q Consensus 88 IAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~~~l~~----rkGfPeS~D~~~L~~~L~~lK~G~~~ 163 (311)
++|-+||||||+||.|..-+.+-.+-.|.+|+-|++. |....+..+... -|-+= -.=+..+..|+..+++|. .
T Consensus 4 LcGLPaAGKTTLar~L~~~l~~~~gw~v~vI~YDdlI-p~~~~e~e~~~~~~s~WK~~R-q~lLk~LE~fl~al~n~~-~ 80 (340)
T TIGR03575 4 LCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDII-PEAAFELDQSREIPSQWKQFR-QELLKYLEHFLVAVINGS-E 80 (340)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEHHHHC-CHHHHCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHHHCCC-C
T ss_conf 3269878736899999999864447605898621214-254531235776613799999-999999999999984533-3
Q ss_pred EEEECC-------CCCC----CCC-C-CC--C--------EEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEE
Q ss_conf 587404-------4322----565-8-98--3--------6998689659970610035765457577740100023115
Q gi|254780827|r 164 VAVPRY-------SHSQ----YDI-L-EG--E--------YDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFS 220 (311)
Q Consensus 164 V~~PvY-------sh~~----~D~-v-p~--~--------~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~s 220 (311)
+..|-- +|.. -+. + ++ + ...+..|=++|+.-.+..+.-+--..+-.+-+ ..-=-.
T Consensus 81 ~~~p~~~t~~~w~~fi~cL~eqgL~i~~~~~~~~~~~~l~~~~~~~pl~iiLDDNfyY~SMRye~yqLark~--~~gf~q 158 (340)
T TIGR03575 81 LSAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPAVSRPLCLVLDDNFYYQSMRYEVYQLARKY--SLGFCQ 158 (340)
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHH--CCCEEE
T ss_conf 678755675215777777652254334565534432200244567753799546148888899999999981--875279
Q ss_pred EEEECCHHHHHHHHHHH
Q ss_conf 77308899988799887
Q gi|254780827|r 221 IYIDADKRDIHRWYLNR 237 (311)
Q Consensus 221 IyVDad~~~i~~wyi~R 237 (311)
||++++.+.+.+|=..|
T Consensus 159 i~l~c~le~cl~RN~~R 175 (340)
T TIGR03575 159 LFLDCPVESCLLRNKQR 175 (340)
T ss_pred EEECCCHHHHHHHCCCC
T ss_conf 88628799999740258
No 128
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=96.87 E-value=0.029 Score=35.14 Aligned_cols=139 Identities=23% Similarity=0.211 Sum_probs=72.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCHHHCC--CCHHHH------HHHH-HHH
Q ss_conf 7679995278666733799999999973389868999508875882688760002018--981331------2899-999
Q gi|254780827|r 82 IPFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTANNLMQRK--GFPESY------DSNK-LLT 152 (311)
Q Consensus 82 ~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~~~l~~rk--GfPeS~------D~~~-L~~ 152 (311)
.+.+|.|-|.-||||||.++.|...|..-+- +|.+..-=|. -|-.+.-+.-+.+.. -.|.+. |... +.+
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~-~v~~trEP~~-~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~h~~~ 79 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGI-KVVLTREPGG-TPIGEKIRELLLNGEEKLSPKAEALLFAADRAQHLEE 79 (208)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCC-EEEEEECCCC-CHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9629999788889889999999999998298-0799868999-8699999999738866788899999999999999999
Q ss_pred HHH-HHHCCCCEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHHHH
Q ss_conf 999-7412664058740443225658983699868965997061003576545757774010002311577308899988
Q gi|254780827|r 153 FLS-DVKSGKKKVAVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADKRDIH 231 (311)
Q Consensus 153 ~L~-~lK~G~~~V~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~i~ 231 (311)
.+. +++.|+ .|-..-|...+.--- +. ...-+.=.+.=+|-+.++.+ .=|+.+|+|.|.++..
T Consensus 80 ~i~pal~~g~-vVI~DRy~~Ss~AYQ-g~---~~~~~~~~~~~l~~~~~~~~------------~PD~ti~Ldv~~e~al 142 (208)
T COG0125 80 VIKPALKEGK-VVICDRYVDSSLAYQ-GG---GRGLDLDWVLALNEFAPGGL------------KPDLTLYLDVPPEVAL 142 (208)
T ss_pred HHHHHHCCCC-EEEECCCCCHHHHHH-HH---HCCCCHHHHHHHHHHCCCCC------------CCCEEEEEECCHHHHH
T ss_conf 9788762899-999878313788853-53---05999899999997654789------------9988999948889999
Q ss_pred HHHHHHHH
Q ss_conf 79988788
Q gi|254780827|r 232 RWYLNRFL 239 (311)
Q Consensus 232 ~wyi~Rf~ 239 (311)
+|--.|..
T Consensus 143 ~R~~~r~~ 150 (208)
T COG0125 143 ERIRKRGE 150 (208)
T ss_pred HHHHHCCC
T ss_conf 99983277
No 129
>TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; InterPro: IPR005863 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF, 6.3.2.15 from EC), which is required to catalyze the final step in the synthesis of the cytoplasmic precursor of the bacterial cell wall peptidoglycan. ATP + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptanedioate + D-alanyl-D-alanine = ADP + phosphate + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanyl-D-alanine.. The crystal structure of the MurF apo-enzyme has been determined and refined to 2.3 A resolution. It contains three consecutive open alpha/beta-sheet domains. The topology of the N-terminal domain of MurF is unique, while its central and C-terminal domains exhibit similar mononucleotide and dinucleotide-binding folds to MurD. The apo-enzyme of MurF crystal structure reveals an open conformation with the three domains juxtaposed in a crescent-like arrangement creating a wide-open space where substrates are expected to bind. As such, catalysis is not feasible and significant domain closure is expected upon substrate binding . ; GO: 0005524 ATP binding, 0008766 UDP-N-acetylmuramoylalanyl-D-glutamyl-26-diaminopimelate-D-alanyl-D-alanine ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=96.86 E-value=0.0021 Score=42.90 Aligned_cols=59 Identities=27% Similarity=0.300 Sum_probs=41.2
Q ss_pred HHHH-HHHHHHHHHHHCCCCCCCCCE--EEEEECCCCCCHHHHHHHHHHHHHHCCC-CCEEEEEECCC
Q ss_conf 9999-998999998716776678767--9995278666733799999999973389-86899950887
Q gi|254780827|r 60 VNSA-KITCHQYNKFLNLKEESKIPF--VVGITGSVAVGKSTFARILCILLQQISN-FKVSLITTDGF 123 (311)
Q Consensus 60 ~~~~-~~~~~~~~~fl~~~~~~k~Pf--IIGIAG~~asGKST~Ar~L~~lL~~~~~-~~V~lis~DgF 123 (311)
|+.+ ..--...+.+...+ -.+. ||||+|| ||||||=..+..+|++... ....+.|..+|
T Consensus 61 V~DtV~~AL~~lA~~~~~~---~~~~~~~igiTGS--~GKTTtKEm~~~iL~~~~~~~~aV~~t~GN~ 123 (462)
T TIGR01143 61 VDDTVLAALQALASAKREK---FSAKRRVIGITGS--SGKTTTKEMLAAILSHKYKDSEAVLATPGNF 123 (462)
T ss_pred EECHHHHHHHHHHHHHHHH---CCCCEEEEEEECC--CCHHHHHHHHHHHHHHHCCCCCCEEECCCCC
T ss_conf 8065899999999999974---3997589998568--9606799999999985359753236248876
No 130
>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.
Probab=96.86 E-value=0.00065 Score=46.29 Aligned_cols=34 Identities=41% Similarity=0.458 Sum_probs=24.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC--CCEEEEEECCCC
Q ss_conf 9995278666733799999999973389--868999508875
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISN--FKVSLITTDGFL 124 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~--~~V~lis~DgF~ 124 (311)
++||=|+|||||||+||+| +.-|+. -+|-+ ||.=
T Consensus 358 ~laIIGPSgSGKStLaR~~---vG~W~~~~G~VRL---DGad 393 (556)
T TIGR01842 358 ALAIIGPSGSGKSTLARIL---VGIWPPASGSVRL---DGAD 393 (556)
T ss_pred EEEEECCCCCCHHHHHHHH---HHCCCCCCCCEEE---EHHH
T ss_conf 5888747865258898788---7210135653364---0334
No 131
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.86 E-value=0.0049 Score=40.38 Aligned_cols=36 Identities=28% Similarity=0.400 Sum_probs=28.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
Q ss_conf 999527866673379999999997338986899950887588
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFP 126 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~ 126 (311)
||=+.|.+||||||+|+.|..-+ ....+.-|.||.+
T Consensus 1 liiv~GvsGsGKSTia~~La~~l------g~~~i~~D~~h~~ 36 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL------GAPFIDGDDLHPP 36 (150)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH------CCCEECCCCCCCH
T ss_conf 98999189999999999999971------9956415433547
No 132
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.83 E-value=0.0011 Score=44.83 Aligned_cols=24 Identities=42% Similarity=0.596 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
++||.|++||||||+++.|.-++.
T Consensus 30 ~vaIvG~sGsGKSTLl~ll~gl~~ 53 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999999809999999966666
No 133
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.82 E-value=0.0029 Score=41.94 Aligned_cols=24 Identities=42% Similarity=0.472 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
++||.|++||||||+++.|.-++.
T Consensus 22 ~vaiiG~sGsGKSTLl~~l~GLl~ 45 (276)
T PRK13634 22 YVAIIGHTGSGKSTLLQHLNGLLK 45 (276)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999999699999999974999
No 134
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=96.81 E-value=0.001 Score=44.95 Aligned_cols=41 Identities=29% Similarity=0.448 Sum_probs=28.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-CCCEEEEEECC---CCCCHH
Q ss_conf 999527866673379999999997338-98689995088---758826
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQIS-NFKVSLITTDG---FLFPNA 128 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~-~~~V~lis~Dg---F~~~n~ 128 (311)
+|=|+|++||||||| |..++.... +....+||.-| |.++|+
T Consensus 129 LiLVTGPTGSGKSTT---lAsmIDyIN~~~~~HIiTIEDPIEyvh~~~ 173 (350)
T TIGR01420 129 LILVTGPTGSGKSTT---LASMIDYINKNKAGHIITIEDPIEYVHKNK 173 (350)
T ss_pred CEEEECCCCCCHHHH---HHHHHHHHHCCCCCCCEEEECCEEEEECCC
T ss_conf 389876889867899---999997874038888256317731410477
No 135
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.81 E-value=0.014 Score=37.23 Aligned_cols=170 Identities=17% Similarity=0.181 Sum_probs=81.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHH----HH--HHHCHHHCCC--CHHHHHHHHHHHHHHHH
Q ss_conf 9952786667337999999999733898689995088758826----88--7600020189--81331289999999974
Q gi|254780827|r 86 VGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNA----VL--TANNLMQRKG--FPESYDSNKLLTFLSDV 157 (311)
Q Consensus 86 IGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~----~l--~~~~l~~rkG--fPeS~D~~~L~~~L~~l 157 (311)
|=|.|++||||+|.|+.|..-+ .+..||+-+.+.... .+ +.+..+.+ | .|+..=.+++.+.|...
T Consensus 2 i~l~G~PGsGKgTqa~~La~~~------~~~~is~gdlLR~~~~~~t~~g~~i~~~~~~-G~lvp~~i~~~l~~~~l~~~ 74 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY------GLPHISTGDLLREEIASGTELGKKAKEYIDS-GKLVPDEIVIKLLKERLKKP 74 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHH------CCEEECHHHHHHHHHHCCCHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHCC
T ss_conf 8998999998799999999997------9846768899999997499589999999987-99778999999999998476
Q ss_pred HCCCCEEEEECCCCCCCCCCCCCEEEECCCCEEEEECC--HHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHHHHHHHH
Q ss_conf 12664058740443225658983699868965997061--0035765457577740100023115773088999887998
Q gi|254780827|r 158 KSGKKKVAVPRYSHSQYDILEGEYDTIIQPDILLIEGI--NVLQQNSLSDNQKATPMISDFLDFSIYIDADKRDIHRWYL 235 (311)
Q Consensus 158 K~G~~~V~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi--~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~i~~wyi 235 (311)
-. ..=.|++|. +.-|...+- . ........|..|+++++++.+.+|..
T Consensus 75 ~~---------------------------~~g~ilDGfPR~~~Qa~~l~--~--~~~~~~~~~~vi~l~~~~~~~~~Rl~ 123 (194)
T cd01428 75 DC---------------------------KKGFILDGFPRTVDQAEALD--E--LLDEGIKPDKVIELDVPDEVLIERIL 123 (194)
T ss_pred CC---------------------------CCCEEEECCCCCHHHHHHHH--H--HHHCCCCCCEEEEEECCHHHHHHHHH
T ss_conf 54---------------------------38778747979899999999--9--99739987889999668999999996
Q ss_pred HHHHHHHHHHCCCHHHHHH---------HHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEE
Q ss_conf 8788876652016777998---------86059--989999999999886316689995201313664999758998464
Q gi|254780827|r 236 NRFLKLRETAFLNPRSYFH---------HFTEI--SEEQSLKIAETAWNNINLPNLQHNILPTRKRADLILSKGEDHSVK 304 (311)
Q Consensus 236 ~Rf~~lr~~a~~~~~s~~~---------~y~~l--~~~ea~~~a~~iW~~in~pnl~e~I~PTr~rADlIi~k~~~H~v~ 304 (311)
.|...-.. ...|| ...+. +.++++..-...+++...|-++.|- + -+.+..-+++-.++
T Consensus 124 ~R~~~~~~------g~~~~~~~~~~~~~~~~~R~DD~~e~i~~Rl~~y~~~~~pv~~~y~----~-~~~~~~Id~~~~~e 192 (194)
T cd01428 124 GRRICPVS------GRVYHLGKDDVTGEPLSQRSDDNEETIKKRLEVYKEQTAPLIDYYK----K-KGKLVEIDGSGDID 192 (194)
T ss_pred CCCCCCCC------CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH----H-CCCEEEEECCCCCC
T ss_conf 46767766------6624556677656666788898699999999999999889999998----2-79789997999967
No 136
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.80 E-value=0.0013 Score=44.24 Aligned_cols=24 Identities=38% Similarity=0.522 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
++||.|.+||||||+.++|.-+++
T Consensus 30 ~i~ivG~sGsGKSTLl~ll~gl~~ 53 (171)
T cd03228 30 KVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999999839999999976775
No 137
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.80 E-value=0.0023 Score=42.62 Aligned_cols=24 Identities=38% Similarity=0.508 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
++||.|++||||||+.++|.-++.
T Consensus 35 ~~~i~G~sGsGKSTLlk~i~gl~~ 58 (225)
T PRK10247 35 FKLITGPSGCGKSTLLKIVASLIS 58 (225)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999999999999999999964668
No 138
>KOG0057 consensus
Probab=96.80 E-value=0.0042 Score=40.84 Aligned_cols=61 Identities=28% Similarity=0.473 Sum_probs=39.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCC-----------------CEEEEEECCCCCCHHHHHHHCHHHCCCCHHHHHHH
Q ss_conf 9952786667337999999999733898-----------------68999508875882688760002018981331289
Q gi|254780827|r 86 VGITGSVAVGKSTFARILCILLQQISNF-----------------KVSLITTDGFLFPNAVLTANNLMQRKGFPESYDSN 148 (311)
Q Consensus 86 IGIAG~~asGKST~Ar~L~~lL~~~~~~-----------------~V~lis~DgF~~~n~~l~~~~l~~rkGfPeS~D~~ 148 (311)
+||.|++||||||+-|.|-..+..-++- -+..|++|+-+..+..+.. -.+|.|..=|-+
T Consensus 381 VaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~N----I~YGn~sas~ee 456 (591)
T KOG0057 381 VAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYN----IKYGNPSASDEE 456 (591)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCEEECCEEHHHHCHHHHHHHEEEECCCCCCCCHHHHHH----HHCCCCCCCHHH
T ss_conf 9897899987889999999974468859998733765075776522167677664300659988----632898768899
Q ss_pred HH
Q ss_conf 99
Q gi|254780827|r 149 KL 150 (311)
Q Consensus 149 ~L 150 (311)
-+
T Consensus 457 V~ 458 (591)
T KOG0057 457 VV 458 (591)
T ss_pred HH
T ss_conf 99
No 139
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.75 E-value=0.00046 Score=47.29 Aligned_cols=73 Identities=19% Similarity=0.134 Sum_probs=38.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-CCCEEEEEECCCCCCHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997338-9868999508875882688760002018981331289999999974
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQIS-NFKVSLITTDGFLFPNAVLTANNLMQRKGFPESYDSNKLLTFLSDV 157 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~-~~~V~lis~DgF~~~n~~l~~~~l~~rkGfPeS~D~~~L~~~L~~l 157 (311)
|+||.|+.||||||+.+.|.-+..--+ ..+|.+-..|=--++-.+..+.++.-..-.|..++--.+.++++.+
T Consensus 28 i~~iiGpnGaGKSTLl~~i~G~~~~~~~~G~I~~~g~~i~~~~~~~~~~~gi~~~~q~~~~~~~~~~~~~l~~~ 101 (200)
T cd03217 28 VHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYV 101 (200)
T ss_pred EEEEECCCCCCHHHHHHHHCCCCCCCCCCCEEEECCEECCCCCHHHHHHCCEEEECCCHHHCCCCCHHHHHHHH
T ss_conf 99999689999999999970777778520079999999886999999976948963676870798499999764
No 140
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=96.74 E-value=0.0035 Score=41.32 Aligned_cols=108 Identities=25% Similarity=0.311 Sum_probs=51.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCC---------------------------EEEEEECCCCCCHH-HHHH--HC
Q ss_conf 999527866673379999999997338986---------------------------89995088758826-8876--00
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFK---------------------------VSLITTDGFLFPNA-VLTA--NN 134 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~---------------------------V~lis~DgF~~~n~-~l~~--~~ 134 (311)
++||.|++||||||+.+.|.-++..- ..+ +..|.++.-++|+. +.+. .+
T Consensus 29 ~~aliG~sGsGKSTLl~~l~gl~~p~-~G~i~~~~~~i~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~eni~~~ 107 (248)
T PRK11264 29 VVAIIGPSGSGKTTLLRCINLLEQPE-AGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEG 107 (248)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC-CCEEEECCEEECCCCCCCCCHHHHHHHHHCEEEEECCCCCCCCCCHHHHHHHH
T ss_conf 99999999980999999997589999-86799999995288756432779999872527990277558887799999999
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEEE--CCCCCCCCCCCCCEEEECCCCEEEEEC
Q ss_conf 020189813312899999999741266405874--044322565898369986896599706
Q gi|254780827|r 135 LMQRKGFPESYDSNKLLTFLSDVKSGKKKVAVP--RYSHSQYDILEGEYDTIIQPDILLIEG 194 (311)
Q Consensus 135 l~~rkGfPeS~D~~~L~~~L~~lK~G~~~V~~P--vYsh~~~D~vp~~~~vi~~pdIIIvEG 194 (311)
....++.|..-..+...+.|..+.-... ...+ ..|--.-.|+.=..-....|+|||..=
T Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~vgL~~~-~~~~p~~LSGGq~QRvaiAraL~~~P~iLllDE 168 (248)
T PRK11264 108 PVIVKGEPKEEATARARELLAKVGLAGK-ETSYPRRLSGGQQQRVAIARALAMRPEVILFDE 168 (248)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHCCCCCH-HHCCCCCCCHHHHHHHHHHHHCCCCCCEEEECC
T ss_conf 9996699889999999999998599513-337801089999889998763147999999879
No 141
>PRK09518 bifunctional cytidylate kinase/GTP-binding protein; Reviewed
Probab=96.74 E-value=0.0015 Score=43.84 Aligned_cols=26 Identities=35% Similarity=0.549 Sum_probs=22.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 67999527866673379999999997
Q gi|254780827|r 83 PFVVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 83 PfIIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
-+||.|=|++||||||+|+.|..-|.
T Consensus 4 ~iiIAIDGPagsGKSTvak~lA~~Lg 29 (714)
T PRK09518 4 MIIVAIDGPAGVGKSSVSRALAQYFG 29 (714)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 88999778986589999999999949
No 142
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=96.73 E-value=0.0012 Score=44.41 Aligned_cols=38 Identities=26% Similarity=0.444 Sum_probs=27.6
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 876799952786667337999999999733898689995088758
Q gi|254780827|r 81 KIPFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLF 125 (311)
Q Consensus 81 k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~ 125 (311)
+.| ||.|=|++||||||+|+.|..-|. ..-+.|-.+|.
T Consensus 283 ~~~-IIAIDGPAgSGKSTvAK~lA~~L~------~~yLDTGamYR 320 (512)
T PRK13477 283 RRP-IIAIDGPAGAGKSTVTRAVAKKLG------LLYLDTGAMYR 320 (512)
T ss_pred CCC-EEEEECCCCCCHHHHHHHHHHHHC------CCEECCCHHHH
T ss_conf 887-799867875787899999999819------96862449999
No 143
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=96.73 E-value=0.0018 Score=43.38 Aligned_cols=68 Identities=24% Similarity=0.237 Sum_probs=39.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CC-----------------CCEEEEEECCCCCCHHHHHHHCHHHCCCCHHHHH
Q ss_conf 99952786667337999999999733-89-----------------8689995088758826887600020189813312
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQI-SN-----------------FKVSLITTDGFLFPNAVLTANNLMQRKGFPESYD 146 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~-~~-----------------~~V~lis~DgF~~~n~~l~~~~l~~rkGfPeS~D 146 (311)
.+||.|++||||||++++|..+.... +. ..+..|++|.|++++...+. ....|
T Consensus 351 ~vaiVG~SGsGKSTL~~LL~r~y~p~~G~I~idG~di~~~~~~~lR~~i~~V~Qd~~LF~~ti~~n---------~~~~~ 421 (547)
T PRK10522 351 LLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDVHLFDQLLGPE---------GKPAN 421 (547)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHCEEECCCCCHHHHHHHHC---------CCCCH
T ss_conf 899989999977999999828966999869899999996899999854169857740457776643---------42311
Q ss_pred HHHHHHHHHHHHCCC
Q ss_conf 899999999741266
Q gi|254780827|r 147 SNKLLTFLSDVKSGK 161 (311)
Q Consensus 147 ~~~L~~~L~~lK~G~ 161 (311)
.+...+.+..+..+.
T Consensus 422 ~~~~~~~l~~~~~~~ 436 (547)
T PRK10522 422 PALVEKWLEQLKMAH 436 (547)
T ss_pred HHHHHHHHHHCCCCH
T ss_conf 999999999858813
No 144
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.73 E-value=0.012 Score=37.68 Aligned_cols=37 Identities=19% Similarity=0.239 Sum_probs=26.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHH
Q ss_conf 9952786667337999999999733898689995088758826
Q gi|254780827|r 86 VGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNA 128 (311)
Q Consensus 86 IGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~ 128 (311)
|=|.|.+||||||+++.|...|. ...+--|+||-+..
T Consensus 6 ~VVmGVsGsGKSTvg~~LA~~L~------~~fiegDd~Hp~~N 42 (176)
T PRK09825 6 YILMGVSGSGKSLIGSKIAALFS------AKFIDGDDLHPAKN 42 (176)
T ss_pred EEEEECCCCCHHHHHHHHHHHHC------CCEECCCCCCCHHH
T ss_conf 99982898998999999999959------87762344378989
No 145
>PRK00698 tmk thymidylate kinase; Validated
Probab=96.72 E-value=0.016 Score=36.89 Aligned_cols=130 Identities=19% Similarity=0.145 Sum_probs=60.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEE--EECCCCCCHHHHHHHCHHHCC--CCHHHHH------H-HHHHHH
Q ss_conf 9995278666733799999999973389868999--508875882688760002018--9813312------8-999999
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLI--TTDGFLFPNAVLTANNLMQRK--GFPESYD------S-NKLLTF 153 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~li--s~DgF~~~n~~l~~~~l~~rk--GfPeS~D------~-~~L~~~ 153 (311)
+|.|-|.-||||||.++.|.+.|..-+ ..|.+. +.++. -.+.-+.-+.... -.|.+.= . +.+.+.
T Consensus 5 fIviEGiDGsGKsTq~~~L~~~L~~~g-~~v~~t~eP~~t~---~g~~ir~~~~~~~~~~~~~~~~lLf~adR~~~~~~~ 80 (204)
T PRK00698 5 FITIEGIDGAGKSTQIELLAERLEEQG-RDVVFTREPGGTP---LGEKLRELLLDPNEPMDDKTELLLFLAARAQHLEEV 80 (204)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-CCEEEEECCCCCC---HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 999988999989999999999999679-9789986999980---699999998277767998999999999999999999
Q ss_pred HH-HHHCCCCEEEEECCCCC--CCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHHH
Q ss_conf 99-74126640587404432--2565898369986896599706100357654575777401000231157730889998
Q gi|254780827|r 154 LS-DVKSGKKKVAVPRYSHS--QYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADKRDI 230 (311)
Q Consensus 154 L~-~lK~G~~~V~~PvYsh~--~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~i 230 (311)
+. .|.+|+ .|-.=-|-+. .|.-.. ..-+.=-++.++-+..+.+ .=|+.||+|++.+..
T Consensus 81 I~p~L~~g~-iVI~DRy~~S~~aYqg~~------~~~~~~~i~~l~~~~~~~~------------~PDl~i~Ldv~~e~~ 141 (204)
T PRK00698 81 IKPALARGK-WVISDRFIDSSLAYQGGG------RGLDIDLLAALNRFALGGF------------RPDLTLYLDVPPEVG 141 (204)
T ss_pred HHHHHHCCC-EEEEECCCCHHHHHHHHC------CCCCHHHHHHHHHHHHCCC------------CCCEEEEEECCHHHH
T ss_conf 998883699-899836405099999860------7999999999998872799------------998589981799999
Q ss_pred HHHHHHH
Q ss_conf 8799887
Q gi|254780827|r 231 HRWYLNR 237 (311)
Q Consensus 231 ~~wyi~R 237 (311)
.+|.-.|
T Consensus 142 ~~Ri~~R 148 (204)
T PRK00698 142 LARIAAR 148 (204)
T ss_pred HHHHHHC
T ss_conf 9999837
No 146
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.72 E-value=0.0031 Score=41.66 Aligned_cols=37 Identities=22% Similarity=0.252 Sum_probs=28.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 99952786667337999999999733898689995088
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDG 122 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~Dg 122 (311)
||||+|-++|||||+...|-..|.+- +.+|..|-.|+
T Consensus 4 ii~ivG~s~SGKTTLi~kli~~l~~~-G~rV~~IKH~~ 40 (170)
T PRK10751 4 LLAIAAWSGTGKTTLLKKLIPALCAR-GIRPGLIKHTH 40 (170)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHC-CCEEEEEECCC
T ss_conf 79999469999999999999999987-98499994577
No 147
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=96.71 E-value=0.0011 Score=44.71 Aligned_cols=24 Identities=50% Similarity=0.721 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
+.||.|.|||||||+||+|..|+.
T Consensus 319 ~lglVGeSGsGKSTlar~i~gL~~ 342 (539)
T COG1123 319 TLGLVGESGSGKSTLARILAGLLP 342 (539)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899988999998999999948778
No 148
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA; InterPro: IPR011917 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes .; GO: 0005524 ATP binding, 0006869 lipid transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=96.71 E-value=0.001 Score=45.04 Aligned_cols=69 Identities=25% Similarity=0.266 Sum_probs=39.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC---CCHHHHHHH-------------CHHH--CCCCH--HH
Q ss_conf 9995278666733799999999973389868999508875---882688760-------------0020--18981--33
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFL---FPNAVLTAN-------------NLMQ--RKGFP--ES 144 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~---~~n~~l~~~-------------~l~~--rkGfP--eS 144 (311)
+|++-|.|||||||++ .||-||.++.---|.+||-= |..+.|.++ .+.+ .+|-+ +.
T Consensus 390 ~vALVGRSGSGKsTlv----~LlPRFy~p~~G~IllDG~~l~d~~L~~LR~q~alVsQ~V~LFdDTiA~NvaYg~~da~~ 465 (603)
T TIGR02203 390 TVALVGRSGSGKSTLV----NLLPRFYEPDSGQILLDGVDLQDYTLADLRRQVALVSQDVVLFDDTIANNVAYGRLDAEQ 465 (603)
T ss_pred EEEEECCCCCHHHHHH----HHCCCCCCCCCCCEEECCCHHHHCCHHHHHHHHHHHCCCEEECCCCHHHHHHHCCCCCCC
T ss_conf 5998706885389998----552366045888565278404430266356230002152372053267764404234001
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 1289999999974
Q gi|254780827|r 145 YDSNKLLTFLSDV 157 (311)
Q Consensus 145 ~D~~~L~~~L~~l 157 (311)
+|.+.-.+-+.+-
T Consensus 466 ~~~a~v~~A~~~A 478 (603)
T TIGR02203 466 VDRAEVERALAAA 478 (603)
T ss_pred CCHHHHHHHHHHH
T ss_conf 7878999999986
No 149
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.67 E-value=0.0017 Score=43.41 Aligned_cols=120 Identities=19% Similarity=0.188 Sum_probs=64.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHH-HHCHHHCCCCHHHHHHHHHHHHHHH-HHCCCCE
Q ss_conf 9952786667337999999999733898689995088758826887-6000201898133128999999997-4126640
Q gi|254780827|r 86 VGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLT-ANNLMQRKGFPESYDSNKLLTFLSD-VKSGKKK 163 (311)
Q Consensus 86 IGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~-~~~l~~rkGfPeS~D~~~L~~~L~~-lK~G~~~ 163 (311)
|-|-|+|||||||+|+.|.+-+ .+.-++||+++.+...-. +. -...+. +..|+ -
T Consensus 3 iiilG~pGaGK~T~A~~La~~~------~i~hlstgd~~r~~~~~~t~l-----------------g~~~k~~i~~g~-l 58 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKL------GLPHLDTGDILRAAIAERTEL-----------------GEEIKKYIDKGE-L 58 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHC------CCCEECCCCCCCHHHCCCCHH-----------------HHHHHHHHHCCC-C
T ss_conf 9998999998899999999976------997855220111100323689-----------------999999987589-5
Q ss_pred EEEECCCCCCCCCCCCCEEEECCCCEEEEECCH--HCCCCCCCCCCCCCEEEC---CCCCEEEEEECCHHHHHHHHHHHH
Q ss_conf 587404432256589836998689659970610--035765457577740100---023115773088999887998878
Q gi|254780827|r 164 VAVPRYSHSQYDILEGEYDTIIQPDILLIEGIN--VLQQNSLSDNQKATPMIS---DFLDFSIYIDADKRDIHRWYLNRF 238 (311)
Q Consensus 164 V~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~--vL~~~~l~~~~~~~~~vs---D~fD~sIyVDad~~~i~~wyi~Rf 238 (311)
|.--+++....++.... +....+|+.|.= +-|...+. .... --.|+.+.++.+.+.+..|...|+
T Consensus 59 v~d~i~~~~v~~rl~~~----d~~~~~I~dg~PR~~~qa~~l~------r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~ 128 (178)
T COG0563 59 VPDEIVNGLVKERLDEA----DCKAGFILDGFPRTLCQARALK------RLLKELGVRLDMVIELDVPEELLLERLLGRR 128 (178)
T ss_pred CCHHHHHHHHHHHHHHC----CCCCEEEEECCCCHHHHHHHHH------HHHHHCCCCCCEEECCCCCHHHHHHHHHCCC
T ss_conf 04176997999999750----6577299989983699999999------9998639985526024477899999973665
Q ss_pred H
Q ss_conf 8
Q gi|254780827|r 239 L 239 (311)
Q Consensus 239 ~ 239 (311)
.
T Consensus 129 ~ 129 (178)
T COG0563 129 V 129 (178)
T ss_pred C
T ss_conf 4
No 150
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=96.67 E-value=0.0014 Score=44.03 Aligned_cols=24 Identities=38% Similarity=0.488 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
++||.|.+||||||+++.+-.++.
T Consensus 35 ilgivGeSGsGKSTl~~~ilgll~ 58 (327)
T PRK11022 35 VVGIVGESGSGKSVSSLAIMGLID 58 (327)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999998789999999974889
No 151
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.65 E-value=0.0023 Score=42.56 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
++||.|++||||||+.++|.-++.
T Consensus 30 ~~aivG~sGsGKSTLl~~l~G~~~ 53 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCC
T ss_conf 999999998759999999986176
No 152
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein; InterPro: IPR011918 This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins ..
Probab=96.65 E-value=0.0019 Score=43.12 Aligned_cols=68 Identities=32% Similarity=0.466 Sum_probs=43.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC----------------------CCCHHHHHHHCHHHCCCCH
Q ss_conf 999527866673379999999997338986899950887----------------------5882688760002018981
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGF----------------------LFPNAVLTANNLMQRKGFP 142 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF----------------------~~~n~~l~~~~l~~rkGfP 142 (311)
-|.+-||||+||||+= .||-||.+|.=-.|..||- ++..+.+|. -|+|-|
T Consensus 368 tvAlVGPSGAGKSTlf----~LLLRFYDP~~G~ilLDGvd~r~~dP~~lR~~~ALVpQdp~lFa~Sv~eN----IRyGrp 439 (576)
T TIGR02204 368 TVALVGPSGAGKSTLF----QLLLRFYDPQSGRILLDGVDIRDLDPADLRARIALVPQDPALFAASVLEN----IRYGRP 439 (576)
T ss_pred EEEEECCCCCHHHHHH----HHHHHCCCCCCCEEEECCCCHHHCCCHHHHHHCCCCCCCCCCCHHCCHHH----HCCCCC
T ss_conf 5887668876279999----99986048887657746641401680878834440258864102030442----135996
Q ss_pred HHHHHHHHH--------HHHHHHHCC
Q ss_conf 331289999--------999974126
Q gi|254780827|r 143 ESYDSNKLL--------TFLSDVKSG 160 (311)
Q Consensus 143 eS~D~~~L~--------~~L~~lK~G 160 (311)
|+=|-+=-. +|+.+|-.|
T Consensus 440 DAs~~~V~~AA~aA~A~EFI~~LP~G 465 (576)
T TIGR02204 440 DASDEEVEAAARAAHAHEFISALPEG 465 (576)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 66668999999875410156518875
No 153
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.64 E-value=0.0065 Score=39.54 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=22.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 9995278666733799999999973
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQ 109 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~ 109 (311)
++||.|++||||||+++.|.-++..
T Consensus 54 ~vaIIG~nGsGKSTL~~~l~Gll~p 78 (320)
T PRK13631 54 IYFIIGNSGSGKSTLVTHFNGLIKS 78 (320)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 9999949998499999999758889
No 154
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.64 E-value=0.0032 Score=41.62 Aligned_cols=24 Identities=29% Similarity=0.555 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
|+||.|+.||||||+.++|.-+++
T Consensus 29 i~~l~G~NGaGKSTLlkli~Gl~~ 52 (200)
T PRK13540 29 LLHLKGSNGAGKTTLLKLIAGLLN 52 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999988999879999999977858
No 155
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ; InterPro: IPR013364 Proteins in this entry are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase (IPR013363 from INTERPRO) of a type-IV secretion-like system of the obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii..
Probab=96.63 E-value=0.0018 Score=43.33 Aligned_cols=125 Identities=23% Similarity=0.271 Sum_probs=68.5
Q ss_pred EEECCCCCCHHHHHH-HHHHHHHHCCCCCEEEEEE--------CCCCCC-HHHHH--------HHCHHH---CC-----C
Q ss_conf 952786667337999-9999997338986899950--------887588-26887--------600020---18-----9
Q gi|254780827|r 87 GITGSVAVGKSTFAR-ILCILLQQISNFKVSLITT--------DGFLFP-NAVLT--------ANNLMQ---RK-----G 140 (311)
Q Consensus 87 GIAG~~asGKST~Ar-~L~~lL~~~~~~~V~lis~--------DgF~~~-n~~l~--------~~~l~~---rk-----G 140 (311)
=|+|.+||||||++- +-|-.++.+|+.||..+-- -+.+.| -.+.+ ..|+.. |+ |
T Consensus 153 LiCG~TGSGKSTl~AaiY~~~l~t~pdRKivT~EDPvEY~L~~~~~~l~ap~Q~~IGRDv~sFa~Glr~~GlRR~P~IiG 232 (374)
T TIGR02525 153 LICGETGSGKSTLAAAIYRHCLETYPDRKIVTYEDPVEYILGSPDDLLPAPAQSEIGRDVESFAEGLRLAGLRRAPKIIG 232 (374)
T ss_pred EECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCEEEECCCCCCHHCCCCCHHCCCCHHHHHHHHHHCCCCCCCCEEE
T ss_conf 22177897289999999998507488970798657721231885201027630110687678862320124534885344
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEE----EECCCCEEEEECC---------HHCCCCCCCCCC
Q ss_conf 813312899999999741266405874044322565898369----9868965997061---------003576545757
Q gi|254780827|r 141 FPESYDSNKLLTFLSDVKSGKKKVAVPRYSHSQYDILEGEYD----TIIQPDILLIEGI---------NVLQQNSLSDNQ 207 (311)
Q Consensus 141 fPeS~D~~~L~~~L~~lK~G~~~V~~PvYsh~~~D~vp~~~~----vi~~pdIIIvEGi---------~vL~~~~l~~~~ 207 (311)
.=|=-|.+-+-+-+.+=++|.-.+. +.|--.||+.. ..-||++ =|-. +++-..-++..+
T Consensus 233 vGE~rd~et~~AAV~AG~~GHf~LG------TLH~~spGeA~sR~l~~~P~e~--Re~~A~dlLs~l~yiiVQ~Ll~T~D 304 (374)
T TIGR02525 233 VGEIRDLETFQAAVLAGQSGHFCLG------TLHVKSPGEAISRCLQMVPPEM--REAIAFDLLSVLQYIIVQKLLRTTD 304 (374)
T ss_pred ECCHHHHHHHHHHHHHCCCCCCCCC------CCCCCCCHHHHHHHHHCCCCHH--HHHHHHHHHHHHCEEEEEEEECCCC
T ss_conf 1022556789999985156753100------1132473247888752378225--8999999987621123543311689
Q ss_pred CCCEEECCCCCE
Q ss_conf 774010002311
Q gi|254780827|r 208 KATPMISDFLDF 219 (311)
Q Consensus 208 ~~~~~vsD~fD~ 219 (311)
+.+..|++|+=|
T Consensus 305 G~RqAVREYiv~ 316 (374)
T TIGR02525 305 GKRQAVREYIVF 316 (374)
T ss_pred CCEEEEEEEEEE
T ss_conf 973588988887
No 156
>KOG0780 consensus
Probab=96.62 E-value=0.0072 Score=39.21 Aligned_cols=97 Identities=20% Similarity=0.234 Sum_probs=60.1
Q ss_pred HHCCCCCCCCHHHHHHHHCCCCCCCHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE
Q ss_conf 3147999889899998744888468999--------99998999999999999999989999987167766787679995
Q gi|254780827|r 17 VHSKFSSILSKKISNQLLSFDSPIDSTE--------IYKIYFPLSHLLLINVNSAKITCHQYNKFLNLKEESKIPFVVGI 88 (311)
Q Consensus 17 ~~~~~~~~l~~~~~~~l~~~~d~i~~~e--------v~~iy~pl~~ll~~~~~~~~~~~~~~~~fl~~~~~~k~PfIIGI 88 (311)
+.++.+++|..+=.++++..-+.-.+.. ...||--|+.|+.- .+..| ......|=||-+
T Consensus 40 LesDV~~~lV~~l~~nir~~i~~~~~~~G~nk~r~i~~~vf~eL~kl~dp----------~~~~~---~~~K~kpsVimf 106 (483)
T KOG0780 40 LESDVNPRLVKELRENIRKIINLEKLASGVNKRRIIQKAVFDELVKLLDP----------GKSAL---QPKKGKPSVIMF 106 (483)
T ss_pred HHCCCCHHHHHHHHHHHHHHHCHHHHCCCCCHHHHHHHHHHHHHHHHHCC----------CCCCC---CCCCCCCCEEEE
T ss_conf 85258888999999999987462420244578899999999999997189----------97646---615689708999
Q ss_pred ECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHH
Q ss_conf 2786667337999999999733898689995088758826
Q gi|254780827|r 89 TGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNA 128 (311)
Q Consensus 89 AG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~ 128 (311)
+|=.||||||+|-.|..-+++- ..++.+|+-|-| .+-+
T Consensus 107 VGLqG~GKTTtc~KlA~y~kkk-G~K~~LvcaDTF-RagA 144 (483)
T KOG0780 107 VGLQGSGKTTTCTKLAYYYKKK-GYKVALVCADTF-RAGA 144 (483)
T ss_pred EECCCCCCCEEHHHHHHHHHHC-CCCEEEEEECCC-CCCH
T ss_conf 8305788630089999999846-872457760224-5306
No 157
>TIGR02868 CydC ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; InterPro: IPR014223 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents CydC, a member of a heterodimeric ATP-binding cassette-type transporter (ABC transporter). It is involved in the export of glutathione from the cytoplasm to the periplasm and is required for the assembly of both cytochrome c and cytochrome bd , , .; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane.
Probab=96.62 E-value=0.0018 Score=43.34 Aligned_cols=69 Identities=29% Similarity=0.317 Sum_probs=42.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCC---CHHHHHH-----------------HCHHHCCCCHHH-
Q ss_conf 9952786667337999999999733898689995088758---8268876-----------------000201898133-
Q gi|254780827|r 86 VGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLF---PNAVLTA-----------------NNLMQRKGFPES- 144 (311)
Q Consensus 86 IGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~---~n~~l~~-----------------~~l~~rkGfPeS- 144 (311)
|.|.|+|||||||++..|.-+|.- .---||.||..- +..++.+ .|++ -|.||.
T Consensus 390 ~Ai~G~SG~GKsTLL~~L~G~l~P----~~G~vtl~G~~~~~~~~~evrr~v~~~aQ~aHlF~ttvr~NLr--larpdaa 463 (566)
T TIGR02868 390 VAILGPSGSGKSTLLATLAGLLDP----LQGEVTLDGVPVSSLSEDEVRRRVSVFAQDAHLFDTTVRENLR--LARPDAA 463 (566)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCC----CCCCEEECCCCHHHCCCCHHEHHEEECCCCCCCCCCCHHHHHH--HCCCCCC
T ss_conf 898668876578999999840289----9991787773243257311000003127886211054787887--3188889
Q ss_pred ---HHHHHHHHHHHHHHCCC
Q ss_conf ---12899999999741266
Q gi|254780827|r 145 ---YDSNKLLTFLSDVKSGK 161 (311)
Q Consensus 145 ---~D~~~L~~~L~~lK~G~ 161 (311)
=|-|+ .+-|.+++=+.
T Consensus 464 aGDtdeE~-~~aL~~vgL~~ 482 (566)
T TIGR02868 464 AGDTDEEL-LAALERVGLAD 482 (566)
T ss_pred CCCCHHHH-HHHHHHHCCCC
T ss_conf 98888999-99999715802
No 158
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.62 E-value=0.0046 Score=40.56 Aligned_cols=54 Identities=30% Similarity=0.322 Sum_probs=36.9
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCHHHCCCCH
Q ss_conf 787679995278666733799999999973389868999508875882688760002018981
Q gi|254780827|r 80 SKIPFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTANNLMQRKGFP 142 (311)
Q Consensus 80 ~k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~~~l~~rkGfP 142 (311)
...|++|=.+|-|||||||+|..|...|...+ ..+.++--|+- ++|+-...||-
T Consensus 20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G-~~~y~LDGDnv--------R~gL~~dLgFs 73 (197)
T COG0529 20 GQKGAVIWFTGLSGSGKSTIANALEEKLFAKG-YHVYLLDGDNV--------RHGLNRDLGFS 73 (197)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC-CEEEEECCHHH--------HHCCCCCCCCC
T ss_conf 79985999646888878799999999999759-75898557467--------65005788978
No 159
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.60 E-value=0.0012 Score=44.54 Aligned_cols=26 Identities=42% Similarity=0.575 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Q ss_conf 99952786667337999999999733
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQI 110 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~ 110 (311)
+.||.|.|||||||++|.|.-+.+.+
T Consensus 35 ~lgivGeSGsGKSTL~r~l~Gl~~p~ 60 (252)
T COG1124 35 TLGIVGESGSGKSTLARLLAGLEKPS 60 (252)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 89998489898889999995656788
No 160
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=96.58 E-value=0.0046 Score=40.54 Aligned_cols=89 Identities=24% Similarity=0.212 Sum_probs=57.9
Q ss_pred CCCCCHHHHHHHHCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHH
Q ss_conf 998898999987448884----6899999998999999999999999989999987167766787679995278666733
Q gi|254780827|r 22 SSILSKKISNQLLSFDSP----IDSTEIYKIYFPLSHLLLINVNSAKITCHQYNKFLNLKEESKIPFVVGITGSVAVGKS 97 (311)
Q Consensus 22 ~~~l~~~~~~~l~~~~d~----i~~~ev~~iy~pl~~ll~~~~~~~~~~~~~~~~fl~~~~~~k~PfIIGIAG~~asGKS 97 (311)
...+|..++.+...-|++ .+--||.++ |. ..+ ++..++-|.|=.+|=||||||
T Consensus 350 ~~~isgtelr~~L~~G~~IPeWft~PeV~~e-----------------Lr---r~~---PPr~~~G~tiwlTGLsgsGKs 406 (568)
T PRK05537 350 VLDISGTELRRRLREGLEIPEWFSFPEVVAE-----------------LR---RTY---PPRHKQGFTVFFTGLSGAGKS 406 (568)
T ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCHHHHHH-----------------HH---HHC---CCCCCCCEEEEEECCCCCCHH
T ss_conf 0578778999998679989955387789999-----------------99---856---874458649998457888776
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCHHHCCCC
Q ss_conf 79999999997338986899950887588268876000201898
Q gi|254780827|r 98 TFARILCILLQQISNFKVSLITTDGFLFPNAVLTANNLMQRKGF 141 (311)
Q Consensus 98 T~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~~~l~~rkGf 141 (311)
|+|+.|...|.+..+..|.++--|.. +.++-..-||
T Consensus 407 TiA~al~~~L~~~~~~~v~lLDGD~~--------R~~l~~dLgf 442 (568)
T PRK05537 407 TIAKALMAKLMEMRGRPVTLLDGDVV--------RKHLSSELGF 442 (568)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCHHH--------HHHHCCCCCC
T ss_conf 99999999999718927999546888--------7421557898
No 161
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=96.57 E-value=0.00085 Score=45.52 Aligned_cols=103 Identities=21% Similarity=0.238 Sum_probs=51.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC------------------CCEEEEEECCCCCCHHHHHHHCHHHCCCC-----
Q ss_conf 9995278666733799999999973389------------------86899950887588268876000201898-----
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISN------------------FKVSLITTDGFLFPNAVLTANNLMQRKGF----- 141 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~------------------~~V~lis~DgF~~~n~~l~~~~l~~rkGf----- 141 (311)
.|+|.|++||||||++++|.-++....+ ..+..|++|.+++.....+.-.+.+ .+.
T Consensus 493 ~vaIvG~sGsGKSTL~kll~Gl~~p~~G~i~idg~~~~~~~~~~~r~~i~~v~Q~~~lf~gTi~eNi~~~~-~~~~~~~i 571 (694)
T TIGR03375 493 KVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGA-PYADDEEI 571 (694)
T ss_pred EEEEEECCCCCHHHHHHHHCCCCCCCCCEEEECCEECCCCCHHHHHHHCEEECCCCCCCCCCHHHHHHCCC-CCCCHHHH
T ss_conf 89998058987889999855675899887998985425499999973021357677110746999984169-99999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC-CCEE-------EECCCCEEEEE
Q ss_conf 1331289999999974126640587404432256589-8369-------98689659970
Q gi|254780827|r 142 PESYDSNKLLTFLSDVKSGKKKVAVPRYSHSQYDILE-GEYD-------TIIQPDILLIE 193 (311)
Q Consensus 142 PeS~D~~~L~~~L~~lK~G~~~V~~PvYsh~~~D~vp-~~~~-------vi~~pdIIIvE 193 (311)
-++-....+.+++.++-.|-.+ .+-+. +.... |+.+ ...+|+|+|+.
T Consensus 572 ~~a~~~a~l~~~I~~lp~g~~t---~i~e~--G~~LSgGqrQri~lARAl~~~p~ililD 626 (694)
T TIGR03375 572 LRAAELAGVTEFVRRHPDGLDM---QIGER--GRSLSGGQRQAVALARALLRDPPILLLD 626 (694)
T ss_pred HHHHHHHCCHHHHHHCCCCCCC---EECCC--CCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9999981979999718566787---74689--9946899999999999995799989997
No 162
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=96.57 E-value=0.0059 Score=39.84 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
|+||.|++||||||+.+.|.-++.
T Consensus 36 i~~iiGpnGsGKSTLlk~i~Gl~~ 59 (269)
T PRK11831 36 ITAIMGPSGIGKTTLLRLIGGQIA 59 (269)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999993999759999999967988
No 163
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=96.56 E-value=0.0017 Score=43.52 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
||.|.|..||||||+|+.|+..+.
T Consensus 1 iI~IEGnIG~GKTTl~~~La~~l~ 24 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLG 24 (219)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 989967856799999999999859
No 164
>pfam03029 ATP_bind_1 Conserved hypothetical ATP binding protein. Members of this family are found in a range of archaea and eukaryotes and have hypothesized ATP binding activity.
Probab=96.56 E-value=0.003 Score=41.81 Aligned_cols=92 Identities=17% Similarity=0.237 Sum_probs=52.2
Q ss_pred EECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEC----CCCCC-HHHH----HHHCHHHCCCC-H---HHHHHHHHHHHH
Q ss_conf 5278666733799999999973389868999508----87588-2688----76000201898-1---331289999999
Q gi|254780827|r 88 ITGSVAVGKSTFARILCILLQQISNFKVSLITTD----GFLFP-NAVL----TANNLMQRKGF-P---ESYDSNKLLTFL 154 (311)
Q Consensus 88 IAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~D----gF~~~-n~~l----~~~~l~~rkGf-P---eS~D~~~L~~~L 154 (311)
|.|+.||||||+++.+++.+... +.+|.+|-.| .+-|+ +-.. .-+..|...|. | =.|=++.|...+
T Consensus 1 ViGpaGSGKTT~~~~l~~~l~~~-~r~~~vvNLDPA~e~~pY~~~iDIrd~i~~~dvM~~~~LGPNGali~~me~l~~~~ 79 (234)
T pfam03029 1 VVGGAGSGKTTFVGALSEILPLR-GRSVYVVNLDPAAENLPYEADIDIRELITVADVMEDYGLGPNGALTVAMDFGRITL 79 (234)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCCCCCCCCCCCCHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 98989898899999999999977-99759997898665899987771787467999999829897389999999999999
Q ss_pred HHHHCCCCEEEEECCCCCCCCCCCCCEEEEC
Q ss_conf 9741266405874044322565898369986
Q gi|254780827|r 155 SDVKSGKKKVAVPRYSHSQYDILEGEYDTII 185 (311)
Q Consensus 155 ~~lK~G~~~V~~PvYsh~~~D~vp~~~~vi~ 185 (311)
..+... +. ...++...| +||+.....
T Consensus 80 d~l~~~---l~-~~~~y~l~D-tPGQiElf~ 105 (234)
T pfam03029 80 DWLLEE---LE-YEDDYYLFD-TPGQIELFT 105 (234)
T ss_pred HHHHHH---HC-CCCCEEEEE-CCCCEEEEE
T ss_conf 999998---52-557769983-698357654
No 165
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.55 E-value=0.0061 Score=39.72 Aligned_cols=74 Identities=26% Similarity=0.281 Sum_probs=42.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC--------------C--------CCCEEEEEECCCCCCH-HHHHH--HCHHHC
Q ss_conf 799952786667337999999999733--------------8--------9868999508875882-68876--000201
Q gi|254780827|r 84 FVVGITGSVAVGKSTFARILCILLQQI--------------S--------NFKVSLITTDGFLFPN-AVLTA--NNLMQR 138 (311)
Q Consensus 84 fIIGIAG~~asGKST~Ar~L~~lL~~~--------------~--------~~~V~lis~DgF~~~n-~~l~~--~~l~~r 138 (311)
=++||.|++||||||+.+.+.-++..- + ..++..|.+|.-++|+ .+.+. .++ ..
T Consensus 31 e~~~iiG~sGsGKTTll~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr~~Ig~v~Q~~~L~~~ltV~eni~~~~-~~ 109 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPL-LL 109 (218)
T ss_pred CEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCEEEECCCCCCCCCCCHHHHHHHHH-HH
T ss_conf 89999999998699999999669999964999999998879989999986504789866752155643999999999-98
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q ss_conf 89813312899999999741
Q gi|254780827|r 139 KGFPESYDSNKLLTFLSDVK 158 (311)
Q Consensus 139 kGfPeS~D~~~L~~~L~~lK 158 (311)
.|.|..-..+...+.+..+.
T Consensus 110 ~~~~~~~~~~~v~~~l~~l~ 129 (218)
T cd03255 110 AGVPKKERRERAEELLERVG 129 (218)
T ss_pred CCCCHHHHHHHHHHHHHHCC
T ss_conf 49998999999998767679
No 166
>pfam06414 Zeta_toxin Zeta toxin. This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.
Probab=96.54 E-value=0.0042 Score=40.79 Aligned_cols=42 Identities=29% Similarity=0.317 Sum_probs=32.3
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 678767999527866673379999999997338986899950887
Q gi|254780827|r 79 ESKIPFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGF 123 (311)
Q Consensus 79 ~~k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF 123 (311)
....|-.|=+||++||||||+++.+..-+ ....+..|.-|.|
T Consensus 8 ~~~~Pkai~laG~pGAGKS~~~~~~~~~~---~~~~~v~In~D~~ 49 (191)
T pfam06414 8 PQERPVAVLLGGQPGAGKTELARALLEEL---GGGNVVRIDPDEL 49 (191)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHC---CCCCCEEECCHHH
T ss_conf 87698799995799888899999998753---7899389713587
No 167
>PRK10419 nikE nickel transporter ATP-binding protein; Provisional
Probab=96.54 E-value=0.002 Score=43.03 Aligned_cols=22 Identities=45% Similarity=0.625 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q ss_conf 9995278666733799999999
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCIL 106 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~l 106 (311)
++||.|.|||||||+++.|.-+
T Consensus 40 ~l~ivGeSGsGKSTL~r~i~gl 61 (266)
T PRK10419 40 TVALLGRSGCGKSTLARLLVGL 61 (266)
T ss_pred EEEEECCCCCHHHHHHHHHHCC
T ss_conf 9999999997799999999669
No 168
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.53 E-value=0.005 Score=40.32 Aligned_cols=103 Identities=19% Similarity=0.310 Sum_probs=58.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--------------CC--CCCEEEEEECCCCCCHH-HHH--HHCHHHCCCCHHHH
Q ss_conf 9995278666733799999999973--------------38--98689995088758826-887--60002018981331
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQ--------------IS--NFKVSLITTDGFLFPNA-VLT--ANNLMQRKGFPESY 145 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~--------------~~--~~~V~lis~DgF~~~n~-~l~--~~~l~~rkGfPeS~ 145 (311)
+++|-|++||||||+.+.+.-++.. .+ ..++..|.+|.-++|+- +.+ +-++. .++.|.+-
T Consensus 27 ~~~iiGpSGsGKSTLlr~i~Gl~~p~~G~I~~~G~di~~~~~~~r~ig~vfQ~~~Lfp~~tV~eNi~~~l~-~~~~~~~e 105 (235)
T cd03299 27 YFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLK-KRKVDKKE 105 (235)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEECCCCCCCCCCCHHHHHHHHHH-HCCCCHHH
T ss_conf 99999999635999999997499999659999999999999767897894579866899909999999998-76999999
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEE-------EECCCCEEEEEC
Q ss_conf 2899999999741266405874044322565898369-------986896599706
Q gi|254780827|r 146 DSNKLLTFLSDVKSGKKKVAVPRYSHSQYDILEGEYD-------TIIQPDILLIEG 194 (311)
Q Consensus 146 D~~~L~~~L~~lK~G~~~V~~PvYsh~~~D~vp~~~~-------vi~~pdIIIvEG 194 (311)
..+...+.+..+.-. . ..++.-++-.-|+.+ .+..|+++++.=
T Consensus 106 ~~~rv~e~l~~~gl~--~----~~~~~p~~LSGGq~QRVaiARAl~~~P~llllDE 155 (235)
T cd03299 106 IERKVLEIAEMLGID--H----LLNRKPETLSGGEQQRVAIARALVVNPKILLLDE 155 (235)
T ss_pred HHHHHHHHHHHCCCH--H----HHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 999999999877997--7----8748944589999999999999973899899928
No 169
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit; InterPro: IPR006344 This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. C-terminal part of the protein matches a domain found in viral RNA helicase, superfamily 1, IPR000606 from INTERPRO. ; GO: 0008854 exodeoxyribonuclease V activity, 0009338 exodeoxyribonuclease V complex.
Probab=96.53 E-value=0.0022 Score=42.73 Aligned_cols=134 Identities=21% Similarity=0.197 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHH-HHHHHHHHHCCC-----C
Q ss_conf 9999989999999999999999----89999987167766787679995278666733799-999999973389-----8
Q gi|254780827|r 44 EIYKIYFPLSHLLLINVNSAKI----TCHQYNKFLNLKEESKIPFVVGITGSVAVGKSTFA-RILCILLQQISN-----F 113 (311)
Q Consensus 44 ev~~iy~pl~~ll~~~~~~~~~----~~~~~~~fl~~~~~~k~PfIIGIAG~~asGKST~A-r~L~~lL~~~~~-----~ 113 (311)
.-+.+--+|.++...--...++ .+..... ..-+.+ +.=|+||||.|||||+ |+|..+.+..+. .
T Consensus 205 qr~~~~~~l~~~f~~~~~~~~~~~~D~Q~~a~~-----~aL~~~-f~li~GGPGTGKTTTv~~LL~al~~~~~~~G~~~~ 278 (753)
T TIGR01447 205 QREAILAILENLFPLLNEQNGRKVTDWQKVAVA-----LALKSN-FSLITGGPGTGKTTTVARLLLALIKQSPKQGKPRL 278 (753)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHCC-EEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf 889999999998542104544311379999999-----986087-68998798897789999999999998986499740
Q ss_pred CEEEEEECCCCCCHHHHHH------HCHHHCC---CCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEE
Q ss_conf 6899950887588268876------0002018---981331289999999974126640587404432256589836998
Q gi|254780827|r 114 KVSLITTDGFLFPNAVLTA------NNLMQRK---GFPESYDSNKLLTFLSDVKSGKKKVAVPRYSHSQYDILEGEYDTI 184 (311)
Q Consensus 114 ~V~lis~DgF~~~n~~l~~------~~l~~rk---GfPeS~D~~~L~~~L~~lK~G~~~V~~PvYsh~~~D~vp~~~~vi 184 (311)
+|.+++==| +--+.|.+ ..+...- +--.-.+...-...+.+|- |...|.-+.|-|....+.|
T Consensus 279 ~I~l~APTG--KAa~RL~esl~~~~~~L~~~~~aid~~~~~~~~~~~~TiHrLL-G~~~I~~~~fr~h~~N~L~------ 349 (753)
T TIGR01447 279 RIALAAPTG--KAAARLAESLRKAVKKLAAENMAIDEDLIAALPSEATTIHRLL-GIKPIDTKRFRHHERNPLP------ 349 (753)
T ss_pred EEEEECCCH--HHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHH-CCCCCCCCCCCCCCCCCCC------
T ss_conf 478866844--7999999999988632234236658798548720456888861-6614787677677778898------
Q ss_pred CCCCEEEE-EC
Q ss_conf 68965997-06
Q gi|254780827|r 185 IQPDILLI-EG 194 (311)
Q Consensus 185 ~~pdIIIv-EG 194 (311)
-||||| ||
T Consensus 350 --~DVLvvDEa 358 (753)
T TIGR01447 350 --LDVLVVDEA 358 (753)
T ss_pred --CCEEEECCC
T ss_conf --552787060
No 170
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.53 E-value=0.0079 Score=38.97 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 99527866673379999999997
Q gi|254780827|r 86 VGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 86 IGIAG~~asGKST~Ar~L~~lL~ 108 (311)
|-+.|-.||||||+++.|...|.
T Consensus 7 I~liG~~GsGKTtvgk~LA~~L~ 29 (175)
T PRK00131 7 IVLIGMMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89888999998999999999959
No 171
>PRK10418 nikD nickel transporter ATP-binding protein; Provisional
Probab=96.53 E-value=0.0053 Score=40.15 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
++||-|++||||||+++.+..++.
T Consensus 31 ~~aiiG~SGsGKStl~k~llgll~ 54 (254)
T PRK10418 31 VLALVGGSGSGKSLTCAAALGILP 54 (254)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999998789999999957998
No 172
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.51 E-value=0.0075 Score=39.10 Aligned_cols=23 Identities=39% Similarity=0.629 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 99952786667337999999999
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILL 107 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL 107 (311)
++||-|++||||||+.+.+.-|+
T Consensus 28 ~~~iiG~SGsGKSTll~~i~gL~ 50 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99999999972999999997599
No 173
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.51 E-value=0.0081 Score=38.89 Aligned_cols=104 Identities=23% Similarity=0.330 Sum_probs=52.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CC---------------------CCEEEEEE--CCCCCCHHHHHH--HCHHHC
Q ss_conf 99952786667337999999999733-89---------------------86899950--887588268876--000201
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQI-SN---------------------FKVSLITT--DGFLFPNAVLTA--NNLMQR 138 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~-~~---------------------~~V~lis~--DgF~~~n~~l~~--~~l~~r 138 (311)
++||-|++||||||+++.+.-++... +. .+|.+|-+ |+-++...+.++ .+. .+
T Consensus 34 ~vaiiG~nGsGKSTLl~~l~Gll~p~~G~V~~~~~~i~~~~~~~~~~~~~~~vG~VfQ~p~~ql~~~tV~e~vafg~-~n 112 (288)
T PRK13643 34 YTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGP-QN 112 (288)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHHHHCEEEEEECCCCCCCHHHHHHHHHHHH-HH
T ss_conf 99999999947999999997488888856999999856877354479877517999977732024336999999899-98
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCE-------EEECCCCEEEEEC
Q ss_conf 8981331289999999974126640587404432256589836-------9986896599706
Q gi|254780827|r 139 KGFPESYDSNKLLTFLSDVKSGKKKVAVPRYSHSQYDILEGEY-------DTIIQPDILLIEG 194 (311)
Q Consensus 139 kGfPeS~D~~~L~~~L~~lK~G~~~V~~PvYsh~~~D~vp~~~-------~vi~~pdIIIvEG 194 (311)
.|.|..-..+...+.|..+.-.. ...++.-++-.-|+. .....|+|||+.=
T Consensus 113 ~g~~~~e~~~~v~~~l~~vgl~d-----~~~~r~p~~LSGGqkqRvaiA~aLa~~P~vLlLDE 170 (288)
T PRK13643 113 FGIPKEKAEKIAAEKLEMVGLAD-----EFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDE 170 (288)
T ss_pred CCCCHHHHHHHHHHHHHHCCCHH-----HHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 69998999999999999759936-----67527976399999999999999974999999958
No 174
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.51 E-value=0.0031 Score=41.69 Aligned_cols=137 Identities=16% Similarity=0.210 Sum_probs=67.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHH----HCHHHC--------CCCHHHHH--H
Q ss_conf 767999527866673379999999997338986899950887588268876----000201--------89813312--8
Q gi|254780827|r 82 IPFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTA----NNLMQR--------KGFPESYD--S 147 (311)
Q Consensus 82 ~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~----~~l~~r--------kGfPeS~D--~ 147 (311)
.|.||=|+|.+|+||||+|-.|.. +.+- -.+++||.-- ..+.. ...+.. .| |.+-| .
T Consensus 2 ~~~iiligG~sGvGKStla~~lA~---rlgi--~~visTD~IR---evlR~~i~~eP~L~~Ssy~A~~~~~-~~~~~~ii 72 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIAR---HRAI--DIVLSGDYLR---EFLRPYVDDEPVLAKSVYDAWEFYG-SMTDENIV 72 (197)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH---HCCC--CEEECCHHHH---HHHHHHCCCCCCHHHHHHHHHHHCC-CCCHHHHH
T ss_conf 747999857998878999999999---7499--7553434799---9999866887400330467988708-96527899
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCH
Q ss_conf 99999999741266405874044322565898369986896599706100357654575777401000231157730889
Q gi|254780827|r 148 NKLLTFLSDVKSGKKKVAVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADK 227 (311)
Q Consensus 148 ~~L~~~L~~lK~G~~~V~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~ 227 (311)
.++......+..|-..|- +|. +....=+||||+|+.- ........ .+.+=|-+||. |+
T Consensus 73 ~Gf~~q~~~V~~gi~avi---------~Ra------~~eg~slIIEGVHlvP-~~i~~~~~-----~~~~~~~l~i~-de 130 (197)
T PRK12339 73 KGYLDQARAIMPGINRVI---------RRA------LLNGEDLVIESLYFHP-PMIDENRT-----NNIRAFYLYIR-DA 130 (197)
T ss_pred HHHHHHHHHHHHHHHHHH---------HHH------HHCCCCEEEEEEEECH-HHHHHHHH-----CCEEEEEEEEC-CH
T ss_conf 999999999999999999---------999------9739977998521177-88778876-----59589999978-88
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 9988799887888766520167779
Q gi|254780827|r 228 RDIHRWYLNRFLKLRETAFLNPRSY 252 (311)
Q Consensus 228 ~~i~~wyi~Rf~~lr~~a~~~~~s~ 252 (311)
+.-+.|+..|. +.+....|.+.
T Consensus 131 e~H~~Rf~~R~---~~~~~~~p~~r 152 (197)
T PRK12339 131 ELHRSRLADRI---NYTHKNSPGKR 152 (197)
T ss_pred HHHHHHHHHHH---HHCCCCCHHHH
T ss_conf 99999999985---43126771669
No 175
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.51 E-value=0.005 Score=40.33 Aligned_cols=126 Identities=18% Similarity=0.260 Sum_probs=66.5
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCC-CE-EEEEECCCCCCHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 876799952786667337999999999733898-68-9995088758826887600020189813312899999999741
Q gi|254780827|r 81 KIPFVVGITGSVAVGKSTFARILCILLQQISNF-KV-SLITTDGFLFPNAVLTANNLMQRKGFPESYDSNKLLTFLSDVK 158 (311)
Q Consensus 81 k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~-~V-~lis~DgF~~~n~~l~~~~l~~rkGfPeS~D~~~L~~~L~~lK 158 (311)
+...+|-|+|+|||||+|+++.| ++.+|+. .. ...||= +...-|. + | ..|.+-.-.+|...++
T Consensus 5 ~~g~livisGPSG~GK~tl~~~L---~~~~p~~~~~~vs~TTR----~pR~~E~----d--G--~dY~Fvs~eeF~~~i~ 69 (208)
T PRK00300 5 RRGLLIVLSAPSGAGKSTLVRAL---LERDPNDLQLSVSATTR----APRPGEV----D--G--VHYHFVSREEFEEMIE 69 (208)
T ss_pred CCCCEEEEECCCCCCHHHHHHHH---HHHCCCCEEEEEEEECC----CCCCCCC----C--C--CEEEEECHHHHHHHHH
T ss_conf 18838999999988999999999---97299868998974688----9899877----8--9--6579961999999986
Q ss_pred CCCCEEEEEC-CCCCCCCCCCCC-EEEECCCCEEEEE----CCHHCCCCCCCCCCCCCEEECCCC-CEEEEEECCH-HHH
Q ss_conf 2664058740-443225658983-6998689659970----610035765457577740100023-1157730889-998
Q gi|254780827|r 159 SGKKKVAVPR-YSHSQYDILEGE-YDTIIQPDILLIE----GINVLQQNSLSDNQKATPMISDFL-DFSIYIDADK-RDI 230 (311)
Q Consensus 159 ~G~~~V~~Pv-Ysh~~~D~vp~~-~~vi~~pdIIIvE----Gi~vL~~~~l~~~~~~~~~vsD~f-D~sIyVDad~-~~i 230 (311)
+|+- +.+-. +.+. |-..... ...+....++|++ |.--+... +. -.+|||-+|. +.+
T Consensus 70 ~g~F-lE~~~~~g~~-YGT~~~~I~~~~~~G~~vildidvqGa~~lk~~--------------~~~~~~IFI~Pps~e~L 133 (208)
T PRK00300 70 NGEF-LEWAEVFGNY-YGTPREPVEEALAAGKDVLLEIDWQGAQQVKKK--------------MPDAVSIFILPPSLEEL 133 (208)
T ss_pred HCCC-EEEEEECCCC-EECCHHHHHHHHHCCCCEEEECCHHHHHHHHHH--------------CCCCEEEEEECCCHHHH
T ss_conf 2836-6789983870-352469999998569987974678999999985--------------97757999828899999
Q ss_pred HHHHHHH
Q ss_conf 8799887
Q gi|254780827|r 231 HRWYLNR 237 (311)
Q Consensus 231 ~~wyi~R 237 (311)
++|...|
T Consensus 134 ~~RL~~R 140 (208)
T PRK00300 134 ERRLRGR 140 (208)
T ss_pred HHHHHHC
T ss_conf 9999863
No 176
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=96.50 E-value=0.0035 Score=41.34 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
.+||.|++||||||+.+.|.-++.
T Consensus 36 ~v~ivG~sGsGKSTLl~ll~g~~~ 59 (207)
T cd03369 36 KIGIVGRTGAGKSTLILALFRFLE 59 (207)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 999999999879999999998728
No 177
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.50 E-value=0.0022 Score=42.68 Aligned_cols=38 Identities=32% Similarity=0.427 Sum_probs=26.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 7999527866673379999999997338986899950887
Q gi|254780827|r 84 FVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGF 123 (311)
Q Consensus 84 fIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF 123 (311)
-+|+|+|..|+||||+|+.|..-|. ...-.+.+.-|-|
T Consensus 5 ~~IvI~G~IG~GKSTLa~~La~~l~--~~~~~E~vednp~ 42 (216)
T COG1428 5 MVIVIEGMIGAGKSTLAQALAEHLG--FKVFYELVEDNPF 42 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC--CCEEEECCCCCHH
T ss_conf 0899844644687899999998838--8502222467847
No 178
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.50 E-value=0.0084 Score=38.77 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 99952786667337999999999
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILL 107 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL 107 (311)
+++|.|+|||||||+-+++..+.
T Consensus 26 ~~~i~GpSGsGKSTLL~~i~gl~ 48 (206)
T TIGR03608 26 MVAIVGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99998799970999999997599
No 179
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.50 E-value=0.0035 Score=41.31 Aligned_cols=106 Identities=19% Similarity=0.260 Sum_probs=52.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC---------------------CCCEEEEEEC--CCCCCHHHHHH--HCHHHCC
Q ss_conf 999527866673379999999997338---------------------9868999508--87588268876--0002018
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQIS---------------------NFKVSLITTD--GFLFPNAVLTA--NNLMQRK 139 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~---------------------~~~V~lis~D--gF~~~n~~l~~--~~l~~rk 139 (311)
++||.|++||||||+++.|.-++..-. ..+|.+|-++ ..+....+.++ -++ .++
T Consensus 36 ~vaiiG~nGsGKSTL~~~l~Gll~P~~~~~G~i~~~g~~i~~~~~~~lr~~vg~VfQ~P~~q~~~~tV~e~iafgl-~n~ 114 (283)
T PRK13640 36 WTALIGHNGSGKSTISKLINGLLLPDDNPKSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGL-ENR 114 (283)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCHHHHHHCEEEEEECCCCCCCCCCHHHHHHHHH-HHC
T ss_conf 9999999998799999999640378888617999999999967988996261899868876188782999998457-537
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEE-------EECCCCEEEEECCHH
Q ss_conf 9813312899999999741266405874044322565898369-------986896599706100
Q gi|254780827|r 140 GFPESYDSNKLLTFLSDVKSGKKKVAVPRYSHSQYDILEGEYD-------TIIQPDILLIEGINV 197 (311)
Q Consensus 140 GfPeS~D~~~L~~~L~~lK~G~~~V~~PvYsh~~~D~vp~~~~-------vi~~pdIIIvEGi~v 197 (311)
|.|..--.+...+.|..+--. .-...+ .++-.-|+.+ ....|+|||+.==..
T Consensus 115 ~~~~~e~~~~v~~~l~~vgl~-~~~~~~-----p~~LSGGqkQRvaiA~aLa~~P~iLllDEPTs 173 (283)
T PRK13640 115 GVPRPEMIKIVADVLSDVGML-DYIDSE-----PANLSGGQKQRVAIAGILAVEPQIIILDESTS 173 (283)
T ss_pred CCCHHHHHHHHHHHHHHCCCH-HHHHCC-----HHHCCHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 999999999999999877997-776479-----22299999999999999971999999768745
No 180
>KOG1970 consensus
Probab=96.49 E-value=0.023 Score=35.84 Aligned_cols=63 Identities=24% Similarity=0.253 Sum_probs=38.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH----HCCCCCEEEEEECCCCCCHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997----3389868999508875882688760002018981331289999999974
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ----QISNFKVSLITTDGFLFPNAVLTANNLMQRKGFPESYDSNKLLTFLSDV 157 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~----~~~~~~V~lis~DgF~~~n~~l~~~~l~~rkGfPeS~D~~~L~~~L~~l 157 (311)
|.-|+|++|+||||+-++|...|. .|.++ +.+..+-.+|.. ..-.++|-+-+++.+..|+...
T Consensus 112 iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Np-i~~~~~~~~h~~---------t~~~~~~~~s~L~~fesFler~ 178 (634)
T KOG1970 112 ILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNP-INLKEPENLHNE---------TSFLMFPYQSQLAVFESFLLRA 178 (634)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHCCEEEEECCC-CCCCCCCCCCCC---------CHHCCCCHHHHHHHHHHHHHHH
T ss_conf 799857988871319999998648021230477-665665554554---------4001330366789999899998
No 181
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.48 E-value=0.027 Score=35.39 Aligned_cols=176 Identities=18% Similarity=0.241 Sum_probs=82.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCH----HHH--HHHCHHHCCC--CHHHHHHHHHHHHHHHH
Q ss_conf 995278666733799999999973389868999508875882----688--7600020189--81331289999999974
Q gi|254780827|r 86 VGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPN----AVL--TANNLMQRKG--FPESYDSNKLLTFLSDV 157 (311)
Q Consensus 86 IGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n----~~l--~~~~l~~rkG--fPeS~D~~~L~~~L~~l 157 (311)
|=|-|++||||+|.|+.|..-+ ....||+-+.+... +.+ ..+..++ +| .|+..=.+++.+.|...
T Consensus 3 iillG~PGsGKgTqa~~la~~~------~~~~is~GdllR~~i~~~s~~g~~i~~~~~-~G~lVpd~i~~~lv~~~l~~~ 75 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKY------GIPHISTGDMLRAAIKAGTELGKEAKSYMD-AGELVPDEIVIGLVKERLAQP 75 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHH------CCEEECHHHHHHHHHHCCCHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHCC
T ss_conf 9998999998799999999986------991786889999998739988999999997-798778899999999998365
Q ss_pred HCCCCEEEEECCCCCCCCCCCCCEEEECCCCEEEEECC--HHCCCCCCCCCCCCCEEEC---CCCCEEEEEECCHHHHHH
Q ss_conf 12664058740443225658983699868965997061--0035765457577740100---023115773088999887
Q gi|254780827|r 158 KSGKKKVAVPRYSHSQYDILEGEYDTIIQPDILLIEGI--NVLQQNSLSDNQKATPMIS---DFLDFSIYIDADKRDIHR 232 (311)
Q Consensus 158 K~G~~~V~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi--~vL~~~~l~~~~~~~~~vs---D~fD~sIyVDad~~~i~~ 232 (311)
...+ =.|++|. ++-|...+ ..++. --.|.-|++|++++.+.+
T Consensus 76 ~~~~---------------------------G~IlDGfPRt~~Qa~~l------~~~l~~~~~~i~~Vi~l~v~~~~~~~ 122 (215)
T PRK00279 76 DCAN---------------------------GFLLDGFPRTIPQAEAL------DEMLKEAGIKLDAVIEIDVPDEELVE 122 (215)
T ss_pred CCCC---------------------------EEEEECCCCCHHHHHHH------HHHHHHCCCCCCEEEEEECCHHHHHH
T ss_conf 6557---------------------------07986899987999999------99998649986889999688999999
Q ss_pred HHHHHHHHHH-HHH----CCCHHHH------HHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 9988788876-652----0167779------9886059--9899999999998863166899952013136649997589
Q gi|254780827|r 233 WYLNRFLKLR-ETA----FLNPRSY------FHHFTEI--SEEQSLKIAETAWNNINLPNLQHNILPTRKRADLILSKGE 299 (311)
Q Consensus 233 wyi~Rf~~lr-~~a----~~~~~s~------~~~y~~l--~~~ea~~~a~~iW~~in~pnl~e~I~PTr~rADlIi~k~~ 299 (311)
|...|....- +.. +..|..- -.+..+. +.++++..-...|++...|-++-| +++ ..+..-++
T Consensus 123 Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~R~DD~~e~i~~Rl~~y~~~t~pvi~~y----~~~-~~l~~Idg 197 (215)
T PRK00279 123 RLSGRRICPACGRTYHVKFNPPKVEGKCDVTGEELIQRADDNEETVRKRLEVYHKQTAPLIDYY----KKK-GKLKKIDG 197 (215)
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH----HCC-CCEEEEEC
T ss_conf 9861156755676455457898866645543320257999869999999999999888999999----817-97899989
Q ss_pred CCCEEEE
Q ss_conf 9846489
Q gi|254780827|r 300 DHSVKTI 306 (311)
Q Consensus 300 ~H~v~~i 306 (311)
+-.+++|
T Consensus 198 ~~~~~eV 204 (215)
T PRK00279 198 TGSIDEV 204 (215)
T ss_pred CCCHHHH
T ss_conf 8998999
No 182
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.48 E-value=0.014 Score=37.28 Aligned_cols=40 Identities=33% Similarity=0.292 Sum_probs=28.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 79995278666733799999999973389868999508875
Q gi|254780827|r 84 FVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFL 124 (311)
Q Consensus 84 fIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~ 124 (311)
-.+.|.|++|+||||+++.+...+.... ..|..++.+...
T Consensus 3 ~~ill~G~~GsGKTtl~~~la~~~~~~~-~~v~~~~~~~~~ 42 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG-GGVIYIDGEDIL 42 (148)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCCC-CCEEEEEHHHHH
T ss_conf 7899999997029999999998726689-968998759989
No 183
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.48 E-value=0.01 Score=38.26 Aligned_cols=103 Identities=26% Similarity=0.336 Sum_probs=57.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--------------CC--------CCCEEEEEECCCCCCHHH-HH--HHCHHHCC
Q ss_conf 9995278666733799999999973--------------38--------986899950887588268-87--60002018
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQ--------------IS--------NFKVSLITTDGFLFPNAV-LT--ANNLMQRK 139 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~--------------~~--------~~~V~lis~DgF~~~n~~-l~--~~~l~~rk 139 (311)
+++|-|+|||||||+.|.+.-|+.- .+ ..++..|-+|.-++|+-. .+ ..++. ..
T Consensus 52 ~~~ivG~SGsGKSTLLr~i~GL~~p~~G~I~~~G~~i~~~~~~~l~~~r~~~igmVFQ~~aL~P~ltV~eNV~~~L~-~~ 130 (269)
T cd03294 52 IFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLE-VQ 130 (269)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHH-HC
T ss_conf 99999899848999999997599999759999999999999899988525646999615754767879999868888-52
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEE-------EECCCCEEEEEC
Q ss_conf 9813312899999999741266405874044322565898369-------986896599706
Q gi|254780827|r 140 GFPESYDSNKLLTFLSDVKSGKKKVAVPRYSHSQYDILEGEYD-------TIIQPDILLIEG 194 (311)
Q Consensus 140 GfPeS~D~~~L~~~L~~lK~G~~~V~~PvYsh~~~D~vp~~~~-------vi~~pdIIIvEG 194 (311)
|.|..--.+.-.+.|..+.-. . ..-.|-|.. .-|+.+ .+..|+|++..=
T Consensus 131 ~~~~~e~~~rv~e~L~~vgL~--~-~~~~~P~qL---SGGq~QRVaIARALa~~P~iLLlDE 186 (269)
T cd03294 131 GVPRAEREERAAEALELVGLE--G-WEHKYPDEL---SGGMQQRVGLARALAVDPDILLMDE 186 (269)
T ss_pred CCCHHHHHHHHHHHHHHCCCH--H-HHHCCHHHH---CHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 899789999999999867986--7-775696784---9488889999999863998999758
No 184
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=96.47 E-value=0.0026 Score=42.24 Aligned_cols=26 Identities=27% Similarity=0.531 Sum_probs=22.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 67999527866673379999999997
Q gi|254780827|r 83 PFVVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 83 PfIIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
-.||.|-||+||||||+|+.|..-|.
T Consensus 34 ~iIIAIDGPAGSGKSTVAk~lA~~LG 59 (863)
T PRK12269 34 TVIIALDGPAGSGKSSVCRLLASRLG 59 (863)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 88999868986788999999999829
No 185
>CHL00181 cbbX CbbX; Provisional
Probab=96.46 E-value=0.026 Score=35.50 Aligned_cols=72 Identities=28% Similarity=0.271 Sum_probs=42.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCC-CCEEEE
Q ss_conf 6899999998999999999999999989999987167766787679995278666733799999999973389-868999
Q gi|254780827|r 40 IDSTEIYKIYFPLSHLLLINVNSAKITCHQYNKFLNLKEESKIPFVVGITGSVAVGKSTFARILCILLQQISN-FKVSLI 118 (311)
Q Consensus 40 i~~~ev~~iy~pl~~ll~~~~~~~~~~~~~~~~fl~~~~~~k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~-~~V~li 118 (311)
|-+++|.+--.-|..++.+. ..+ .-.|.+. ....+-.-..|++|.||||+||++..+|...+- .+-.++
T Consensus 26 iGL~~VK~~v~~l~~~~~~~--------~~R-~~~Gl~~-~~~s~h~vF~GnPGTGKTTVARl~a~il~~lG~L~~g~vv 95 (287)
T CHL00181 26 IGLVPVKTRIREIAALLLVD--------RLR-KNLGLVS-SSPGLHMSFTGSPGTGKTTVALKMADILYRLGYIKKGHLI 95 (287)
T ss_pred CCHHHHHHHHHHHHHHHHHH--------HHH-HHCCCCC-CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 69699999999999999999--------999-9879998-8876538887899867999999999999986995589589
Q ss_pred EEC
Q ss_conf 508
Q gi|254780827|r 119 TTD 121 (311)
Q Consensus 119 s~D 121 (311)
.++
T Consensus 96 e~~ 98 (287)
T CHL00181 96 TVT 98 (287)
T ss_pred EEC
T ss_conf 953
No 186
>PRK13695 putative NTPase; Provisional
Probab=96.45 E-value=0.0015 Score=43.83 Aligned_cols=37 Identities=32% Similarity=0.524 Sum_probs=27.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 7679995278666733799999999973389868999508875
Q gi|254780827|r 82 IPFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFL 124 (311)
Q Consensus 82 ~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~ 124 (311)
.+.-|+|+|.+|+||||+.+.+...|+..+ +...||+
T Consensus 2 ~~~kI~iTG~PGvGKTTli~Kv~~~L~~~g------~~v~GF~ 38 (174)
T PRK13695 2 AALRIGITGMPGVGKTTLVLKIAELLAREG------YKVGGFI 38 (174)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCC------CEEEEEE
T ss_conf 842999878999889999999999986369------6174699
No 187
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=96.45 E-value=0.021 Score=36.15 Aligned_cols=68 Identities=24% Similarity=0.083 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECC-CCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCH
Q ss_conf 999999989999987167766787679995278-666733799999999973389868999508875882
Q gi|254780827|r 59 NVNSAKITCHQYNKFLNLKEESKIPFVVGITGS-VAVGKSTFARILCILLQQISNFKVSLITTDGFLFPN 127 (311)
Q Consensus 59 ~~~~~~~~~~~~~~fl~~~~~~k~PfIIGIAG~-~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n 127 (311)
+.++.+.++.............+.+-+|.|+.+ +|.||||+|--|...+++.++++|-+|-.| +..|.
T Consensus 11 ~aEa~R~lRt~l~~~~~~~~~~~~~kvi~VTS~~pgeGKTtva~nLA~~lA~~~~~~VLLVDaD-lr~p~ 79 (207)
T TIGR03018 11 IAEEFRKIKRPLLANAFSANRKKNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDAD-LRRPS 79 (207)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECC-CCCCC
T ss_conf 9999999999876641010346788099997899999889999999999997249859999535-78997
No 188
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.44 E-value=0.0084 Score=38.77 Aligned_cols=109 Identities=20% Similarity=0.211 Sum_probs=54.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CC----------------CCEEEEEECCCCCCH-HHHHHHCHH-HCCCCHHHH
Q ss_conf 99952786667337999999999733-89----------------868999508875882-688760002-018981331
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQI-SN----------------FKVSLITTDGFLFPN-AVLTANNLM-QRKGFPESY 145 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~-~~----------------~~V~lis~DgF~~~n-~~l~~~~l~-~rkGfPeS~ 145 (311)
|+||.|+.||||||+.+.+.-++..- +. .++..++++..++++ .+.+.-... .-+|.|..-
T Consensus 30 i~~llG~NGaGKSTLl~~i~Gl~~p~~G~I~i~G~~i~~~~~~~~~~ig~v~q~~~l~~~ltv~e~l~~~~~~~g~~~~~ 109 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSE 109 (220)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEECCCCHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHH
T ss_conf 99999899973999999996698788997799999776588988605699923565687887999999989756999899
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEC--CCCCCCCCCCCCEEEECCCCEEEEEC
Q ss_conf 28999999997412664058740--44322565898369986896599706
Q gi|254780827|r 146 DSNKLLTFLSDVKSGKKKVAVPR--YSHSQYDILEGEYDTIIQPDILLIEG 194 (311)
Q Consensus 146 D~~~L~~~L~~lK~G~~~V~~Pv--Ysh~~~D~vp~~~~vi~~pdIIIvEG 194 (311)
..+...+.+..+.-. +....++ +|.-.-.++.=.......|+|+|+.-
T Consensus 110 ~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~kqrv~ia~al~~~P~lliLDE 159 (220)
T cd03263 110 IKEEVELLLRVLGLT-DKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDE 159 (220)
T ss_pred HHHHHHHHHHHCCCH-HHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 999999999876967-77507576789999999999999956999999958
No 189
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.44 E-value=0.0024 Score=42.44 Aligned_cols=58 Identities=34% Similarity=0.535 Sum_probs=35.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCHHHCCCCHH-----HHHHHHHHHHHHHH
Q ss_conf 99952786667337999999999733898689995088758826887600020189813-----31289999999974
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTANNLMQRKGFPE-----SYDSNKLLTFLSDV 157 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~~~l~~rkGfPe-----S~D~~~L~~~L~~l 157 (311)
.|+|+|.+|+||||+|+.|. .+ + .++ ++. |.-..+.++.. |.+| -.|.+.+..++..+
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~l---g-~~~--i~l------~el~~e~~~~~--~~de~r~s~~vD~d~~~~~le~~ 64 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-EL---G-YKV--IEL------NELAKENGLYT--EYDELRKSVIVDVDKLRKRLEEL 64 (180)
T ss_pred EEEEECCCCCCHHHHHHHHH-HH---C-CCE--EEH------HHHHHHCCCEE--CCCCCCCEEEEEHHHHHHHHHHH
T ss_conf 37993799986687999999-82---9-846--619------99998669711--43776615886679999888887
No 190
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.44 E-value=0.0052 Score=40.19 Aligned_cols=24 Identities=38% Similarity=0.513 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
++||.|++||||||+.+.+.-++.
T Consensus 29 ~~~iiGpsGsGKSTLl~~i~gl~~ 52 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGLVE 52 (241)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999998339999999974999
No 191
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.42 E-value=0.0065 Score=39.53 Aligned_cols=125 Identities=19% Similarity=0.230 Sum_probs=61.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 99952786667337999999999733898689995088758826887600020189813312899999999741266405
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTANNLMQRKGFPESYDSNKLLTFLSDVKSGKKKV 164 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~~~l~~rkGfPeS~D~~~L~~~L~~lK~G~~~V 164 (311)
+|-|+|+|||||+|+++.| ++..++... .+| |-+... +.|-.+- ..|-+-.=.+|-..+++|+- +
T Consensus 3 livl~GpsG~GK~tl~~~l---~~~~~~~~~-~vs----~TTR~~--R~gE~dG----~dY~Fvs~~~F~~~i~~~~F-l 67 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKAL---LEEDPNLKF-SIS----ATTRKP--RPGEVDG----VDYFFVSKEEFEEMIAAGEF-L 67 (180)
T ss_pred EEEEECCCCCCHHHHHHHH---HHHCCCCEE-EEE----CCCCCC--CCCCCCC----CCEEEECHHHHHHHHHCCEE-E
T ss_conf 9999899988999999999---976899448-870----446897--9987788----73478508999999864964-8
Q ss_pred EEECCCCCCCCCCCCC-EEEECCCCEEEEE----CCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCH-HHHHHHHHHH
Q ss_conf 8740443225658983-6998689659970----6100357654575777401000231157730889-9988799887
Q gi|254780827|r 165 AVPRYSHSQYDILEGE-YDTIIQPDILLIE----GINVLQQNSLSDNQKATPMISDFLDFSIYIDADK-RDIHRWYLNR 237 (311)
Q Consensus 165 ~~PvYsh~~~D~vp~~-~~vi~~pdIIIvE----Gi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~-~~i~~wyi~R 237 (311)
.+-.|.-..|-..... ...+....++|++ |.-.+.... +--.+|||.++. +.+++|...|
T Consensus 68 E~~~~~g~~YGt~~~~i~~~~~~gk~vil~id~~G~~~lk~~~-------------~~~~~IfI~pps~~~L~~RL~~R 133 (180)
T TIGR03263 68 EWAEVHGNYYGTPKSPVEEALAAGKDVLLEIDVQGARQVKKKF-------------PDAVSIFILPPSLEELERRLRKR 133 (180)
T ss_pred EEEEECCCCCCCCHHHHHHHHHHCCCEEEECCHHHHHHHHHHC-------------CCEEEEEEECCCHHHHHHHHHHC
T ss_conf 8767716763574799999996099899987899999999758-------------86489999688999999999964
No 192
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein; InterPro: IPR011924 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents LolD, a member of the ABC transporter family. LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on the residue immediately following the modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. Excluded from this entry are homologs from the archaeal genus Methanosarcina .; GO: 0005524 ATP binding, 0006810 transport, 0016020 membrane.
Probab=96.42 E-value=0.002 Score=42.98 Aligned_cols=36 Identities=31% Similarity=0.397 Sum_probs=22.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 9995278666733799999999973389868999508875
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFL 124 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~ 124 (311)
++||.|+|||||||+=.+| .-.-.|.---|..+|=-
T Consensus 33 ~~~IvG~SGSGKSTLLHlL----GGLD~PT~G~v~f~G~~ 68 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLL----GGLDNPTSGEVLFNGQS 68 (221)
T ss_pred EEEEECCCCCCHHHHHHHH----HCCCCCCCCEEEECCCC
T ss_conf 3798736787168999987----30689963158970632
No 193
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.42 E-value=0.011 Score=37.90 Aligned_cols=88 Identities=18% Similarity=0.183 Sum_probs=46.5
Q ss_pred HHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCH
Q ss_conf 31479998898999987448884689999999899999999999999998999998716776678767999527866673
Q gi|254780827|r 17 VHSKFSSILSKKISNQLLSFDSPIDSTEIYKIYFPLSHLLLINVNSAKITCHQYNKFLNLKEESKIPFVVGITGSVAVGK 96 (311)
Q Consensus 17 ~~~~~~~~l~~~~~~~l~~~~d~i~~~ev~~iy~pl~~ll~~~~~~~~~~~~~~~~fl~~~~~~k~PfIIGIAG~~asGK 96 (311)
.|......+|-+++.+..++.....- +.-.|....+.-... ......||..--..|. =|-|+|++||||
T Consensus 105 IRk~~~~~~tl~dl~~~G~~~~~~~~----~~~~~~~~~l~~~~~-----~~~~~~fL~~aV~~r~--NilI~G~TgSGK 173 (332)
T PRK13900 105 IRKPSGMQLTLDDYEKMGAFDETATE----SLVDEDDVILNELLA-----EKKIKEFLEHAVISKK--NIIISGGTSTGK 173 (332)
T ss_pred EECCCCCCCCHHHHHHCCCCCHHHHH----CCCCHHHHHHHHHHH-----HHHHHHHHHHHHHCCC--CEEEECCCCCCH
T ss_conf 97888888999999864986655542----013415677887641-----0579999999986487--199988889889
Q ss_pred HHHHHHHHHHHHHCC-CCCEEEE
Q ss_conf 379999999997338-9868999
Q gi|254780827|r 97 STFARILCILLQQIS-NFKVSLI 118 (311)
Q Consensus 97 ST~Ar~L~~lL~~~~-~~~V~li 118 (311)
||+.+ .|+...| +.++..|
T Consensus 174 TTll~---aL~~~ip~~eRiitI 193 (332)
T PRK13900 174 TTFTN---AALREIPAIERLITV 193 (332)
T ss_pred HHHHH---HHHHCCCCCCCEEEE
T ss_conf 99999---998358953535663
No 194
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=96.41 E-value=0.0016 Score=43.73 Aligned_cols=24 Identities=38% Similarity=0.418 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
++||.|++||||||+++.+..++.
T Consensus 39 ~v~iiG~nGsGKSTL~r~l~gl~~ 62 (281)
T PRK13633 39 FLVILGHNGSGKSTIAKHMNALLL 62 (281)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999999849999999975887
No 195
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=96.41 E-value=0.011 Score=37.95 Aligned_cols=24 Identities=42% Similarity=0.531 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
++||.|++||||||+.++|.-|..
T Consensus 36 ~v~i~G~nGsGKSTll~~l~gl~~ 59 (648)
T PRK10535 36 MVAIVGASGSGKSTLMNILGCLDK 59 (648)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999999629999999956999
No 196
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.39 E-value=0.0016 Score=43.57 Aligned_cols=103 Identities=22% Similarity=0.299 Sum_probs=54.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CC-----------------CCEEEEEEC--CCCCCHHHHHH--HCHHHCCCCH
Q ss_conf 99952786667337999999999733-89-----------------868999508--87588268876--0002018981
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQI-SN-----------------FKVSLITTD--GFLFPNAVLTA--NNLMQRKGFP 142 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~-~~-----------------~~V~lis~D--gF~~~n~~l~~--~~l~~rkGfP 142 (311)
++||.|++||||||+++.|.-++..- +. .+|.+|.+| ..+....+.+. -++ ...|.|
T Consensus 35 ~vaivG~nGsGKSTL~k~l~Gl~~p~~G~I~i~G~~i~~~~~~~lr~~ig~VfQ~P~~~l~~~tV~e~iafgl-~~~g~~ 113 (279)
T PRK13635 35 WVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRKQIGMVFQNPDNQFVGTTVQDDVAFGL-ENIGVP 113 (279)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHEEEEECCHHHHCCCCHHHHHHHHHH-HHCCCC
T ss_conf 9999999996599999999728888896499999999857879997436688218565257626899998899-877999
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEE-------EECCCCEEEEEC
Q ss_conf 3312899999999741266405874044322565898369-------986896599706
Q gi|254780827|r 143 ESYDSNKLLTFLSDVKSGKKKVAVPRYSHSQYDILEGEYD-------TIIQPDILLIEG 194 (311)
Q Consensus 143 eS~D~~~L~~~L~~lK~G~~~V~~PvYsh~~~D~vp~~~~-------vi~~pdIIIvEG 194 (311)
..--.+...+.|..+.-. . .-++.-++-.-|+.+ ....|+|||+.=
T Consensus 114 ~~e~~~rv~~~l~~~gl~-~-----~~~~~p~~LSGGQrQRvaIAraL~~~P~iLilDE 166 (279)
T PRK13635 114 REEMVERVDQALRQVGME-D-----FLNREPHRLSGGQKQRVAIAGVLALQPDILILDE 166 (279)
T ss_pred HHHHHHHHHHHHHHCCCH-H-----HHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 999999999999877997-8-----8617934399999999999999970999899738
No 197
>pfam03205 MobB Molybdopterin guanine dinucleotide synthesis protein B. This protein contains a P-loop.
Probab=96.37 E-value=0.0076 Score=39.09 Aligned_cols=36 Identities=28% Similarity=0.432 Sum_probs=26.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEE-EEEEC
Q ss_conf 99952786667337999999999733898689-99508
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVS-LITTD 121 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~-lis~D 121 (311)
+|.|+|+..|||||+++.|...+.+.+ .++. ++-.|
T Consensus 2 ~v~i~G~~~sGKttl~~~L~~~~~~~g-~~~~~~~~~d 38 (122)
T pfam03205 2 IVLVVGPKDSGKTTLIRKLLNYLKRRG-YRVAVVKHLD 38 (122)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECC
T ss_conf 799994899989999999999999879-9448999899
No 198
>pfam04665 Pox_A32 Poxvirus A32 protein. The A32 protein is thought to be involved in viral DNA packaging.
Probab=96.36 E-value=0.0062 Score=39.66 Aligned_cols=49 Identities=29% Similarity=0.589 Sum_probs=34.7
Q ss_pred CCCCCEEEEEECCCCCCHHHHHH-HHHHHHHHCCCCCEEEEEE------CCCCCCHHH
Q ss_conf 67876799952786667337999-9999997338986899950------887588268
Q gi|254780827|r 79 ESKIPFVVGITGSVAVGKSTFAR-ILCILLQQISNFKVSLITT------DGFLFPNAV 129 (311)
Q Consensus 79 ~~k~PfIIGIAG~~asGKST~Ar-~L~~lL~~~~~~~V~lis~------DgF~~~n~~ 129 (311)
-.+.||=+.|.||+||||||.-. ++..+..++ .-+-++|- |||-+||-+
T Consensus 9 Ll~~pFrmaivGgSGSGKT~yLlsLf~tlv~ky--khIfLfTpv~N~~Yd~YVwPdHV 64 (241)
T pfam04665 9 LLAAPFRMAIVGGSGSGKTTYLLSLLRTLVRKF--KHIFLFTPVYNNAYDGYVWPDHI 64 (241)
T ss_pred HHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHH--EEEEEECCCCCCCCCCCCCCCCE
T ss_conf 740873599981588756699999999997741--58999624467323652577732
No 199
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.32 E-value=0.0042 Score=40.82 Aligned_cols=38 Identities=37% Similarity=0.329 Sum_probs=28.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 999527866673379999999997338986899950887
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGF 123 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF 123 (311)
||=++|=|||||||+|+.|..-|...+ .++.++-.|.+
T Consensus 1 ViW~tGLsgsGKTTlA~~l~~~L~~~~-~~~~~lDGD~i 38 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRG-RPVYVLDGDNV 38 (149)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCC-CCEEEECCHHH
T ss_conf 989879999999999999999999869-97599774889
No 200
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=96.32 E-value=0.0032 Score=41.62 Aligned_cols=24 Identities=33% Similarity=0.428 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
++||.|++||||||+.+.+.-++.
T Consensus 38 ~v~ivG~sGsGKSTLl~~i~Gl~~ 61 (228)
T PRK10584 38 TIALIGESGSGKSTLLAILAGLDD 61 (228)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999998589999999966999
No 201
>PRK06761 hypothetical protein; Provisional
Probab=96.30 E-value=0.0075 Score=39.10 Aligned_cols=35 Identities=34% Similarity=0.406 Sum_probs=27.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 999527866673379999999997338986899950
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITT 120 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~ 120 (311)
+|=|-|=+||||||+|+.|..+|...+ ..|.+..-
T Consensus 4 LIiIEGlPGsGKSTta~~l~d~L~~~g-~~v~~~~E 38 (281)
T PRK06761 4 LIIIEGLPGFGKSTTAHLLNDKLSQLK-IEVELFVE 38 (281)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-CCEEEEEE
T ss_conf 799966899980149999999998669-85389950
No 202
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter; InterPro: IPR005897 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family contains ABC-type bacteriocin transporter. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. Peptide bacteriocins are exported across the cytoplasmic membrane by a dedicated ATP-binding cassette (ABC) transporter. These ABC-transporters have an N-terminal peptidase domain that belong to MEROPS peptidase family C39 (clan CA); a central multi-pass transmembrane region and a C-terminal ABC transporter domain. These transporters have dual function: (i) they remove the N-terminal leader peptide from its bacteriocin precursor by cleavage at a Gly-Gly bond and (ii) transport the mature bacteriocin across the cytoplasmic membrane. This represents a novel strategy for secretion of bacterial proteins . Many bacteria are known to regulate diverse physiological processes through this system, such as bioluminescence, regulation of sporulation, virulence factor expression, antibiotics production, competence for genetic transformation, and activation of biofilm formation .; GO: 0008234 cysteine-type peptidase activity, 0019534 toxin transporter activity, 0006810 transport, 0016020 membrane.
Probab=96.30 E-value=0.0024 Score=42.46 Aligned_cols=38 Identities=26% Similarity=0.342 Sum_probs=25.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC--CCCEEEEEECCCCCC
Q ss_conf 999527866673379999999997338--986899950887588
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQIS--NFKVSLITTDGFLFP 126 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~--~~~V~lis~DgF~~~ 126 (311)
.+.|.|.|||||||+|++| -.|. .++=--|+.-|+-..
T Consensus 502 k~tiVGmSGSGKsTLaKLL----V~FfePQ~~sG~I~Lng~~l~ 541 (710)
T TIGR01193 502 KITIVGMSGSGKSTLAKLL----VGFFEPQAESGEILLNGISLK 541 (710)
T ss_pred EEEEECCCCCCHHHHHHHH----HCCCCCCCCCCEEEECCCCHH
T ss_conf 4899736797489999875----203589988773652782445
No 203
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.30 E-value=0.0018 Score=43.28 Aligned_cols=24 Identities=42% Similarity=0.634 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
++||.|++||||||+++.+.-++.
T Consensus 33 ~~~iiG~sGsGKSTLl~~i~Gl~~ 56 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGLLK 56 (228)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999999869999999972898
No 204
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE; InterPro: IPR014137 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase..
Probab=96.29 E-value=0.0023 Score=42.61 Aligned_cols=73 Identities=30% Similarity=0.327 Sum_probs=40.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHH--------------HHHC-------CCCCEEEEEECCCCCCHHHHH-----HHCHHHC
Q ss_conf 9995278666733799999999--------------9733-------898689995088758826887-----6000201
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCIL--------------LQQI-------SNFKVSLITTDGFLFPNAVLT-----ANNLMQR 138 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~l--------------L~~~-------~~~~V~lis~DgF~~~n~~l~-----~~~l~~r 138 (311)
-||.=|.|||||||+||+|--| |.+. ....|++|=+|.+==-|.... .+.+.+-
T Consensus 40 ~~gLLG~SG~GKSTLArlLlGLe~P~~G~v~F~G~dl~~L~~~~~rafrR~vQlvFQD~~savNPr~tv~~ii~EPLrhl 119 (267)
T TIGR02769 40 TVGLLGRSGCGKSTLARLLLGLEKPAQGEVSFRGQDLSKLDRKQRRAFRRDVQLVFQDSPSAVNPRKTVREIIGEPLRHL 119 (267)
T ss_pred EEEECCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCHHHCCHHHCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 05523678873778999987507888740476256455508110211121367898747431162578999986257766
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q ss_conf 8981331289999999974
Q gi|254780827|r 139 KGFPESYDSNKLLTFLSDV 157 (311)
Q Consensus 139 kGfPeS~D~~~L~~~L~~l 157 (311)
...-+|--.+...+.|..+
T Consensus 120 ~~L~~s~~~~r~~~LL~~v 138 (267)
T TIGR02769 120 TSLDESERKARIAELLELV 138 (267)
T ss_pred HHHHHHHHHHHHHHHHHHC
T ss_conf 5488999999999999860
No 205
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.29 E-value=0.0022 Score=42.70 Aligned_cols=24 Identities=46% Similarity=0.524 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
++||.|++||||||+++.|.-++.
T Consensus 30 ~vaiiG~nGsGKSTL~~~l~Gll~ 53 (274)
T PRK13644 30 YIGIIGKNGSGKSTLALHLNGLLR 53 (274)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999999809999999970685
No 206
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.29 E-value=0.0049 Score=40.36 Aligned_cols=46 Identities=26% Similarity=0.226 Sum_probs=30.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHH
Q ss_conf 99952786667337999999999733898689995088758826887
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLT 131 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~ 131 (311)
+++|.|+|||||||+-.++..+.+. ....|.+-..|-...+...+.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~p-t~G~v~i~g~~~~~l~~~~~~ 78 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDKP-TSGEVLINGKDLTKLSEKELA 78 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC-CCCEEEECCEECCCCCHHHHH
T ss_conf 9999899999899999999646678-884699998886758988999
No 207
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein; InterPro: IPR005670 This is a family of phosphate transport system permease proteins.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0015114 phosphate transmembrane transporter activity, 0006817 phosphate transport, 0016020 membrane.
Probab=96.28 E-value=0.008 Score=38.92 Aligned_cols=38 Identities=26% Similarity=0.427 Sum_probs=28.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEE-EEEECC
Q ss_conf 99952786667337999999999733898689-995088
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVS-LITTDG 122 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~-lis~Dg 122 (311)
|-++=|||||||||+=|-|-.+-...++.+++ -|..||
T Consensus 29 vTAlIGPSGCGKSTlLR~lNRMnDl~~~~r~~G~v~f~G 67 (248)
T TIGR00972 29 VTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDG 67 (248)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEECC
T ss_conf 589877889867899999887764078816888898645
No 208
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.26 E-value=0.0037 Score=41.20 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=22.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 9995278666733799999999973
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQ 109 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~ 109 (311)
++||.|++||||||+++.|.-++..
T Consensus 35 ~~aiiG~nGsGKSTLl~~l~GLl~p 59 (286)
T PRK13646 35 YYAIVGQTGSGKSTLIQNINALLKP 59 (286)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 9999999998199999999707888
No 209
>KOG3062 consensus
Probab=96.26 E-value=0.082 Score=32.06 Aligned_cols=117 Identities=18% Similarity=0.199 Sum_probs=57.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCC-CEEEEEECCCCCCHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 99952786667337999999999733898-68999508875882688760002018981331289999999974126640
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNF-KVSLITTDGFLFPNAVLTANNLMQRKGFPESYDSNKLLTFLSDVKSGKKK 163 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~-~V~lis~DgF~~~n~~l~~~~l~~rkGfPeS~D~~~L~~~L~~lK~G~~~ 163 (311)
+|-|+|=++|||||-|+.|+..|+.-+.. .|.++.--++... .+-..-+|-+-..+-. +|++.
T Consensus 3 LVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~deslg~~----------~ns~y~~s~~EK~lRg---~L~S~--- 66 (281)
T KOG3062 3 LVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDESLGIE----------KNSNYGDSQAEKALRG---KLRSA--- 66 (281)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECHHHCCCC----------CCCCCCCCHHHHHHHH---HHHHH---
T ss_conf 6999378888820679999999986255514999541321788----------7422244577888899---89999---
Q ss_pred EEEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEEC--CCCCEEEEEECCHHHHHHHHHHH
Q ss_conf 587404432256589836998689659970610035765457577740100--02311577308899988799887
Q gi|254780827|r 164 VAVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMIS--DFLDFSIYIDADKRDIHRWYLNR 237 (311)
Q Consensus 164 V~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vs--D~fD~sIyVDad~~~i~~wyi~R 237 (311)
| ...+.+.||+|+.-+|..-.=+ .+.++..+ ----..||.++|.+.+++|--+|
T Consensus 67 v----------------~R~Lsk~~iVI~DslNyIKGfR----YeLyC~ak~~~tt~Cvv~t~vp~e~~r~~Ns~~ 122 (281)
T KOG3062 67 V----------------DRSLSKGDIVIVDSLNYIKGFR----YELYCEAKAARTTYCVVHTAVPQELCREWNSER 122 (281)
T ss_pred H----------------HHHCCCCCEEEEECCCCCCCCE----EEEEEEHHCCCEEEEEEEECCCHHHHHHHCCCC
T ss_conf 9----------------8533568689981444112202----036551010544689998527989998751468
No 210
>KOG0058 consensus
Probab=96.25 E-value=0.0055 Score=40.01 Aligned_cols=36 Identities=33% Similarity=0.421 Sum_probs=26.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 9995278666733799999999973389868999508875
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFL 124 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~ 124 (311)
++++.|++|+||||+|.+|+ ++.++.---|..||-=
T Consensus 496 ~vALVGPSGsGKSTiasLL~----rfY~PtsG~IllDG~~ 531 (716)
T KOG0058 496 VVALVGPSGSGKSTIASLLL----RFYDPTSGRILLDGVP 531 (716)
T ss_pred EEEEECCCCCCHHHHHHHHH----HHCCCCCCEEEECCEE
T ss_conf 79998899988899999999----7368888738778834
No 211
>TIGR02881 spore_V_K stage V sporulation protein K; InterPro: IPR014232 Proteins in this entry include the stage V sporulation protein K (SpoVK), a close homologue of the Rubisco expression protein CbbX (IPR000470 from INTERPRO), and are members of an ATPase family associated with various cellular activities. These proteins are strictly limited to bacterial endospore-forming species, but are not found universally among members of this group; they are missing from the Clostridium species..
Probab=96.24 E-value=0.018 Score=36.55 Aligned_cols=69 Identities=26% Similarity=0.384 Sum_probs=40.6
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 89999874488846899999998999999999999999989999987167766787679995278666733799999999
Q gi|254780827|r 27 KKISNQLLSFDSPIDSTEIYKIYFPLSHLLLINVNSAKITCHQYNKFLNLKEESKIPFVVGITGSVAVGKSTFARILCIL 106 (311)
Q Consensus 27 ~~~~~~l~~~~d~i~~~ev~~iy~pl~~ll~~~~~~~~~~~~~~~~fl~~~~~~k~PfIIGIAG~~asGKST~Ar~L~~l 106 (311)
..|+.++-||.+- -+-|.|||. ++.++.... .. |.+.. |.-.=.==-|-||.||||+||+|-.|
T Consensus 2 ~~EL~~~vGL~~v--K~~i~EiYA----~i~i~~kR~-------~~--GLk~~-~~~LHMiFKGNPGTGKTTVAR~~gkl 65 (261)
T TIGR02881 2 ERELSRLVGLDEV--KELIKEIYA----WIQINEKRK-------EE--GLKTS-KQVLHMIFKGNPGTGKTTVARLLGKL 65 (261)
T ss_pred HHHHHHCCCHHHH--HHHHHHHHH----HHHHHHHHH-------HH--HHCCC-CCEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 1235640488899--999999999----999988887-------51--01148-84478774278668438999999999
Q ss_pred HHHCC
Q ss_conf 97338
Q gi|254780827|r 107 LQQIS 111 (311)
Q Consensus 107 L~~~~ 111 (311)
+...+
T Consensus 66 f~emn 70 (261)
T TIGR02881 66 FKEMN 70 (261)
T ss_pred HHHCC
T ss_conf 85337
No 212
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=96.24 E-value=0.0037 Score=41.23 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
++||.|++||||||+++.|.-++.
T Consensus 35 ~v~IiG~nGsGKSTL~k~l~Gll~ 58 (304)
T PRK13651 35 FIAIIGQTGSGKTTFIEHLNALLL 58 (304)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999987999859999999966999
No 213
>TIGR01192 chvA glucan exporter ATP-binding protein; InterPro: IPR005896 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family contains glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. In general, this protein is in some ways implicated in osmo-regulation and is suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bacterial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmo-adaptaion are related. ; GO: 0005215 transporter activity, 0006810 transport.
Probab=96.23 E-value=0.0047 Score=40.51 Aligned_cols=107 Identities=24% Similarity=0.304 Sum_probs=62.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC---HHHH--------HHHCHHHCC-------CCHHHH
Q ss_conf 7999527866673379999999997338986899950887588---2688--------760002018-------981331
Q gi|254780827|r 84 FVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFP---NAVL--------TANNLMQRK-------GFPESY 145 (311)
Q Consensus 84 fIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~---n~~l--------~~~~l~~rk-------GfPeS~ 145 (311)
=-|+|.||+|+||||+-. ||+|-.+|++--|+.||---. ..-| +.-|+++|- |--++-
T Consensus 362 ~TvAIVGPTGAGKTTLiN----LLQRVydP~~G~I~IDG~~I~~v~r~SLR~s~ATVFQDAGL~~R~Ir~NI~lG~~~At 437 (592)
T TIGR01192 362 QTVAIVGPTGAGKTTLIN----LLQRVYDPKVGQILIDGIDINTVTRESLRKSIATVFQDAGLLNRSIRENIRLGREGAT 437 (592)
T ss_pred CEEEEECCCCCCHHHHHH----HHHHHCCCCCCEEEECCEEHHHHCHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCC
T ss_conf 568987789971789988----7753106986548872424001034778878877873102001312332003777787
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCCC---CCC-CEE-------EECCCCEEEEEC
Q ss_conf 2899999999741266405874044322565---898-369-------986896599706
Q gi|254780827|r 146 DSNKLLTFLSDVKSGKKKVAVPRYSHSQYDI---LEG-EYD-------TIIQPDILLIEG 194 (311)
Q Consensus 146 D~~~L~~~L~~lK~G~~~V~~PvYsh~~~D~---vp~-~~~-------vi~~pdIIIvEG 194 (311)
|-|.+..--.+--..==.-..--|+-..+.| ..| |.+ +.+..+|||+.-
T Consensus 438 ~~E~~~Aa~aAaA~DFI~~~~~~Y~T~VGERG~~LSGGERQR~AIARAILKNAPILvLDE 497 (592)
T TIGR01192 438 DEEVVEAAKAAAASDFIEKRLNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDE 497 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEECC
T ss_conf 789999997543667788641344400114677477723789999999972388465200
No 214
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=96.23 E-value=0.0057 Score=39.93 Aligned_cols=68 Identities=25% Similarity=0.310 Sum_probs=41.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC----------CCHHH-HH--HHCHHHCCCCHHHHHHHH
Q ss_conf 679995278666733799999999973389868999508875----------88268-87--600020189813312899
Q gi|254780827|r 83 PFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFL----------FPNAV-LT--ANNLMQRKGFPESYDSNK 149 (311)
Q Consensus 83 PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~----------~~n~~-l~--~~~l~~rkGfPeS~D~~~ 149 (311)
|=||-|+|++|||||.+|-.|...+ +..+|+.|+.- .|..+ ++ .+.+.+-..--+.|+...
T Consensus 4 ~~ii~i~GpTasGKs~la~~la~~~------~~eIIsaDS~QvYk~l~IgTakps~~e~~~i~Hhli~~~~~~e~~sv~~ 77 (304)
T PRK00091 4 PKLIVLVGPTASGKTALAIELAKRL------NGEIISVDSMQVYRGMDIGTAKPTAEELAGVPHHLIDILDPTESYSAAD 77 (304)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHC------CCEEEEECHHHHHCCCCEEECCCCHHHHCCCCCEEEEEECCCCCEEHHH
T ss_conf 9779998988658999999999987------9989941268874999868899999998189812434565887544999
Q ss_pred HHHHHHH
Q ss_conf 9999997
Q gi|254780827|r 150 LLTFLSD 156 (311)
Q Consensus 150 L~~~L~~ 156 (311)
+.+....
T Consensus 78 f~~~a~~ 84 (304)
T PRK00091 78 FQRDALA 84 (304)
T ss_pred HHHHHHH
T ss_conf 9999999
No 215
>pfam00406 ADK Adenylate kinase.
Probab=96.22 E-value=0.025 Score=35.54 Aligned_cols=114 Identities=21% Similarity=0.235 Sum_probs=55.3
Q ss_pred EECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHH----HH--HHHCHHHCCC--CHHHHHHHHHHHHHHHHHC
Q ss_conf 52786667337999999999733898689995088758826----88--7600020189--8133128999999997412
Q gi|254780827|r 88 ITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNA----VL--TANNLMQRKG--FPESYDSNKLLTFLSDVKS 159 (311)
Q Consensus 88 IAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~----~l--~~~~l~~rkG--fPeS~D~~~L~~~L~~lK~ 159 (311)
|-|++||||+|.|+.|..- + .+..||+-+.+.... .+ .-+..+. .| .|+..=..++.+.|...
T Consensus 1 i~G~PGsGKgTqa~~La~~---~---~~~~is~GdllR~~~~~~s~~g~~i~~~i~-~G~lvpd~i~~~l~~~~l~~~-- 71 (186)
T pfam00406 1 LLGPPGAGKGTQAERIVQK---Y---GIVHLSTGDLLRAEVKSGTELGKEAKEYMD-KGELVPDEVVVGLVKERLEQN-- 71 (186)
T ss_pred CCCCCCCCHHHHHHHHHHH---H---CCEEECHHHHHHHHHHCCCHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHCCC--
T ss_conf 9188989859999999998---5---990676999999998628879999999998-699543099999999997074--
Q ss_pred CCCEEEEECCCCCCCCCCCCCEEEECCCCEEEEECC--HHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHHHHHHHHHH
Q ss_conf 664058740443225658983699868965997061--003576545757774010002311577308899988799887
Q gi|254780827|r 160 GKKKVAVPRYSHSQYDILEGEYDTIIQPDILLIEGI--NVLQQNSLSDNQKATPMISDFLDFSIYIDADKRDIHRWYLNR 237 (311)
Q Consensus 160 G~~~V~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi--~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~i~~wyi~R 237 (311)
....=+|++|. ++-|...+- . .....--.|.-|+++++++.+.+|...|
T Consensus 72 -------------------------~~~~g~iLDGfPRt~~Qa~~l~---~-~l~~~~~~~~Vi~l~~~~~~~~~Rl~~R 122 (186)
T pfam00406 72 -------------------------DCKNGFLLDGFPRTVPQAEALE---E-MLEYGIKLDYVIEFDVPDEVLVERLTGR 122 (186)
T ss_pred -------------------------CCCCCEEEECCCCCHHHHHHHH---H-HHHCCCCCCEEEEEECCHHHHHHHHHCC
T ss_conf -------------------------5548668737989899999999---9-9974998777999973789999999766
Q ss_pred HH
Q ss_conf 88
Q gi|254780827|r 238 FL 239 (311)
Q Consensus 238 f~ 239 (311)
..
T Consensus 123 ~~ 124 (186)
T pfam00406 123 RI 124 (186)
T ss_pred CC
T ss_conf 41
No 216
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=96.22 E-value=0.016 Score=36.92 Aligned_cols=71 Identities=23% Similarity=0.325 Sum_probs=45.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC----------CCH-HHHH--HHCHHHCCCCHHHHHHH
Q ss_conf 7679995278666733799999999973389868999508875----------882-6887--60002018981331289
Q gi|254780827|r 82 IPFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFL----------FPN-AVLT--ANNLMQRKGFPESYDSN 148 (311)
Q Consensus 82 ~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~----------~~n-~~l~--~~~l~~rkGfPeS~D~~ 148 (311)
.|.+|-|+|++|||||-+|-.|. +++ ...+||.|+.- +|. ++++ .+-+++-.+.-|+|+..
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LA---k~~---~~eIIs~DSmQvYr~mdIGTAKps~~e~~~vpHhliDi~~p~e~ysa~ 75 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALA---KRL---GGEIISLDSMQVYRGLDIGTAKPSLEELAGVPHHLIDIRDPTESYSAA 75 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH---HHC---CCCEEECCHHHHCCCCCCCCCCCCHHHHCCCCEEEECCCCCCCCCCHH
T ss_conf 96379998988757789999999---982---992893023553188863079999999858997875456832255499
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999741
Q gi|254780827|r 149 KLLTFLSDVK 158 (311)
Q Consensus 149 ~L~~~L~~lK 158 (311)
.+.+...+.-
T Consensus 76 ~f~~~a~~~i 85 (308)
T COG0324 76 EFQRDALAAI 85 (308)
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 217
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=96.21 E-value=0.005 Score=40.28 Aligned_cols=27 Identities=33% Similarity=0.413 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 999527866673379999999997338
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQIS 111 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~ 111 (311)
=|-|||++|+||||||..|.+-+...+
T Consensus 265 GILIAG~PGaGKsTFaqAlAefy~~~G 291 (604)
T COG1855 265 GILIAGAPGAGKSTFAQALAEFYASQG 291 (604)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 469956999974689999999998669
No 218
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.21 E-value=0.0048 Score=40.40 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
++||.|++||||||+++.|.-++.
T Consensus 37 ~vaiiG~sGsGKSTLl~ll~Gl~~ 60 (269)
T PRK13648 37 WTSIVGHNGSGKSTIAKLMIGIEK 60 (269)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999999999979999999964979
No 219
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.21 E-value=0.0036 Score=41.24 Aligned_cols=23 Identities=39% Similarity=0.453 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 99952786667337999999999
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILL 107 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL 107 (311)
++||.|++||||||+.+.+.-++
T Consensus 37 ~v~iiG~sGsGKSTLl~~i~Gl~ 59 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999940999999996699
No 220
>PRK13808 adenylate kinase; Provisional
Probab=96.20 E-value=0.037 Score=34.41 Aligned_cols=137 Identities=18% Similarity=0.217 Sum_probs=77.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHH----H--HHHHCHHHCCC-CHHHHHHHHHHHHHHHHH
Q ss_conf 9952786667337999999999733898689995088758826----8--87600020189-813312899999999741
Q gi|254780827|r 86 VGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNA----V--LTANNLMQRKG-FPESYDSNKLLTFLSDVK 158 (311)
Q Consensus 86 IGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~----~--l~~~~l~~rkG-fPeS~D~~~L~~~L~~lK 158 (311)
|-+-|++||||+|-|..|..-+ .+..|||-+-+...- . ++.+.+|++-+ .|+.+=++++.+-|...-
T Consensus 3 IIlLGPPGsGKGTQA~~L~~~~------gi~hISTGDmLR~aI~~~T~LG~kaK~im~~G~LVPDeIVi~lI~erL~~~d 76 (297)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQY------GIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPD 76 (297)
T ss_pred EEEECCCCCCHHHHHHHHHHHH------CCCEECHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 9997899998589999999986------9886758699999997599879999999976698888999999999966856
Q ss_pred CCCCEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHHHHHHHHHHH
Q ss_conf 26640587404432256589836998689659970610035765457577740100023115773088999887998878
Q gi|254780827|r 159 SGKKKVAVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADKRDIHRWYLNRF 238 (311)
Q Consensus 159 ~G~~~V~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~i~~wyi~Rf 238 (311)
..+. .-. | |-..++.+. |.|--+..... --+|.-|++++|++.+..|...|.
T Consensus 77 ~~~G-fIL--------D---GFPRTv~QA-----EaLD~~L~~~g-----------~~LD~VIel~Vdd~~Lv~RI~~R~ 128 (297)
T PRK13808 77 AANG-FIL--------D---GFPRTVPQA-----EALDALLKDKQ-----------LKLDAVVELRVNEGALLARVETRV 128 (297)
T ss_pred CCCC-EEE--------E---CCCCCHHHH-----HHHHHHHHHCC-----------CCCCEEEEEECCHHHHHHHHHHHH
T ss_conf 6789-872--------2---899998999-----99999998189-----------997868997678899999999888
Q ss_pred HHHHH-----HHCCCHHHHHHHH
Q ss_conf 88766-----5201677799886
Q gi|254780827|r 239 LKLRE-----TAFLNPRSYFHHF 256 (311)
Q Consensus 239 ~~lr~-----~a~~~~~s~~~~y 256 (311)
-.-+. ++-.+|+.+-+|+
T Consensus 129 ~e~~a~Ge~~R~DDn~E~~~kRL 151 (297)
T PRK13808 129 AEMRARGEEVRADDTPEVLAKRL 151 (297)
T ss_pred HHHHHCCCCCCCCCCHHHHHHHH
T ss_conf 87761488788899999999999
No 221
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.20 E-value=0.026 Score=35.45 Aligned_cols=110 Identities=13% Similarity=0.188 Sum_probs=60.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCHHHCCCC---------HHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997338986899950887588268876000201898---------13312899999999
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTANNLMQRKGF---------PESYDSNKLLTFLS 155 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~~~l~~rkGf---------PeS~D~~~L~~~L~ 155 (311)
++-|+|.+|+||||++.-+..-+....+.+|..+|.. .+..++-.|=+...-|. -..-+++.+.+...
T Consensus 15 L~vi~a~~g~GKS~~~~~la~~~a~~~g~~V~~~SlE---m~~~~~~~R~~s~~~~i~~~~i~~~~~~~~~~~~~~~~~~ 91 (242)
T cd00984 15 LIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLE---MSKEQLLQRLLASESGISLSKLRTGSLSDEDWERLAEAIG 91 (242)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECC---CCHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 8999968999999999999999999779959999333---5388999999999829774553026522799999999999
Q ss_pred HHHCCCCEEEEECCCCCCCCC--CCCC---EEEECCCCEEEEECCHHCCCC
Q ss_conf 741266405874044322565--8983---699868965997061003576
Q gi|254780827|r 156 DVKSGKKKVAVPRYSHSQYDI--LEGE---YDTIIQPDILLIEGINVLQQN 201 (311)
Q Consensus 156 ~lK~G~~~V~~PvYsh~~~D~--vp~~---~~vi~~pdIIIvEGi~vL~~~ 201 (311)
.++.. .+ -+|++..-++ +... ......+|+|||.-+..+..+
T Consensus 92 ~~~~~--~l--~i~d~~~~t~~~i~~~ir~~~~~~~~~~vvvDylql~~~~ 138 (242)
T cd00984 92 ELKEL--PI--YIDDSSSLTVSDIRSRARRLKKEHGLGLIVIDYLQLMSGS 138 (242)
T ss_pred HHCCC--CE--EEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCC
T ss_conf 86169--88--9966999999999999999988369989998269854677
No 222
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.19 E-value=0.0053 Score=40.14 Aligned_cols=24 Identities=38% Similarity=0.398 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
.++|.|++||||||+.+.|.-++.
T Consensus 29 ~v~i~G~sGsGKSTLl~~l~Gl~~ 52 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred EEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 999995899988999999869876
No 223
>pfam03215 Rad17 Rad17 cell cycle checkpoint protein.
Probab=96.19 E-value=0.044 Score=33.89 Aligned_cols=34 Identities=29% Similarity=0.482 Sum_probs=25.3
Q ss_pred HHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 98716776678767999527866673379999999997
Q gi|254780827|r 71 NKFLNLKEESKIPFVVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 71 ~~fl~~~~~~k~PfIIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
..|.+ +.. +. |.=+.|++||||||+.++|..-|.
T Consensus 37 ~~~~~-~~~-~~--iLlLtGPaG~GKTTTI~lLAkeLG 70 (490)
T pfam03215 37 AVFLE-SNK-QL--ILLLTGPSGCGKSTTVKVLSKELG 70 (490)
T ss_pred HHHCC-CCC-CE--EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 98547-777-31--899879899889999999999759
No 224
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.19 E-value=0.0047 Score=40.47 Aligned_cols=36 Identities=28% Similarity=0.405 Sum_probs=29.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 9995278666733799999999973389868999508875
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFL 124 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~ 124 (311)
||=..|++.|||||+|+.||.++.. +. -.+++|.|.
T Consensus 4 II~LNG~SSSGKSsiAraLQ~~l~~---p~-~h~~vD~f~ 39 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSVLAE---PW-LHFGVDSFI 39 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC---CE-EEEEHHHHH
T ss_conf 9998689989889999999984767---56-884185898
No 225
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.18 E-value=0.0021 Score=42.84 Aligned_cols=103 Identities=18% Similarity=0.269 Sum_probs=52.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC------------------CCEEEEEECCC--CCCHHHHHH--HCHHHCCCCH
Q ss_conf 9995278666733799999999973389------------------86899950887--588268876--0002018981
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISN------------------FKVSLITTDGF--LFPNAVLTA--NNLMQRKGFP 142 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~------------------~~V~lis~DgF--~~~n~~l~~--~~l~~rkGfP 142 (311)
++||.|.+||||||+++.|.-++....+ .+|..|-+|-+ +....+.++ .++ ..+|+|
T Consensus 35 ~~aiiG~sGsGKSTL~~~l~Gl~~~~~G~I~~~G~~i~~~~~~~~r~~ig~VfQ~p~~~l~~~tV~e~i~~g~-~~~~~~ 113 (277)
T PRK13642 35 WVSIIGQNGSGKSTTARLIDGLFEEFEGIVKIDGERLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGM-ENQGIP 113 (277)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHH-HHCCCC
T ss_conf 9999999996899999999638998884899999999857888885176899989763257550888898777-666999
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEE-------EECCCCEEEEEC
Q ss_conf 3312899999999741266405874044322565898369-------986896599706
Q gi|254780827|r 143 ESYDSNKLLTFLSDVKSGKKKVAVPRYSHSQYDILEGEYD-------TIIQPDILLIEG 194 (311)
Q Consensus 143 eS~D~~~L~~~L~~lK~G~~~V~~PvYsh~~~D~vp~~~~-------vi~~pdIIIvEG 194 (311)
..--.+...+.|..+.- . +.-++.-+.-.-|+.+ ....|+|||+.=
T Consensus 114 ~~e~~~~v~~~l~~~~l--~----~~~~~~P~~LSGGqrQRvaIA~aLa~~P~ililDE 166 (277)
T PRK13642 114 REEMIKRVDEALLAVNM--L----DFKTREPARLSGGQKQRVAVAGIIALRPEIIILDE 166 (277)
T ss_pred HHHHHHHHHHHHHHCCC--H----HHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 99999999999987799--6----56557912289999999999999966999999958
No 226
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=96.18 E-value=0.003 Score=41.82 Aligned_cols=23 Identities=35% Similarity=0.640 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 99952786667337999999999
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILL 107 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL 107 (311)
++||.|.|||||||+++.|..++
T Consensus 43 ~lgiVGeSGsGKSTL~~~l~gl~ 65 (327)
T PRK11308 43 TLAVVGESGCGKSTLARLLTMIE 65 (327)
T ss_pred EEEEECCCCHHHHHHHHHHHCCC
T ss_conf 99999998319999999995699
No 227
>PRK13976 thymidylate kinase; Provisional
Probab=96.17 E-value=0.071 Score=32.51 Aligned_cols=129 Identities=23% Similarity=0.291 Sum_probs=64.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCCCEEEEEECCCCCCHHHHHHHCHHHCCCC-HHH-------HHHHHHHHH-H
Q ss_conf 99952786667337999999999733-8986899950887588268876000201898-133-------128999999-9
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQI-SNFKVSLITTDGFLFPNAVLTANNLMQRKGF-PES-------YDSNKLLTF-L 154 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~-~~~~V~lis~DgF~~~n~~l~~~~l~~rkGf-PeS-------~D~~~L~~~-L 154 (311)
.|-+-|.-||||||.++.|..-|++. +..+|.+....|- -+-.+.-+.-+...... |.| -..+.+.+. .
T Consensus 2 fIvfEGiDGsGKsTq~~~L~~~L~~~~~~~~~~~trEPgg-t~~ge~IR~~ll~~~~~~~~te~lLf~A~R~eh~~~~I~ 80 (202)
T PRK13976 2 FITFEGIDGSGKTTQSRLLAEYLSQIYGENNVVLTREPGG-TSFNESVRGLLLSTKNLDKLSELLLFIAMRREHFVKVIL 80 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCC-CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999899999899999999999986069986898379999-827899999971655799699999999999999999988
Q ss_pred HHHHCCCCEEEEECCCCCCCCCCCCCEEEE-CCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHHHHHH
Q ss_conf 974126640587404432256589836998-6896599706100357654575777401000231157730889998879
Q gi|254780827|r 155 SDVKSGKKKVAVPRYSHSQYDILEGEYDTI-IQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADKRDIHRW 233 (311)
Q Consensus 155 ~~lK~G~~~V~~PvYsh~~~D~vp~~~~vi-~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~i~~w 233 (311)
-+|++|+ .|-.=.|.+.+.- ++-. ..-+.=.+.-+|-+... + .=|+.||+|.|.+.-.+|
T Consensus 81 PaL~~g~-~VI~DRy~~St~A-----YQg~~~gl~~~~i~~l~~~~~~-~------------~PDlt~~Ldi~~e~al~R 141 (202)
T PRK13976 81 PALTQGK-IVICDRFIDSTIA-----YQGYGCGIDLKLIRDLNDLVVD-I------------YPDITFILDIDINQSLSR 141 (202)
T ss_pred HHHHCCC-EEEECCCCCHHHH-----HHCCCCCCCHHHHHHHHHHHCC-C------------CCCEEEEEECCHHHHHHC
T ss_conf 8886699-8997485355788-----7322679899999999998407-8------------988799983788999752
No 228
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.17 E-value=0.013 Score=37.52 Aligned_cols=104 Identities=18% Similarity=0.311 Sum_probs=57.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--------------CC--CCCEEEEEECCCCCCH-HHHHHHC-HHHCCCCHHHHH
Q ss_conf 9995278666733799999999973--------------38--9868999508875882-6887600-020189813312
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQ--------------IS--NFKVSLITTDGFLFPN-AVLTANN-LMQRKGFPESYD 146 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~--------------~~--~~~V~lis~DgF~~~n-~~l~~~~-l~~rkGfPeS~D 146 (311)
|+||.|++||||||+.+.|.-++.. .+ ..++..+.+|.-++|+ .+.+.-- .....|.+..-.
T Consensus 28 i~~iiGpnGaGKSTl~~~i~Gl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~ 107 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEI 107 (213)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHH
T ss_conf 99999999973999999997599989708999999988899778786999069865889819999988998759998999
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC-------EEEECCCCEEEEEC
Q ss_conf 8999999997412664058740443225658983-------69986896599706
Q gi|254780827|r 147 SNKLLTFLSDVKSGKKKVAVPRYSHSQYDILEGE-------YDTIIQPDILLIEG 194 (311)
Q Consensus 147 ~~~L~~~L~~lK~G~~~V~~PvYsh~~~D~vp~~-------~~vi~~pdIIIvEG 194 (311)
.+...+.+..+.-. +.-++..++-.-|+ ...+..|+|||+.-
T Consensus 108 ~~~~~~~l~~~~l~------~~~~~~~~~LSGG~kQrv~iAraL~~~P~illlDE 156 (213)
T cd03259 108 RARVRELLELVGLE------GLLNRYPHELSGGQQQRVALARALAREPSLLLLDE 156 (213)
T ss_pred HHHHHHHHHHCCCH------HHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 99999999986996------47637703389899999999876227999999839
No 229
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=96.16 E-value=0.0029 Score=41.91 Aligned_cols=168 Identities=21% Similarity=0.303 Sum_probs=82.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CC----CCEEEEEECCCCCCHHH-HHH---HCHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 99952786667337999999999733-89----86899950887588268-876---00020189813312899999999
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQI-SN----FKVSLITTDGFLFPNAV-LTA---NNLMQRKGFPESYDSNKLLTFLS 155 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~-~~----~~V~lis~DgF~~~n~~-l~~---~~l~~rkGfPeS~D~~~L~~~L~ 155 (311)
++||-|.-||||||+.++|.-++..- +. .++.++....-+.|+-. ++. .+++ .|++...--+. ...+.
T Consensus 52 ~vGIIG~NGAGKSTLLKiIaGI~~PTsG~V~V~Gk~sLL~lgaGf~~eLTGrENI~L~g~~--lGlsk~eI~~~-~deIi 128 (549)
T PRK13545 52 IVGIVGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLM--MGITKEKIKEI-IPEII 128 (549)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHH--HCCCHHHHHHH-HHHHH
T ss_conf 9999889999899999999689889860899946898774055769776299999988998--49899999998-99999
Q ss_pred HHHCCCCEEEEEC--CCCCCCCCCCCCEEEECCCCEEEE-ECCHHCCCC----------CCCCCCCCCE-------EECC
Q ss_conf 7412664058740--443225658983699868965997-061003576----------5457577740-------1000
Q gi|254780827|r 156 DVKSGKKKVAVPR--YSHSQYDILEGEYDTIIQPDILLI-EGINVLQQN----------SLSDNQKATP-------MISD 215 (311)
Q Consensus 156 ~lK~G~~~V~~Pv--Ysh~~~D~vp~~~~vi~~pdIIIv-EGi~vL~~~----------~l~~~~~~~~-------~vsD 215 (311)
++-.-..-+..|+ ||--...|+.=..-+.-.|||+|+ |.+-|.-.. ........-+ .|.+
T Consensus 129 EFAELGdFid~PVKtYSSGMkaRLgFAIA~~~dPDILIIDEaLSVGD~~F~~Kc~~rm~ef~e~gkTIvfVSHsl~~Vk~ 208 (549)
T PRK13545 129 DFADIGKFMYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKS 208 (549)
T ss_pred HHHCHHHHHHCHHHHHCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHH
T ss_conf 98567888738263408868999999999824999999946200578999999999999999789889999588899998
Q ss_pred CCCEEEEEEC-------CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 2311577308-------899988799887888766520167779988605998999999999
Q gi|254780827|r 216 FLDFSIYIDA-------DKRDIHRWYLNRFLKLRETAFLNPRSYFHHFTEISEEQSLKIAET 270 (311)
Q Consensus 216 ~fD~sIyVDa-------d~~~i~~wyi~Rf~~lr~~a~~~~~s~~~~y~~l~~~ea~~~a~~ 270 (311)
+||-.||++- |.+.+...| +.|...|.+|+.+|-..+-..
T Consensus 209 ~C~R~iWLe~G~vr~~G~~~eVv~~Y---------------e~Flk~~~~~sk~e~~~~~~e 255 (549)
T PRK13545 209 FCTKALWLHYGQVKEYGDIKEIVDHY---------------DEFLKKYNQMSVEERKDLRKE 255 (549)
T ss_pred HCCEEEEEECCEEEEECCHHHHHHHH---------------HHHHHHHHHCCHHHHHHHHHH
T ss_conf 57310634386678748888999999---------------999999873399999999999
No 230
>pfam03266 DUF265 Protein of unknown function, DUF265.
Probab=96.16 E-value=0.0047 Score=40.49 Aligned_cols=33 Identities=33% Similarity=0.529 Sum_probs=24.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 995278666733799999999973389868999508875
Q gi|254780827|r 86 VGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFL 124 (311)
Q Consensus 86 IGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~ 124 (311)
|.|+|.+|+||||+.+.+...|+..+ ++..||+
T Consensus 2 i~ITG~pGvGKTTli~kv~~~l~~~~------~~v~GF~ 34 (168)
T pfam03266 2 IFITGPPGVGKTTLVKKVIELLKSEG------VKVGGFY 34 (168)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC------CEEEEEE
T ss_conf 89978999889999999999998679------7074899
No 231
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=96.15 E-value=0.011 Score=37.94 Aligned_cols=39 Identities=23% Similarity=0.360 Sum_probs=28.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 6799952786667337999999999733898689995088
Q gi|254780827|r 83 PFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDG 122 (311)
Q Consensus 83 PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~Dg 122 (311)
+-|+||+|.++|||||+...|...|.. .+.+|.+|-.++
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~-~G~rVa~iKH~h 40 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKA-RGYRVATVKHAH 40 (161)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHH-CCCEEEEEEECC
T ss_conf 728999962799734289999999975-793799998658
No 232
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.13 E-value=0.0026 Score=42.20 Aligned_cols=103 Identities=20% Similarity=0.273 Sum_probs=54.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CC-----------------CCEEEEEEC--CCCCCHHHHHH--HCHHHCCCCH
Q ss_conf 99952786667337999999999733-89-----------------868999508--87588268876--0002018981
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQI-SN-----------------FKVSLITTD--GFLFPNAVLTA--NNLMQRKGFP 142 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~-~~-----------------~~V~lis~D--gF~~~n~~l~~--~~l~~rkGfP 142 (311)
++||.|++||||||+++.|..++..- +. .+|..|.++ .-+....+.++ -++ ..+|.|
T Consensus 38 ~vaivG~nGsGKSTLlk~l~Gll~p~~G~I~v~G~~i~~~~~~~~~~~ig~VfQ~Pd~q~~~~tV~e~iafgl-~~~~~~ 116 (273)
T PRK13632 38 YVAILGHNGSGKSTISKILTGLLKPQSGEIKIFGITISKENLKYLRKKIGIIFQNPDNQFIGITVEDDIAFGL-ENKKIP 116 (273)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHEEEEEECCCHHCCCCCHHHHHHHHH-HHCCCC
T ss_conf 9999999998699999999738778887599999999968989987435699877102027751788888678-667999
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEE-------EECCCCEEEEEC
Q ss_conf 3312899999999741266405874044322565898369-------986896599706
Q gi|254780827|r 143 ESYDSNKLLTFLSDVKSGKKKVAVPRYSHSQYDILEGEYD-------TIIQPDILLIEG 194 (311)
Q Consensus 143 eS~D~~~L~~~L~~lK~G~~~V~~PvYsh~~~D~vp~~~~-------vi~~pdIIIvEG 194 (311)
..--.+.....+..+--. .-...+.++ -.-|+.+ ....|+|||+.=
T Consensus 117 ~~~~~~~v~~~l~~~gl~-~~~~~~p~~-----LSGGqkQRvaiA~aLa~~P~iliLDE 169 (273)
T PRK13632 117 PKKMKDIIDDLAKKVGME-DYLKKEPQN-----LSGGQKQRVAIASVLALNPEIIIFDE 169 (273)
T ss_pred HHHHHHHHHHHHHHCCCH-HHHHCCCHH-----CCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 999999999999986988-877478200-----99999999999999971999999807
No 233
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11; InterPro: IPR014155 This entry contains VirB11, a protein that is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer . VirB11 is believed to be an ATPase and is a homologue of the P-like conjugation system TrbB protein and the Flp pilus system protein TadA ..
Probab=96.13 E-value=0.0063 Score=39.64 Aligned_cols=56 Identities=29% Similarity=0.349 Sum_probs=34.7
Q ss_pred HHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCC-CEEEE---EECCCCC-CHHHH
Q ss_conf 99871677667876799952786667337999999999733898-68999---5088758-82688
Q gi|254780827|r 70 YNKFLNLKEESKIPFVVGITGSVAVGKSTFARILCILLQQISNF-KVSLI---TTDGFLF-PNAVL 130 (311)
Q Consensus 70 ~~~fl~~~~~~k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~-~V~li---s~DgF~~-~n~~l 130 (311)
.++||..--..|. =|=|+||+||||||+. +.++...|.. ++..| .-.-+=. ||.+.
T Consensus 147 ~~~Fl~~Ai~~~k--nIii~GGTgSGKTTf~---kal~~~IP~~ER~iTIED~~E~~~~hhpN~V~ 207 (328)
T TIGR02788 147 IKEFLRLAIASRK--NIIISGGTGSGKTTFL---KALVKEIPKDERLITIEDTRELFLPHHPNKVH 207 (328)
T ss_pred HHHHHHHHHHCCC--EEEEEECCCCHHHHHH---HHHHHCCCCCCCEEEEEEEECCCCCCCCCEEE
T ss_conf 8799999987389--1999906897189999---99973276225278885201147888986456
No 234
>PRK00625 shikimate kinase; Provisional
Probab=96.13 E-value=0.016 Score=36.80 Aligned_cols=32 Identities=28% Similarity=0.544 Sum_probs=22.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 99527866673379999999997338986899950887
Q gi|254780827|r 86 VGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGF 123 (311)
Q Consensus 86 IGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF 123 (311)
|-.-|-.||||||+.+.|...|. ...+-+|..
T Consensus 3 I~LIG~mGsGKStiGk~LA~~l~------~~FvD~D~~ 34 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAKFLS------LPFFDTDDL 34 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC------CCEEECHHH
T ss_conf 99989999988999999999939------995774999
No 235
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.12 E-value=0.0027 Score=42.07 Aligned_cols=103 Identities=19% Similarity=0.278 Sum_probs=51.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CC-----------------CCEEEEEECC--CCCCHHHHHH--HCHHHCCCCH
Q ss_conf 99952786667337999999999733-89-----------------8689995088--7588268876--0002018981
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQI-SN-----------------FKVSLITTDG--FLFPNAVLTA--NNLMQRKGFP 142 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~-~~-----------------~~V~lis~Dg--F~~~n~~l~~--~~l~~rkGfP 142 (311)
++||-|++||||||+++.|.-++..- +. .+|.+|.+|- -+....+.++ -++ ...|+|
T Consensus 32 ~vaivG~nGsGKSTL~~~l~Gll~p~~G~I~i~G~~i~~~~~~~lr~~ig~VfQ~p~~~~~~~tV~e~i~fgl-~~~g~~ 110 (276)
T PRK13650 32 WLSIIGHNGSGKSTTVRLIDGLLEAESGSIIIDGDLLTEENVWEIRHKIGMVFQNPDNQFVGATVEDDVAFGL-ENKGIP 110 (276)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHCEEEEEECCCHHCCCCCHHHHHHHHH-HHCCCC
T ss_conf 9999999998799999999738898860899999999867768876414699767201056363999998799-877999
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEE-------EECCCCEEEEEC
Q ss_conf 3312899999999741266405874044322565898369-------986896599706
Q gi|254780827|r 143 ESYDSNKLLTFLSDVKSGKKKVAVPRYSHSQYDILEGEYD-------TIIQPDILLIEG 194 (311)
Q Consensus 143 eS~D~~~L~~~L~~lK~G~~~V~~PvYsh~~~D~vp~~~~-------vi~~pdIIIvEG 194 (311)
..--.+...+.|..+.-. .. -++.-+.-.-|+.+ ....|+|+|+.=
T Consensus 111 ~~e~~~rv~~~l~~~gl~--~~----~~r~p~~LSGGQrQRvaIA~aLa~~P~lLilDE 163 (276)
T PRK13650 111 HEEMKERVNEALELVGMQ--DF----KEREPARLSGGQKQRVAIAGAVAMRPKIIILDE 163 (276)
T ss_pred HHHHHHHHHHHHHHCCCH--HH----HHCCHHHCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 999999999999877992--45----538903389999999999999973999999838
No 236
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.11 E-value=0.0044 Score=40.71 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
++||.|++||||||+.+.|..++.
T Consensus 35 ~~~iiG~nGsGKSTLl~~l~Gll~ 58 (286)
T PRK13641 35 FVALIGHTGSGKSTLMQHFNALLK 58 (286)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999998399999999965989
No 237
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=96.10 E-value=0.0064 Score=39.58 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999527866673379999999
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCI 105 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~ 105 (311)
++||.|++||||||+++.|.-
T Consensus 34 i~aiiG~nGsGKSTL~~~i~G 54 (252)
T CHL00131 34 IHAIMGPNGSGKSTLSKVIAG 54 (252)
T ss_pred EEEEECCCCCCHHHHHHHHCC
T ss_conf 999999999999999999727
No 238
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.09 E-value=0.0034 Score=41.46 Aligned_cols=24 Identities=38% Similarity=0.699 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
|+||.|++||||||+.+.|.-++.
T Consensus 28 i~~iiG~nGaGKSTLl~~i~Gl~~ 51 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLIK 51 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999988999989999999956857
No 239
>pfam07931 CPT Chloramphenicol phosphotransferase-like protein. The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite.
Probab=96.09 E-value=0.0056 Score=39.96 Aligned_cols=36 Identities=28% Similarity=0.363 Sum_probs=29.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 9995278666733799999999973389868999508875
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFL 124 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~ 124 (311)
||=.-|+|.|||||+|+.||.++.. +. -.+++|.|.
T Consensus 3 II~LNG~SSsGKSsiAraLQ~~l~~---p~-~h~~vD~f~ 38 (174)
T pfam07931 3 IILLNGGSSSGKSSIARALQDILDG---PW-LHFGVDAFV 38 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC---CE-EEEEHHHHH
T ss_conf 9997489988879999999984747---46-764285888
No 240
>KOG1533 consensus
Probab=96.09 E-value=0.0077 Score=39.02 Aligned_cols=39 Identities=28% Similarity=0.454 Sum_probs=31.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 7679995278666733799999999973389868999508
Q gi|254780827|r 82 IPFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTD 121 (311)
Q Consensus 82 ~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~D 121 (311)
.||=--|-|++||||||.+.-....++..+ ++|.+|-.|
T Consensus 1 m~fgqvVIGPPgSGKsTYc~g~~~fls~~g-r~~~vVNLD 39 (290)
T KOG1533 1 MPFGQVVIGPPGSGKSTYCNGMSQFLSAIG-RPVAVVNLD 39 (290)
T ss_pred CCCCEEEECCCCCCCCCHHHHHHHHHHHHC-CCEEEEECC
T ss_conf 975068876999985311320999999748-962799568
No 241
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=96.09 E-value=0.0027 Score=42.09 Aligned_cols=24 Identities=42% Similarity=0.450 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
++||.|.+||||||+++.|--++.
T Consensus 44 ilgivGeSGsGKSTl~~~i~gll~ 67 (330)
T PRK09473 44 TLGIVGESGSGKSQTAFALMGLLA 67 (330)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999986898779999999976888
No 242
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=96.08 E-value=0.024 Score=35.66 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 99952786667337999999999
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILL 107 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL 107 (311)
|++|-|+|||||||+.|.+.-|.
T Consensus 52 i~~lvGpSGsGKSTLLr~i~GL~ 74 (382)
T TIGR03415 52 ICVLMGLSGSGKSSLLRAVNGLN 74 (382)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99999999734999999997599
No 243
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.07 E-value=0.0052 Score=40.19 Aligned_cols=43 Identities=23% Similarity=0.335 Sum_probs=29.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC----------------CCCCEEEEEECCCCCCH
Q ss_conf 99952786667337999999999733----------------89868999508875882
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQI----------------SNFKVSLITTDGFLFPN 127 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~----------------~~~~V~lis~DgF~~~n 127 (311)
+++|.|++||||||+.+.+.-+...- ...+|..|-+|.-++|.
T Consensus 30 ~~~iiGpSGsGKSTll~~i~Gl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~Lfp~ 88 (239)
T cd03296 30 LVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRH 88 (239)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEECCCCCCCCC
T ss_conf 99999999977999999997699998639999999999999656776798178210679
No 244
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=96.06 E-value=0.0045 Score=40.63 Aligned_cols=23 Identities=48% Similarity=0.648 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 99952786667337999999999
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILL 107 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL 107 (311)
|+||.|++||||||+.+.+.-+.
T Consensus 33 i~~iiG~sGsGKSTLl~~i~gl~ 55 (257)
T PRK10619 33 VISIIGSSGSGKSTFLRCINFLE 55 (257)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99999899981999999996599
No 245
>pfam06309 Torsin Torsin. This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterized by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of (pfam00004) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia.
Probab=96.06 E-value=0.036 Score=34.49 Aligned_cols=73 Identities=18% Similarity=0.225 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH-HH-CCCCCEEE-EEECCC
Q ss_conf 9999999999999999899999871677667876799952786667337999999999-73-38986899-950887
Q gi|254780827|r 50 FPLSHLLLINVNSAKITCHQYNKFLNLKEESKIPFVVGITGSVAVGKSTFARILCILL-QQ-ISNFKVSL-ITTDGF 123 (311)
Q Consensus 50 ~pl~~ll~~~~~~~~~~~~~~~~fl~~~~~~k~PfIIGIAG~~asGKST~Ar~L~~lL-~~-~~~~~V~l-is~DgF 123 (311)
.-|.+-|.-+--+.+....+..+|+.. ++.+.|.++.-.|++|+|||-+|++|..-| .. ....-|.. +++=.|
T Consensus 21 ~~L~~~lfGQhla~~~v~~al~~~l~~-~~p~KpLVlSfHG~tGtGKn~vs~liA~~Ly~~G~~S~~Vh~fi~~~hF 96 (127)
T pfam06309 21 RDLARRLFGQHLVKQLVVRSVKGHWEN-PKPRKPLVLSFHGWTGTGKNFVAEIIADNLYRDGLRSPYVHHFVATNHF 96 (127)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHCC-CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCC
T ss_conf 999875347798999999999999748-9999974887018999879899999999987543478756884242248
No 246
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.05 E-value=0.014 Score=37.27 Aligned_cols=30 Identities=30% Similarity=0.379 Sum_probs=25.2
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHC
Q ss_conf 876799952786667337999999999733
Q gi|254780827|r 81 KIPFVVGITGSVAVGKSTFARILCILLQQI 110 (311)
Q Consensus 81 k~PfIIGIAG~~asGKST~Ar~L~~lL~~~ 110 (311)
+.+.=|+|+|.+||||||++..+...|..-
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~ 32 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREK 32 (179)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 754599986799845899999999999855
No 247
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=96.05 E-value=0.0067 Score=39.46 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=14.8
Q ss_pred EEEEECCCCCCHHHHHHHHHH
Q ss_conf 999527866673379999999
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCI 105 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~ 105 (311)
.+++.|+|||||||+..+|+.
T Consensus 413 t~AlVG~SGsGKSTii~LL~R 433 (1467)
T PTZ00265 413 TYAFVGESGCGKSTILKLIER 433 (1467)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 799866888756679999963
No 248
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=96.05 E-value=0.0059 Score=39.80 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 99952786667337999999999
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILL 107 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL 107 (311)
+++|.|++||||||+.+.|.-++
T Consensus 24 itaIvGpsGsGKSTLl~~i~~~l 46 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRWVL 46 (197)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 28999999998899999999874
No 249
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=96.04 E-value=0.015 Score=37.12 Aligned_cols=52 Identities=27% Similarity=0.346 Sum_probs=36.0
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCHHHCCCC
Q ss_conf 8767999527866673379999999997338986899950887588268876000201898
Q gi|254780827|r 81 KIPFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTANNLMQRKGF 141 (311)
Q Consensus 81 k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~~~l~~rkGf 141 (311)
.+|-+|=++|-+||||||+|+.|...|.+.+ ..+.++--|.. +.|+-..-||
T Consensus 441 ~~~~~iw~tGlsgsGKstiA~~le~~L~~~g-~~~~~LDGd~l--------R~gl~~dlgf 492 (613)
T PRK05506 441 QKPATVWFTGLSGSGKSTIANLVERRLHALG-RHTYVLDGDNV--------RHGLNRDLGF 492 (613)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCC-CCEEEECCHHH--------HHHHCCCCCC
T ss_conf 9976999977898974799999999999779-98799880898--------7410457797
No 250
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.04 E-value=0.0061 Score=39.73 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
++||.|+.||||||+++.|.-++.
T Consensus 30 ~vaiiG~nGsGKSTLl~~l~Gll~ 53 (275)
T PRK13639 30 MIAILGPNGAGKSTLFLHFNGILK 53 (275)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999999649999999973989
No 251
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.04 E-value=0.006 Score=39.77 Aligned_cols=73 Identities=18% Similarity=0.217 Sum_probs=40.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--------------CC----CCCEEEEEECCCCCCHHH-HHHHCH-HHCCCCHHH
Q ss_conf 9995278666733799999999973--------------38----986899950887588268-876000-201898133
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQ--------------IS----NFKVSLITTDGFLFPNAV-LTANNL-MQRKGFPES 144 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~--------------~~----~~~V~lis~DgF~~~n~~-l~~~~l-~~rkGfPeS 144 (311)
+++|-|++||||||+.+.+.-++.. ++ ..++..|.++.=++|+-. .+.-.. ..-+|.|..
T Consensus 29 ~~~ilGpSG~GKSTllr~i~gl~~p~~G~I~i~g~~i~~~~~~~lrr~ig~vfQ~~~Lfp~ltV~eNi~~~~~~~~~~~~ 108 (242)
T cd03295 29 FLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKE 108 (242)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCHH
T ss_conf 99999999956999999997599998159999999999999789738867991799758888299999999997599999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 1289999999974
Q gi|254780827|r 145 YDSNKLLTFLSDV 157 (311)
Q Consensus 145 ~D~~~L~~~L~~l 157 (311)
--.+...+.|..+
T Consensus 109 ~~~~rv~ell~~v 121 (242)
T cd03295 109 KIRERADELLALV 121 (242)
T ss_pred HHHHHHHHHHHHC
T ss_conf 9999999999874
No 252
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.01 E-value=0.0079 Score=38.96 Aligned_cols=24 Identities=38% Similarity=0.616 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
++||.|-|||||||+++.+-.+|.
T Consensus 33 ~lgiVGESGsGKS~~~~aim~llp 56 (316)
T COG0444 33 ILGIVGESGSGKSVLAKAIMGLLP 56 (316)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 899983897889999999984668
No 253
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.01 E-value=0.0056 Score=39.96 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
++||.|++||||||+++.|.-++.
T Consensus 35 ~~aiiG~nGsGKSTLl~~l~Gl~~ 58 (280)
T PRK13649 35 YTAFIGHTGSGKSTIMQLLNGLHV 58 (280)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999995999869999999966999
No 254
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.01 E-value=0.0029 Score=41.90 Aligned_cols=24 Identities=38% Similarity=0.477 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
++||.|++||||||+.+.|.-++.
T Consensus 35 ~v~iiG~nGsGKSTLl~~l~GLl~ 58 (287)
T PRK13637 35 FVALIGHTGSGKSTLIQHLNGLLK 58 (287)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999999399999999973998
No 255
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=96.00 E-value=0.0058 Score=39.88 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 99527866673379999999997
Q gi|254780827|r 86 VGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 86 IGIAG~~asGKST~Ar~L~~lL~ 108 (311)
|||.|.+||||||+...|..+..
T Consensus 1198 VaiVGrSGsGKSTii~lL~Rfyd 1220 (1467)
T PTZ00265 1198 TAIVGETGSGKSTFMNLLLRFYD 1220 (1467)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99989999839999999997763
No 256
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit; InterPro: IPR005892 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits this transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L. lactis functionally complements an Escherichia coli proU mutant. The complementing locus is similar to a opuA locus in Bacillus subtlis. This clarifies the differences in nomenclature.; GO: 0005524 ATP binding, 0015171 amino acid transmembrane transporter activity, 0006865 amino acid transport, 0016020 membrane.
Probab=96.00 E-value=0.006 Score=39.76 Aligned_cols=107 Identities=31% Similarity=0.431 Sum_probs=58.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC---CCHHHHHH---H---------CHHHC-----------
Q ss_conf 9995278666733799999999973389868999508875---88268876---0---------00201-----------
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFL---FPNAVLTA---N---------NLMQR----------- 138 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~---~~n~~l~~---~---------~l~~r----------- 138 (311)
||-|-|.|||||||+-|+|..|.. |.---|=.||=- .+..+|.+ + +++..
T Consensus 21 i~vi~GlSGsGKsT~vrmlNRLIE----Pt~G~i~IDG~~I~~~~~~eLREVRRkKI~~V~Q~~aLfPHmTil~N~~~g~ 96 (372)
T TIGR01186 21 IFVIMGLSGSGKSTLVRMLNRLIE----PTAGQIFIDGENIMKISDVELREVRRKKIGMVFQQFALFPHMTILQNTSLGL 96 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC----CCCCCEEECCHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 899977899857899999872257----7787467662143136934754442456656544430276415777877747
Q ss_pred --CCCHHHHHHHHHHHHHHHHHCCCCEEEE-ECCCCCCCCCCCCCEE--------EECCCCEEEE-ECCHHCCCCCC
Q ss_conf --8981331289999999974126640587-4044322565898369--------9868965997-06100357654
Q gi|254780827|r 139 --KGFPESYDSNKLLTFLSDVKSGKKKVAV-PRYSHSQYDILEGEYD--------TIIQPDILLI-EGINVLQQNSL 203 (311)
Q Consensus 139 --kGfPeS~D~~~L~~~L~~lK~G~~~V~~-PvYsh~~~D~vp~~~~--------vi~~pdIIIv-EGi~vL~~~~l 203 (311)
.|.|+---.+.-.+.|+. |.. |-|.|.--|-..|..+ .-..||||+- |---.| +|-.
T Consensus 97 ~L~g~~~~~R~ekAle~Lkl-------VglGe~y~~~YPdeLSGG~qQRvGl~RALa~~PdilLMDEaFsAL-DPli 165 (372)
T TIGR01186 97 ELLGIPEQERKEKALELLKL-------VGLGEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSAL-DPLI 165 (372)
T ss_pred HHCCCCHHHHHHHHHHHHHH-------CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCCCC-CCCC
T ss_conf 75188677889999987641-------579876011586201487305899999874387805404764335-7100
No 257
>pfam00437 GSPII_E Type II/IV secretion system protein. This family contains both type II and type IV pathway secretion proteins from bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection.
Probab=96.00 E-value=0.0095 Score=38.42 Aligned_cols=46 Identities=22% Similarity=0.356 Sum_probs=27.6
Q ss_pred HHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCC--CCEEEE
Q ss_conf 999987167766787679995278666733799999999973389--868999
Q gi|254780827|r 68 HQYNKFLNLKEESKIPFVVGITGSVAVGKSTFARILCILLQQISN--FKVSLI 118 (311)
Q Consensus 68 ~~~~~fl~~~~~~k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~--~~V~li 118 (311)
.....||..-...+. .|-|+|++||||||+. .+++...+. .+|..|
T Consensus 126 ~~~~~~L~~~v~~~~--~ilIsG~TGSGKTT~l---~all~~i~~~~~riiti 173 (283)
T pfam00437 126 ADIAEFLRQAVQARG--NILVSGGTGSGKTTLL---YALLNEINTDDERIVTI 173 (283)
T ss_pred HHHHHHHHHHHHCCC--EEEEECCCCCCHHHHH---HHHHHHCCCCCCCEEEE
T ss_conf 999999999998197--5999889999889999---99998408777627873
No 258
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.99 E-value=0.0066 Score=39.49 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 99952786667337999999999
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILL 107 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL 107 (311)
+++|.|++||||||+.+++..+.
T Consensus 29 ~v~i~GpSGsGKSTLl~~i~gl~ 51 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99999799953999999996298
No 259
>PRK13764 ATPase; Provisional
Probab=95.99 E-value=0.0074 Score=39.14 Aligned_cols=25 Identities=36% Similarity=0.476 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 9995278666733799999999973
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQ 109 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~ 109 (311)
=|-|||++|+||||||..|..-+..
T Consensus 261 GilIaG~PGaGKsTfaqalA~~~~~ 285 (605)
T PRK13764 261 GILIAGAPGAGKSTFAQALAEFYAD 285 (605)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 4999779999778999999999984
No 260
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=95.99 E-value=0.0066 Score=39.50 Aligned_cols=43 Identities=30% Similarity=0.421 Sum_probs=29.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC----------------CCCEEEEEECCCCCCH
Q ss_conf 999527866673379999999997338----------------9868999508875882
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQIS----------------NFKVSLITTDGFLFPN 127 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~----------------~~~V~lis~DgF~~~n 127 (311)
++||.|++||||||+.+.+.-++.... ...+..+.++.-++|+
T Consensus 27 ~v~iiG~nGaGKSTLl~~i~Gll~p~sG~I~i~G~~~~~~~~~~r~i~~v~Q~~~l~~~ 85 (233)
T PRK10771 27 QVAILGPSGAGKSTLLNLIAGFLTPASGSLLINGVDHTTTPPSRRPVSMLFQENNLFSH 85 (233)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCCCCCCC
T ss_conf 99999999981999999996599998559999999988799888887999057766889
No 261
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=95.98 E-value=0.016 Score=36.90 Aligned_cols=103 Identities=20% Similarity=0.343 Sum_probs=58.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC----------------C--CCCEEEEEECCCCCCHHHHHH---HCHHHCCCCHH
Q ss_conf 99952786667337999999999733----------------8--986899950887588268876---00020189813
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQI----------------S--NFKVSLITTDGFLFPNAVLTA---NNLMQRKGFPE 143 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~----------------~--~~~V~lis~DgF~~~n~~l~~---~~l~~rkGfPe 143 (311)
+++|-|+|||||||+.|.+.-|++.- + ..++..|-+|.-++|+-.-.+ -++ ..++.|.
T Consensus 33 ~~~llGpSG~GKTTlLr~iaGL~~p~~~~G~I~~~g~~v~~~~~~~R~ig~VFQ~~aLfPhltV~eNia~~L-~~~~~~~ 111 (362)
T TIGR03258 33 LLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGL-RAQKMPK 111 (362)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCEECCCCCHHHCCEEEECCCCCCCCCCCHHHHHHHHH-HHCCCCH
T ss_conf 999999997459999999977767778817999999999989988899489717985368980999998999-8659999
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEE-------EECCCCEEEEEC
Q ss_conf 312899999999741266405874044322565898369-------986896599706
Q gi|254780827|r 144 SYDSNKLLTFLSDVKSGKKKVAVPRYSHSQYDILEGEYD-------TIIQPDILLIEG 194 (311)
Q Consensus 144 S~D~~~L~~~L~~lK~G~~~V~~PvYsh~~~D~vp~~~~-------vi~~pdIIIvEG 194 (311)
+--.+...+.|..+.-.. ..-.|-+.. .-|+.+ .+..|+|+++.=
T Consensus 112 ~e~~~rv~e~l~~vgL~~---~~~r~P~~L---SGGq~QRVAlARAL~~~P~ilLlDE 163 (362)
T TIGR03258 112 ADIAERVADALKLVGLGD---AAAHLPAQL---SGGMQQRIAIARAIAIEPDVLLLDE 163 (362)
T ss_pred HHHHHHHHHHHHHCCCHH---HHHCCHHHC---CHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 999999999987789967---862696678---9989999999999755999899818
No 262
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL; InterPro: IPR012701 Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three-component ABC transporter, where IPR005769 from INTERPRO is the permease, IPR005770 from INTERPRO is the phosphonates binding protein, and IPR012693 from INTERPRO is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lyase complex. This protein (PhnL) and the adjacent-encoded PhnK (IPR012700 from INTERPRO) resemble transporter ATP-binding proteins but are suggested, based on mutagenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se ..
Probab=95.98 E-value=0.0097 Score=38.34 Aligned_cols=36 Identities=28% Similarity=0.399 Sum_probs=24.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCCCEEEEEECCC
Q ss_conf 99952786667337999999999733-8986899950887
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQI-SNFKVSLITTDGF 123 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~-~~~~V~lis~DgF 123 (311)
.+++.|+|||||||+ |+.|...+ |+---..+-..|=
T Consensus 36 cv~L~G~SGaGKSTl---Lk~lYaNYlp~~G~i~~~H~G~ 72 (224)
T TIGR02324 36 CVALSGPSGAGKSTL---LKSLYANYLPDSGRILVRHEGA 72 (224)
T ss_pred EEEEECCCCCCHHHH---HHHHHHCCCCCCCEEEEEECCH
T ss_conf 588536888767899---9976630474686777762404
No 263
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=95.98 E-value=0.0073 Score=39.18 Aligned_cols=42 Identities=29% Similarity=0.426 Sum_probs=27.3
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC--CC--CCEEEEEE
Q ss_conf 67876799952786667337999999999733--89--86899950
Q gi|254780827|r 79 ESKIPFVVGITGSVAVGKSTFARILCILLQQI--SN--FKVSLITT 120 (311)
Q Consensus 79 ~~k~PfIIGIAG~~asGKST~Ar~L~~lL~~~--~~--~~V~lis~ 120 (311)
....|+|+.|.|++|+||||+-+-|-.-..+. .+ ..|++||-
T Consensus 35 ~epPP~vVavvGPpgvGKtTLiksLvk~ytk~~l~~i~GPiTvvs~ 80 (225)
T cd01882 35 EEPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPITVVTG 80 (225)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEC
T ss_conf 8999969999898997788999999999854437557888799946
No 264
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD; InterPro: IPR014138 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are related families..
Probab=95.97 E-value=0.0068 Score=39.40 Aligned_cols=41 Identities=27% Similarity=0.170 Sum_probs=27.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEE-EEEECCCCC
Q ss_conf 799952786667337999999999733898689-995088758
Q gi|254780827|r 84 FVVGITGSVAVGKSTFARILCILLQQISNFKVS-LITTDGFLF 125 (311)
Q Consensus 84 fIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~-lis~DgF~~ 125 (311)
=|+|+-|.||||||++|.-+.-+|..- ..++. -|..||==+
T Consensus 13 ~~~aLvG~SGSGKS~tc~A~Lg~L~~~-~~~~~G~i~l~G~~~ 54 (239)
T TIGR02770 13 EVLALVGESGSGKSLTCLAILGLLPPG-LTQTSGEILLDGRPL 54 (239)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCC-CEEEEEEEEECCCCC
T ss_conf 378887487875899999985035865-223102667717231
No 265
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=95.96 E-value=0.0055 Score=40.04 Aligned_cols=23 Identities=43% Similarity=0.456 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 99952786667337999999999
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILL 107 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL 107 (311)
++||.|++||||||+.+.+.-++
T Consensus 29 ~~~liG~nGsGKSTll~~i~Gl~ 51 (240)
T PRK09493 29 VVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99999999980999999996389
No 266
>PRK07933 thymidylate kinase; Validated
Probab=95.96 E-value=0.11 Score=31.17 Aligned_cols=138 Identities=20% Similarity=0.169 Sum_probs=65.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCC-CHHHHHHHCHHHCCC----CHHH------HHHHHHH-H
Q ss_conf 99952786667337999999999733898689995088758-826887600020189----8133------1289999-9
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLF-PNAVLTANNLMQRKG----FPES------YDSNKLL-T 152 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~-~n~~l~~~~l~~rkG----fPeS------~D~~~L~-~ 152 (311)
+|-+-|.-||||||.++.|...|... +.+|.+..-=+|-- +-.++-+.-+....+ -|.+ -|..... .
T Consensus 2 ~I~fEGiDGsGKSTq~~~L~~~L~~~-g~~v~~~reP~~g~~~~g~~ir~~l~~~~~~~~~~~~~~~lLfaadR~~~~~~ 80 (213)
T PRK07933 2 LIAIEGVDGAGKRTLTEALRAALEAA-GRSVATLAFPRYGRSVHADLAAEALHGRHGDLADSVYAMATLFALDRAGARDE 80 (213)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 89998899998999999999999977-99079984689999848999999980887776577799999999999999999
Q ss_pred HHHHHHCCCCEEEEECCCCCC--CCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHHH
Q ss_conf 999741266405874044322--565898369986896599706100357654575777401000231157730889998
Q gi|254780827|r 153 FLSDVKSGKKKVAVPRYSHSQ--YDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADKRDI 230 (311)
Q Consensus 153 ~L~~lK~G~~~V~~PvYsh~~--~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~i 230 (311)
-...|..|+ .|-.=-|...+ |.- .. .-...+-..++=++-|....+ ..+ .=|+.||+|.|.++-
T Consensus 81 I~paL~~G~-~VI~DRy~~Ss~AYQ~---a~-~~~~~~~~~~~~i~~l~~~~~---~~~------~PDlti~lDv~~e~a 146 (213)
T PRK07933 81 LAGLVAAHD-VVILDRYVASNAAYSA---AR-LHQDADGEAVAWVAELEFGRL---GLP------VPDLQVLLDVPAELA 146 (213)
T ss_pred HHHHHHCCC-EEEEECCHHHHHHHHH---CC-CCCCCCHHHHHHHHHHHHHHH---CCC------CCCEEEEECCCHHHH
T ss_conf 999997889-8998174306898611---01-468754268999999987750---799------998688953899999
Q ss_pred HHHHHHH
Q ss_conf 8799887
Q gi|254780827|r 231 HRWYLNR 237 (311)
Q Consensus 231 ~~wyi~R 237 (311)
.+|.-.|
T Consensus 147 ~~R~~~R 153 (213)
T PRK07933 147 AERARRR 153 (213)
T ss_pred HHHHHHC
T ss_conf 9999832
No 267
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.95 E-value=0.057 Score=33.12 Aligned_cols=45 Identities=22% Similarity=0.399 Sum_probs=30.5
Q ss_pred HHCCCCCCCCCE-EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 716776678767-9995278666733799999999973389868999508
Q gi|254780827|r 73 FLNLKEESKIPF-VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTD 121 (311)
Q Consensus 73 fl~~~~~~k~Pf-IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~D 121 (311)
..|.+ ++++|. ..--+||+|||||.+|+.|...| +++ .-.+|..|
T Consensus 585 raGL~-dp~rP~GsFlf~GptGvGKTELAKaLAe~L--fg~-~~~LIriD 630 (852)
T TIGR03346 585 RAGLS-DPNRPIGSFLFLGPTGVGKTELAKALAEFL--FDD-EDAMVRID 630 (852)
T ss_pred HCCCC-CCCCCCEEEEEECCCCCCHHHHHHHHHHHH--HCC-CCCEEEEC
T ss_conf 71888-899974589986788776899999999998--558-52069843
No 268
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=95.94 E-value=0.007 Score=39.30 Aligned_cols=23 Identities=43% Similarity=0.527 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 99952786667337999999999
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILL 107 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL 107 (311)
+++|-|+|||||||+-+.+.-|.
T Consensus 28 ~~~ivGpSGsGKSTLL~~i~gL~ 50 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99999999844999999998199
No 269
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.94 E-value=0.0053 Score=40.11 Aligned_cols=34 Identities=41% Similarity=0.488 Sum_probs=22.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC--CCEEEEEECCCC
Q ss_conf 9995278666733799999999973389--868999508875
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISN--FKVSLITTDGFL 124 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~--~~V~lis~DgF~ 124 (311)
.+||-|+|||||||++|.|- .-|+. ..|-+ ||.-
T Consensus 364 ~lgIIGPSgSGKSTLaR~lv---G~w~p~~G~VRL---Dga~ 399 (580)
T COG4618 364 ALGIIGPSGSGKSTLARLLV---GIWPPTSGSVRL---DGAD 399 (580)
T ss_pred EEEEECCCCCCHHHHHHHHH---CCCCCCCCCEEE---CCHH
T ss_conf 67887888765778999998---113567873775---6264
No 270
>KOG0055 consensus
Probab=95.94 E-value=0.0087 Score=38.67 Aligned_cols=36 Identities=28% Similarity=0.349 Sum_probs=25.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 9995278666733799999999973389868999508875
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFL 124 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~ 124 (311)
.+++-|++||||||+-. ||.++.++.---|..||.-
T Consensus 381 ~valVG~SGsGKST~i~----LL~RfydP~~G~V~iDG~d 416 (1228)
T KOG0055 381 TVALVGPSGSGKSTLIQ----LLARFYDPTSGEVLIDGED 416 (1228)
T ss_pred EEEEECCCCCCHHHHHH----HHHHHCCCCCCEEEECCCC
T ss_conf 89998899987999999----9997268878659976856
No 271
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=95.93 E-value=0.0035 Score=41.36 Aligned_cols=23 Identities=35% Similarity=0.720 Sum_probs=13.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 99952786667337999999999
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILL 107 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL 107 (311)
|+||+|.+||||||+++.|.-++
T Consensus 312 i~gi~G~nGsGKsTL~k~l~Gl~ 334 (520)
T TIGR03269 312 IFGIVGTSGAGKTTLSKIIAGVL 334 (520)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998788887899999994887
No 272
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=95.92 E-value=0.0061 Score=39.74 Aligned_cols=24 Identities=38% Similarity=0.533 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
|++|-|+|||||||+.|.|..|+.
T Consensus 56 i~~ivG~SGsGKSTLlr~i~gL~~ 79 (400)
T PRK10070 56 IFVIMGLSGSGKSTMVRLLNRLIE 79 (400)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999998469999999975999
No 273
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.92 E-value=0.0038 Score=41.12 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 99952786667337999999999
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILL 107 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL 107 (311)
++||-|+|||||||+.+++..|.
T Consensus 33 ~~~ivG~SGsGKSTllr~i~gL~ 55 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99998898058999999996799
No 274
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.92 E-value=0.0035 Score=41.31 Aligned_cols=24 Identities=42% Similarity=0.613 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
|+||.|++||||||+.++|.-++.
T Consensus 28 i~gLiGpNGaGKSTLlk~i~Gll~ 51 (255)
T cd03236 28 VLGLVGPNGIGKSTALKILAGKLK 51 (255)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999989999709999999967986
No 275
>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.91 E-value=0.051 Score=33.48 Aligned_cols=111 Identities=11% Similarity=0.131 Sum_probs=57.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCHHHCCCCH---------HHHHHHHHHHHHH
Q ss_conf 9995278666733799999999973389868999508875882688760002018981---------3312899999999
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTANNLMQRKGFP---------ESYDSNKLLTFLS 155 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~~~l~~rkGfP---------eS~D~~~L~~~L~ 155 (311)
++=|+|.+|+||||++.-+..-+..-.+.+|..+|.. .+..+...|-+...-|.| ..-+++.+.+...
T Consensus 21 l~vi~g~pg~GKS~~~~~~a~~~a~~~g~~Vl~~slE---m~~~~~~~R~~a~~~~v~~~~i~~~~~~~~~~~~~~~~~~ 97 (186)
T pfam03796 21 LIIIAARPSMGKTAFALNIARNAALKQDKPVLFFSLE---MSAEQLAERLLSSESRISSSKLRSGQLSDEDWERLAEAAG 97 (186)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCC---CCHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 7999967999879999999999999709966875475---5299999999998626765554125121679999999999
Q ss_pred HHHCCCCEEEEECCCCCCC---CCCC--CCEEEECCCCEEEEECCHHCCCCC
Q ss_conf 7412664058740443225---6589--836998689659970610035765
Q gi|254780827|r 156 DVKSGKKKVAVPRYSHSQY---DILE--GEYDTIIQPDILLIEGINVLQQNS 202 (311)
Q Consensus 156 ~lK~G~~~V~~PvYsh~~~---D~vp--~~~~vi~~pdIIIvEGi~vL~~~~ 202 (311)
.++.. .+ -++|+... ++.. .....-.++|+|||.-+..+..+.
T Consensus 98 ~~~~~--~l--~i~~~~~~t~~~i~~~i~~~~~~~~~~~vvvDyl~l~~~~~ 145 (186)
T pfam03796 98 ELSEA--PL--YIDDTPGLSLSELRAQARRLKREHGLGLIVIDYLQLMQGSK 145 (186)
T ss_pred HHHCC--CE--EEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCC
T ss_conf 98539--86--88479999899999999999985599889974898636778
No 276
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=95.91 E-value=0.0069 Score=39.34 Aligned_cols=108 Identities=16% Similarity=0.180 Sum_probs=51.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEE------------------EEECCCCCCHHHHHH-HC-HHHCCCCHHH
Q ss_conf 999527866673379999999997338986899------------------950887588268876-00-0201898133
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSL------------------ITTDGFLFPNAVLTA-NN-LMQRKGFPES 144 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~l------------------is~DgF~~~n~~l~~-~~-l~~rkGfPeS 144 (311)
|+|+.|+.|+||||+.++|.-++..- ...|.+ ++.+.-+|++-...+ .. ...-+|.|..
T Consensus 30 i~gllGpNGAGKTTl~~~l~Gl~~p~-~G~i~i~G~~~~~~~~~~~~~ig~~pq~~~l~~~ltv~e~l~~~~~~~g~~~~ 108 (301)
T TIGR03522 30 IVGFLGPNGAGKSTTMKIITGYLPPD-SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQ 108 (301)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC-CCEEEECCEECCCCHHHHHHHCEEECCCCCCCCCCCHHHHHHHHHHHCCCCHH
T ss_conf 99999999981999999996795689-77799927513448799985376745556567888999999999997399989
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEE--CCCCCCCCCCCCCEEEECCCCEEEEEC
Q ss_conf 12899999999741266405874--044322565898369986896599706
Q gi|254780827|r 145 YDSNKLLTFLSDVKSGKKKVAVP--RYSHSQYDILEGEYDTIIQPDILLIEG 194 (311)
Q Consensus 145 ~D~~~L~~~L~~lK~G~~~V~~P--vYsh~~~D~vp~~~~vi~~pdIIIvEG 194 (311)
-..+...+.+..+.-.. ....+ .||.-.-.++.=..-.+..|+++|+.-
T Consensus 109 ~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~kqrl~la~aL~~~P~lliLDE 159 (301)
T TIGR03522 109 LLKQRVEEMIELVGLRP-EQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDE 159 (301)
T ss_pred HHHHHHHHHHHHHCCHH-HHCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 99999999998818856-6548276779988445998898707998999948
No 277
>KOG3079 consensus
Probab=95.91 E-value=0.053 Score=33.38 Aligned_cols=153 Identities=16% Similarity=0.196 Sum_probs=80.3
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHH--HHH-----CHHHC-CCCHHHHHHHHH
Q ss_conf 6787679995278666733799999999973389868999508875882688--760-----00201-898133128999
Q gi|254780827|r 79 ESKIPFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVL--TAN-----NLMQR-KGFPESYDSNKL 150 (311)
Q Consensus 79 ~~k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l--~~~-----~l~~r-kGfPeS~D~~~L 150 (311)
..+.|.||=|-||+||||-|.|..+.+.+ + -+.+|+.+-+..-... .++ ..|.. +=.|.-.=..+|
T Consensus 4 ~~~~~~IifVlGGPGsgKgTqC~kiv~ky---~---ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL 77 (195)
T KOG3079 4 KLDKPPIIFVLGGPGSGKGTQCEKIVEKY---G---FTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLL 77 (195)
T ss_pred CCCCCCEEEEECCCCCCCCHHHHHHHHHC---C---CEEECHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 54579889997689888226999999976---9---54632879999988054676789999999869967489999999
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCC-CEEECCCCCEEEEEECCHHH
Q ss_conf 99999741266405874044322565898369986896599706100357654575777-40100023115773088999
Q gi|254780827|r 151 LTFLSDVKSGKKKVAVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKA-TPMISDFLDFSIYIDADKRD 229 (311)
Q Consensus 151 ~~~L~~lK~G~~~V~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~-~~~vsD~fD~sIyVDad~~~ 229 (311)
.+-|.+..... -.+|+|- |+...+... ...+..-.||-+|+|++++.
T Consensus 78 ~~am~~~~~~~---------------------------~fLIDGy-----PR~~~q~~~fe~~i~~~~~fvl~fdc~ee~ 125 (195)
T KOG3079 78 EEAMRSSGDSN---------------------------GFLIDGY-----PRNVDQLVEFERKIQGDPDFVLFFDCPEET 125 (195)
T ss_pred HHHHHHCCCCC---------------------------EEEECCC-----CCCHHHHHHHHHHHCCCCCEEEEEECCHHH
T ss_conf 99999657788---------------------------3886589-----887688999998856787779998688899
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 887998878887665201677799886059989999999999886316689995
Q gi|254780827|r 230 IHRWYLNRFLKLRETAFLNPRSYFHHFTEISEEQSLKIAETAWNNINLPNLQHN 283 (311)
Q Consensus 230 i~~wyi~Rf~~lr~~a~~~~~s~~~~y~~l~~~ea~~~a~~iW~~in~pnl~e~ 283 (311)
+.+|.+.|-..-. ++- +.++++..-...+.....|.++-|
T Consensus 126 ~l~Rll~R~q~~~-R~D-------------Dn~esikkR~et~~~~t~Pvi~~~ 165 (195)
T KOG3079 126 MLKRLLHRGQSNS-RSD-------------DNEESIKKRLETYNKSTLPVIEYY 165 (195)
T ss_pred HHHHHHHHCCCCC-CCC-------------CCHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 9999996066578-788-------------755779999999987001899998
No 278
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family; InterPro: IPR006001 This family of proteins includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases (IPR000577 from INTERPRO).; GO: 0016301 kinase activity, 0005975 carbohydrate metabolic process.
Probab=95.91 E-value=0.0054 Score=40.06 Aligned_cols=114 Identities=29% Similarity=0.393 Sum_probs=57.4
Q ss_pred EECCCCCCHHHHHHHHHHHHHH-CCCCCEEEEEECCCCCCHHHHHHHCHHHCCCCHHH----HHH-HHHHHHHHH-HHCC
Q ss_conf 5278666733799999999973-38986899950887588268876000201898133----128-999999997-4126
Q gi|254780827|r 88 ITGSVAVGKSTFARILCILLQQ-ISNFKVSLITTDGFLFPNAVLTANNLMQRKGFPES----YDS-NKLLTFLSD-VKSG 160 (311)
Q Consensus 88 IAG~~asGKST~Ar~L~~lL~~-~~~~~V~lis~DgF~~~n~~l~~~~l~~rkGfPeS----~D~-~~L~~~L~~-lK~G 160 (311)
|.|.+||||||+|..|+..|.. +|+ ..-|--|+|| |.+=.++ |.+ |.|=| ++| ..+..-+.+ .+++
T Consensus 3 lmGvaG~GKs~~a~~l~~~lg~iyPd--~~yieGDdLH-P~~Ni~K---Ms~-GiPL~DdDR~pWL~~l~~~~~~~~~~~ 75 (175)
T TIGR01313 3 LMGVAGSGKSTIASALAHRLGDIYPD--AKYIEGDDLH-PAANIEK---MSR-GIPLNDDDRWPWLKNLADALAQAAAKN 75 (175)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHCCC--CCCCCCCCCC-CHHHHHH---HCC-CCCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 76027862889999999985431578--8756886667-8777987---317-888870120437999999999998457
Q ss_pred CCEEEEECCCCCCCCCCCCCEEEECCCCEEE--EECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHHHHHHHHHH
Q ss_conf 6405874044322565898369986896599--7061003576545757774010002311577308899988799887
Q gi|254780827|r 161 KKKVAVPRYSHSQYDILEGEYDTIIQPDILL--IEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADKRDIHRWYLNR 237 (311)
Q Consensus 161 ~~~V~~PvYsh~~~D~vp~~~~vi~~pdIII--vEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~i~~wyi~R 237 (311)
.+..++=-+.. .+..+. |||= .|+ +. + -+- =||++++.+++.+|.-.|
T Consensus 76 --~~~~~~~~CSA---LKr~YR-----D~LR~s~~~------~~------~------~~~-FiyL~~~~~~~~~R~~~R 125 (175)
T TIGR01313 76 --KVHLVIITCSA---LKRKYR-----DILRSSLEE------AE------P------ELH-FIYLSGSKEVILKRMKSR 125 (175)
T ss_pred --CCCCEEEEEEC---CHHHHH-----HHHHHHHCC------CC------C------CEE-EEEECCCHHHHHHHHHHC
T ss_conf --74544788401---113555-----665422026------89------8------437-886368989999996107
No 279
>TIGR00101 ureG urease accessory protein UreG; InterPro: IPR004400 This is a GTP hydrolase for assembly of the nickel metallocentre of urease. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. They play a central role in nitrogen metabolism.; GO: 0005524 ATP binding, 0016151 nickel ion binding.
Probab=95.90 E-value=0.013 Score=37.39 Aligned_cols=148 Identities=20% Similarity=0.331 Sum_probs=78.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHH-HHCHH--------HCCCCHHHH---HHHHHH
Q ss_conf 799952786667337999999999733898689995088758826887-60002--------018981331---289999
Q gi|254780827|r 84 FVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLT-ANNLM--------QRKGFPESY---DSNKLL 151 (311)
Q Consensus 84 fIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~-~~~l~--------~rkGfPeS~---D~~~L~ 151 (311)
.=|||||++||||+.+-..|..-+++ ...+++||-|=|-..+++.- +...+ ..-|+|.|- |..+=+
T Consensus 2 ~~iG~~GPvG~Gktal~e~l~~~~~~--~y~~av~tndiyt~eda~fl~~~~~l~~~ri~GvetGGCPhtairedas~nl 79 (199)
T TIGR00101 2 VKIGVAGPVGSGKTALIEALTRELAK--KYDLAVITNDIYTQEDAEFLVKNSVLPPERILGVETGGCPHTAIREDASLNL 79 (199)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH--CCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
T ss_conf 36665047776468999999998874--0667787311001246888876412662226774158987300100021218
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCC-----CCEEEEEECC
Q ss_conf 99997412664058740443225658983699868965997061003576545757774010002-----3115773088
Q gi|254780827|r 152 TFLSDVKSGKKKVAVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDF-----LDFSIYIDAD 226 (311)
Q Consensus 152 ~~L~~lK~G~~~V~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~-----fD~sIyVDad 226 (311)
+-+.++.+.-..+.. ++=-.-+|-....+ ..+-.|+-|+ =+-|-+....|..+++...-||+ .|+.=||-||
T Consensus 80 ~a~~~~~~rf~~~~~-~~~esGGdnl~atf-~P~l~d~t~~-vidva~G~kiPrkGGPGit~sdllvink~dlaP~vGad 156 (199)
T TIGR00101 80 EAVEELEARFPDLEL-VFIESGGDNLSATF-SPELADLTIF-VIDVAEGDKIPRKGGPGITRSDLLVINKIDLAPFVGAD 156 (199)
T ss_pred HHHHHHHHCCCCEEE-EEEECCCCCCEEEC-CCCEEEEEEE-EEEECCCCCCCCCCCCCCCCHHEEEEECCCCCCCCCCC
T ss_conf 899988621564048-99832886200002-7640236788-99720587456778898530012243200125311230
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999887998878887
Q gi|254780827|r 227 KRDIHRWYLNRFLKL 241 (311)
Q Consensus 227 ~~~i~~wyi~Rf~~l 241 (311)
..+ ++|+.+.
T Consensus 157 l~~-----m~rd~~~ 166 (199)
T TIGR00101 157 LKV-----MERDAKK 166 (199)
T ss_pred HHH-----HHHHHHH
T ss_conf 354-----4356786
No 280
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=95.90 E-value=0.0035 Score=41.33 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=16.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 99952786667337999999999
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILL 107 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL 107 (311)
++||.|.+||||||+++.|.-++
T Consensus 352 ~l~lvG~sGsGKSTl~r~l~gl~ 374 (623)
T PRK10261 352 TLSLVGESGSGKSTTGRALLRLV 374 (623)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89997678766899999985664
No 281
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=95.88 E-value=0.0086 Score=38.70 Aligned_cols=23 Identities=35% Similarity=0.605 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 99952786667337999999999
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILL 107 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL 107 (311)
|.||.|.+||||||+.|.+..+.
T Consensus 33 i~giIG~SGaGKSTLlr~i~gL~ 55 (343)
T PRK11153 33 IYGVIGASGAGKSTLIRCVNLLE 55 (343)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99999999986999999996599
No 282
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.88 E-value=0.022 Score=35.88 Aligned_cols=72 Identities=22% Similarity=0.216 Sum_probs=39.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC----------------CCCEEEEEECCCCCCHH-HHHH--HCHHHCCCCHHHH
Q ss_conf 999527866673379999999997338----------------98689995088758826-8876--0002018981331
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQIS----------------NFKVSLITTDGFLFPNA-VLTA--NNLMQRKGFPESY 145 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~----------------~~~V~lis~DgF~~~n~-~l~~--~~l~~rkGfPeS~ 145 (311)
+++|-|++||||||+-+++.-++..-. ..++..|.+|.-++|+- +.+. -++.. .+.+..-
T Consensus 26 ~~~ilGpSGsGKSTLl~li~Gl~~p~sG~I~i~G~di~~~~~~~r~ig~vfQ~~~L~p~ltV~eNi~~~l~~-~~~~~~~ 104 (211)
T cd03298 26 ITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSP-GLKLTAE 104 (211)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHHH-CCCCHHH
T ss_conf 999999999559999999976999885299999999999998898679995388668999499998758864-6888299
Q ss_pred HHHHHHHHHHHH
Q ss_conf 289999999974
Q gi|254780827|r 146 DSNKLLTFLSDV 157 (311)
Q Consensus 146 D~~~L~~~L~~l 157 (311)
+.+...+.|..+
T Consensus 105 ~~~~v~~~l~~~ 116 (211)
T cd03298 105 DRQAIEVALARV 116 (211)
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999876
No 283
>PRK11701 phnK phosphonates transport ATP-binding protein; Provisional
Probab=95.88 E-value=0.0044 Score=40.69 Aligned_cols=24 Identities=38% Similarity=0.558 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
|+||.|++||||||+.+.+.-++.
T Consensus 34 i~~iiG~nGaGKSTLl~~i~G~~~ 57 (258)
T PRK11701 34 VLGIVGESGSGKTTLLNALSARLA 57 (258)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999988899889999999856788
No 284
>pfam02374 ArsA_ATPase Anion-transporting ATPase. This Pfam family represents a conserved domain, which is sometimes repeated, in an anion-transporting ATPase. The ATPase is involved in the removal of arsenate, antimonite, and arsenate from the cell.
Probab=95.87 E-value=0.018 Score=36.50 Aligned_cols=40 Identities=28% Similarity=0.230 Sum_probs=33.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 99952786667337999999999733898689995088758
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLF 125 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~ 125 (311)
+|=.+|.=||||||+|-.+...+++- +.+|-+||||-=|.
T Consensus 3 ~i~~~GKGGVGKTT~AaA~A~~~A~~-G~rvLlvStDPAhs 42 (304)
T pfam02374 3 WIFFGGKGGVGKTTVSCATAVRLSEQ-GKKVLLVSTDPAHS 42 (304)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCEEEEEECCCCCH
T ss_conf 99995798574899999999999958-99299994697214
No 285
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.84 E-value=0.0059 Score=39.82 Aligned_cols=71 Identities=17% Similarity=0.231 Sum_probs=38.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCE--------------EEEEECCCCCC-HHHHHH--HCHHHCCCCHHHHHH
Q ss_conf 9995278666733799999999973389868--------------99950887588-268876--000201898133128
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKV--------------SLITTDGFLFP-NAVLTA--NNLMQRKGFPESYDS 147 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V--------------~lis~DgF~~~-n~~l~~--~~l~~rkGfPeS~D~ 147 (311)
++||.|++||||||+.+.+.-++..- ...| ..+.++.-++| ..+.+. -++ ...|.|..-..
T Consensus 29 ~~~lvGpnGaGKSTLl~~i~Gl~~p~-~G~I~~~G~~i~~~~~~~g~vfQ~~~l~p~~tv~env~~~l-~~~g~~~~~~~ 106 (255)
T PRK11248 29 LLVVLGPSGCGKTTLLNLIAGFVPPQ-HGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFGL-QLAGVEKMQRL 106 (255)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCC-CCEEEECCCCCCCCCHHCEEEECCCCCCCCCCHHHHHHHHH-HHCCCCHHHHH
T ss_conf 99999999846999999997599889-97185799647886211069945575475687999999899-87489878999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999974
Q gi|254780827|r 148 NKLLTFLSDV 157 (311)
Q Consensus 148 ~~L~~~L~~l 157 (311)
+...+.|..+
T Consensus 107 ~~~~~~L~~v 116 (255)
T PRK11248 107 EIAHQMLKKV 116 (255)
T ss_pred HHHHHHHHHC
T ss_conf 9999999976
No 286
>KOG1384 consensus
Probab=95.84 E-value=0.0036 Score=41.29 Aligned_cols=170 Identities=19% Similarity=0.281 Sum_probs=71.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC--CCCHHH-HHHHCHHHCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 999527866673379999999997338986899950887--588268-87600020189813312899999999741266
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGF--LFPNAV-LTANNLMQRKGFPESYDSNKLLTFLSDVKSGK 161 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF--~~~n~~-l~~~~l~~rkGfPeS~D~~~L~~~L~~lK~G~ 161 (311)
||+|.|.+|||||-+|=- |-.+++ .++|.-|.- |.-..+ ........++|.|.- .|.-+....
T Consensus 9 VvvI~G~TGsGKSrLaVd---LA~rf~---~EIINsDkmQvYkGldivTnK~t~~e~~gVPHH--------Llg~l~~~~ 74 (348)
T KOG1384 9 VVVIMGATGAGKSRLAVD---LATRFP---GEIINSDKMQVYKGLDIVTNKITLQERKGVPHH--------LLGHLHPEA 74 (348)
T ss_pred EEEEECCCCCCHHHHHHH---HHHHCC---CEEECCCCEEEECCCCCCCCCCCHHHCCCCCHH--------HHCCCCHHH
T ss_conf 999955777770466788---897578---646515633563276620166875540798767--------707688676
Q ss_pred CEEEEECCCCCCCCCCCCCEEEECCCCEEEEECC-----HHCCCCCCCCCCCCCEEEC-------CC-CC-EEEEEECCH
Q ss_conf 4058740443225658983699868965997061-----0035765457577740100-------02-31-157730889
Q gi|254780827|r 162 KKVAVPRYSHSQYDILEGEYDTIIQPDILLIEGI-----NVLQQNSLSDNQKATPMIS-------DF-LD-FSIYIDADK 227 (311)
Q Consensus 162 ~~V~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi-----~vL~~~~l~~~~~~~~~vs-------D~-fD-~sIyVDad~ 227 (311)
+.+++.|....-.-+. .+.....+=||+|= ..|..... +-...++.+ ++ +| +-++|||+.
T Consensus 75 -e~t~~~F~~~a~~aie---~I~~rgk~PIv~GGs~~yi~al~~~~~--d~~~dp~~~~~g~~pS~lryd~c~lWlda~~ 148 (348)
T KOG1384 75 -EYTAGEFEDDASRAIE---EIHSRGKLPIVVGGSNSYLQALLSKRF--DPKIDPFSSNTGSIPSELRYDCCFLWLDADQ 148 (348)
T ss_pred -HCCHHHHHHHHHHHHH---HHHHCCCCCEEECCCHHHHHHHHHCCC--CCCCCCCCCCCCCCCCCCCCCEEEEEEECCH
T ss_conf -4269999999999999---998579977796784066899960687--7455854356788875566650799972666
Q ss_pred HHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 998879988788876652-016777998860599899999999998863
Q gi|254780827|r 228 RDIHRWYLNRFLKLRETA-FLNPRSYFHHFTEISEEQSLKIAETAWNNI 275 (311)
Q Consensus 228 ~~i~~wyi~Rf~~lr~~a-~~~~~s~~~~y~~l~~~ea~~~a~~iW~~i 275 (311)
.++..+.-.|--.....- +....++|..| .-+....+..+..+|+.+
T Consensus 149 ~VL~~~l~~RVD~Ml~~Gl~eE~~~f~~~~-~s~~~~~i~~~iGv~e~d 196 (348)
T KOG1384 149 AVLFERLDKRVDDMLESGLLEELRDFYDPY-NSSYRSGIRKAIGVPEFD 196 (348)
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-HCCCCCCCHHCCCCHHHH
T ss_conf 777888988899999733099999985554-168654211205827875
No 287
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=95.82 E-value=0.016 Score=36.88 Aligned_cols=24 Identities=46% Similarity=0.643 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
|+|+.|+.||||||+.+.|.-++.
T Consensus 49 i~gLlGpNGaGKSTllk~l~Gl~~ 72 (236)
T cd03267 49 IVGFIGPNGAGKTTTLKILSGLLQ 72 (236)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999998309999999964948
No 288
>TIGR00602 rad24 checkpoint protein rad24; InterPro: IPR004582 To be effective as a mechanism that preserves genomic integrity, the DNA damage checkpoint must be extremely sensitive in its ability to detect DNA damage. In Saccharomyces cerevisiae the Ddc1/Rad17/Mec3 complex and Rad24 are DNA damage checkpoint components which may promote checkpoint activation by "sensing" DNA damage directly . Rad24 shares sequence homology with RF-c, a protein that recognises DNA template/RNA primer hybrids during DNA replication. The Ddc1 complex has structural homology to proliferating-cell nuclear antigen (PCNA), which clamps onto DNA and confers processivity to DNA polymerases delta and epsilon. Rad24 is postulated to recognise DNA lesions and then recruit the Ddc1 complex to generate checkpoint signals. ; GO: 0006281 DNA repair, 0007049 cell cycle, 0005634 nucleus.
Probab=95.81 E-value=0.015 Score=37.11 Aligned_cols=37 Identities=30% Similarity=0.286 Sum_probs=27.4
Q ss_pred HHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 99871677667876799952786667337999999999
Q gi|254780827|r 70 YNKFLNLKEESKIPFVVGITGSVAVGKSTFARILCILL 107 (311)
Q Consensus 70 ~~~fl~~~~~~k~PfIIGIAG~~asGKST~Ar~L~~lL 107 (311)
.+.||..+ ..+---|.-|+||+|+||||+-++|...|
T Consensus 106 ~a~~Le~~-~~rGGs~LLi~GPsGCgKsT~~k~LsKel 142 (670)
T TIGR00602 106 KAQVLESA-KKRGGSILLITGPSGCGKSTTIKILSKEL 142 (670)
T ss_pred HHHCCCCC-CCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 52002045-66775378841755884478999998886
No 289
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.80 E-value=0.0092 Score=38.51 Aligned_cols=100 Identities=29% Similarity=0.385 Sum_probs=50.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC-----------------------CCCHH-HHHH--HCHHHC
Q ss_conf 999527866673379999999997338986899950887-----------------------58826-8876--000201
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGF-----------------------LFPNA-VLTA--NNLMQR 138 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF-----------------------~~~n~-~l~~--~~l~~r 138 (311)
++.|.|+|||||||+-|-|..| .. +.---|..||- ++|+. +++. .+.+.-
T Consensus 30 vv~iiGpSGSGKSTlLRclN~L-E~---~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPH~TvleNv~lap~~v 105 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGL-EE---PDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV 105 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCC-CC---CCCCEEEECCEECCCHHHHHHHHHHCCEECCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 8999899999888999999778-68---8786499998722545469999985576624665465532988877753997
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEE-------EECCCCEEEEEC
Q ss_conf 89813312899999999741266405874044322565898369-------986896599706
Q gi|254780827|r 139 KGFPESYDSNKLLTFLSDVKSGKKKVAVPRYSHSQYDILEGEYD-------TIIQPDILLIEG 194 (311)
Q Consensus 139 kGfPeS~D~~~L~~~L~~lK~G~~~V~~PvYsh~~~D~vp~~~~-------vi~~pdIIIvEG 194 (311)
+|-|..=-.+.-.+.|.++.-.. .+-.|-.... -|+.+ .--.|+|+++.-
T Consensus 106 ~~~~k~eA~~~A~~lL~~VGL~d---ka~~yP~qLS---GGQqQRVAIARALaM~P~vmLFDE 162 (240)
T COG1126 106 KKLSKAEAREKALELLEKVGLAD---KADAYPAQLS---GGQQQRVAIARALAMDPKVMLFDE 162 (240)
T ss_pred CCCCHHHHHHHHHHHHHHCCCHH---HHHHCCCCCC---CHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 29899999999999999869556---6653951048---078899999998717998886369
No 290
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.79 E-value=0.012 Score=37.62 Aligned_cols=45 Identities=20% Similarity=0.362 Sum_probs=27.5
Q ss_pred HHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC-CCCEEEEE
Q ss_conf 998716776678767999527866673379999999997338-98689995
Q gi|254780827|r 70 YNKFLNLKEESKIPFVVGITGSVAVGKSTFARILCILLQQIS-NFKVSLIT 119 (311)
Q Consensus 70 ~~~fl~~~~~~k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~-~~~V~lis 119 (311)
...||..--..+. =|-|+|++||||||+.+ +|+...| +.++..|-
T Consensus 151 ~~~fL~~aV~~r~--NIlIsGgTGSGKTTlln---ALl~~IP~~eRIvtIE 196 (343)
T PRK13851 151 LEAFLHACVVGRL--TMLLCGPTGSGKTTMSK---TLISAIPPQERLITIE 196 (343)
T ss_pred HHHHHHHHHHCCC--CEEEECCCCCCHHHHHH---HHHHCCCCCCCEEEEC
T ss_conf 9999999997698--89998889861999999---9996289655279961
No 291
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=95.78 E-value=0.0073 Score=39.18 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=16.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 99952786667337999999999
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILL 107 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL 107 (311)
|+||.|.+||||||+++.|.-++
T Consensus 290 i~gi~G~nGsGKsTLl~~L~Gl~ 312 (513)
T PRK13549 290 ILGIAGLVGAGRTELVQCLFGAY 312 (513)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89974798865899999983898
No 292
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=95.77 E-value=0.017 Score=36.78 Aligned_cols=112 Identities=16% Similarity=0.210 Sum_probs=58.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--------------CC--CCCEEEEEECCCCCCHH-HHHH--HCHHHCCCCHHHH
Q ss_conf 9995278666733799999999973--------------38--98689995088758826-8876--0002018981331
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQ--------------IS--NFKVSLITTDGFLFPNA-VLTA--NNLMQRKGFPESY 145 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~--------------~~--~~~V~lis~DgF~~~n~-~l~~--~~l~~rkGfPeS~ 145 (311)
+++|-|++||||||+.++|.-++.. .+ ...|..|.++.-+||+- +.+. -++. ..|.+..-
T Consensus 31 ~~~llGpsG~GKSTllr~i~Gl~~p~~G~I~i~g~~v~~~~~~~r~ig~vfQ~~~L~p~ltV~eNi~~~l~-~~~~~~~e 109 (369)
T PRK11000 31 FVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLK-LAGAKKEE 109 (369)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHH-HCCCCHHH
T ss_conf 99999999736999999997799999549999999998799778786999407854789899999977887-63898899
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEE-------EECCCCEEEEECCHHCCCCCC
Q ss_conf 2899999999741266405874044322565898369-------986896599706100357654
Q gi|254780827|r 146 DSNKLLTFLSDVKSGKKKVAVPRYSHSQYDILEGEYD-------TIIQPDILLIEGINVLQQNSL 203 (311)
Q Consensus 146 D~~~L~~~L~~lK~G~~~V~~PvYsh~~~D~vp~~~~-------vi~~pdIIIvEGi~vL~~~~l 203 (311)
-.+...+.+..+.-.. .-++..+.-.-|+.+ .+..|+|+++.-=..-.++.+
T Consensus 110 ~~~rv~~~l~~~~l~~------~~~r~p~~LSGGq~QRvaiARAL~~~P~illlDEP~s~LD~~~ 168 (369)
T PRK11000 110 INQRVNQVAEVLQLAH------LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAAL 168 (369)
T ss_pred HHHHHHHHHHHHCCHH------HHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHH
T ss_conf 9999999998637453------5558874669427799999988625998588436667888666
No 293
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.76 E-value=0.015 Score=37.03 Aligned_cols=36 Identities=28% Similarity=0.403 Sum_probs=22.7
Q ss_pred CCE-EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 767-999527866673379999999997338986899950
Q gi|254780827|r 82 IPF-VVGITGSVAVGKSTFARILCILLQQISNFKVSLITT 120 (311)
Q Consensus 82 ~Pf-IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~ 120 (311)
.|+ +|=++|++||||||+ |-..|+......+-++|.
T Consensus 256 ~p~GliLvTGPTGSGKTTT---LY~~L~~ln~~~~nI~Ti 292 (500)
T COG2804 256 RPQGLILVTGPTGSGKTTT---LYAALSELNTPERNIITI 292 (500)
T ss_pred CCCEEEEEECCCCCCHHHH---HHHHHHHHCCCCCEEEEE
T ss_conf 8970899968999988999---999999862788508984
No 294
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=95.75 E-value=0.016 Score=36.80 Aligned_cols=37 Identities=38% Similarity=0.421 Sum_probs=30.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 99952786667337999999999733898689995088
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDG 122 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~Dg 122 (311)
||=.+|-=||||||+|-.|...+++- +.+|-+|++|-
T Consensus 1 i~~~sGKGGVGKTTvAaalA~~lA~~-G~rvLlvs~DP 37 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAEE-GKKVLLVSTDP 37 (217)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHC-CCEEEEEECCC
T ss_conf 98997899661999999999999968-99499995898
No 295
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.75 E-value=0.0099 Score=38.31 Aligned_cols=38 Identities=21% Similarity=0.128 Sum_probs=24.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 9995278666733799999999973389868999508875
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFL 124 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~ 124 (311)
++||.|++||||||+.+.|.-++. +...---|..||.-
T Consensus 37 i~~ilGpnGaGKSTLl~~l~Gl~~--~~~~~G~i~~~g~~ 74 (194)
T cd03213 37 LTAIMGPSGAGKSTLLNALAGRRT--GLGVSGEVLINGRP 74 (194)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEEEECCEE
T ss_conf 999998999519999999857777--89962899999999
No 296
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.74 E-value=0.026 Score=35.49 Aligned_cols=122 Identities=12% Similarity=0.064 Sum_probs=62.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEE-EEEECCCCCCHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 99952786667337999999999733898689-99508875882688760002018981331289999999974126640
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVS-LITTDGFLFPNAVLTANNLMQRKGFPESYDSNKLLTFLSDVKSGKKK 163 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~-lis~DgF~~~n~~l~~~~l~~rkGfPeS~D~~~L~~~L~~lK~G~~~ 163 (311)
+|=|+|||||||||+.+.| ..+.+. .+. .+|.- =.|.. .+ - +-|-+-.-.+|...+++|.--
T Consensus 4 LivvsgPSGaGK~Tli~~l---~~~~~~-~~~~s~s~t--TRp~e----~~---g----~dy~fvs~eeF~~~i~~g~F~ 66 (184)
T PRK10078 4 LIWLMGPSGSGKDSLLAAL---RQREQT-QLLVAHRYI--TRPAS----AG---S----ENHIALSEQEFFTRAGQNLFA 66 (184)
T ss_pred EEEEECCCCCCHHHHHHHH---HHCCCC-CEEEEEEEC--CCCCC----CC---C----CCCEECCHHHHHHHHHCCCEE
T ss_conf 9999899869999999999---844899-889998723--78999----99---9----682887999999999779829
Q ss_pred EEEECCCCCCCCCCCCCEE-EECCCCEEEEECCH-HCCCCCCCCCCCCCEEECCCC-C--EEEEEECCHHHHHHHHHHH
Q ss_conf 5874044322565898369-98689659970610-035765457577740100023-1--1577308899988799887
Q gi|254780827|r 164 VAVPRYSHSQYDILEGEYD-TIIQPDILLIEGIN-VLQQNSLSDNQKATPMISDFL-D--FSIYIDADKRDIHRWYLNR 237 (311)
Q Consensus 164 V~~PvYsh~~~D~vp~~~~-vi~~pdIIIvEGi~-vL~~~~l~~~~~~~~~vsD~f-D--~sIyVDad~~~i~~wyi~R 237 (311)
.++-+|.+.-+ ++.+.. .+....-||++|=- .+.. +...+ + +.+++.++.+.+++|...|
T Consensus 67 ~~w~~~g~~YG--~~~~v~~~l~~G~dVi~~g~~~~~~~------------~~~~~~~~~~~~~i~ps~~~L~~RL~~R 131 (184)
T PRK10078 67 LSWHANGLYYG--VGIEIDLWLHAGFDVVVNGSRAHLPQ------------ARARYQSALLPVCLQVSPEILRQRLENR 131 (184)
T ss_pred EEEEECCCCCC--CCHHHHHHHHCCCEEEEECHHHHHHH------------HHHHCCCCEEEEEECCCHHHHHHHHHHC
T ss_conf 99986695667--07899999974994999517989999------------9986798589999579999999999972
No 297
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein B; InterPro: IPR004435 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cisdithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism , . In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which coverts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner . MoCF is the active co-factor in eukaryotic and some prokaryotic molybdoenzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdoenzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF . Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 () of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) . The MobB domain is similar to that of the urease accessory protein UreG and the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocentres of their respective target enzymes. It is involved in the final step of molybdenum-cofactor biosynthesis. While its precise function has not been identified it is thought to be involved in the transfer of a guanine dinucleotide moiety to molybdopterin, as it shows GTP-binding and weak GTPase activity . The MobB protein (P32125 from SWISSPROT) from Escherichia coli, which is comprised of this domain, is a homodimer . Each molecule is composed of two distinct regions - an outer region comprised of 6 beta-strands and three alpha helices, and an inner region comprised of a two-strand beta hairpin followed by an alpha helix. These regions require interaction with the second monomer to allow proper folding to occur. The two monomers are intertwined and form an extensive 16-stranded beta-sheet. While the active site could not be positively identified, the presence of highly conserved residues suggests the substrate binding site occurs in the central solvent channel.; GO: 0005525 GTP binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=95.74 E-value=0.015 Score=37.11 Aligned_cols=99 Identities=22% Similarity=0.311 Sum_probs=57.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECC--CCCCHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99952786667337999999999733898689995088--7588268876000201898133128999999997412664
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDG--FLFPNAVLTANNLMQRKGFPESYDSNKLLTFLSDVKSGKK 162 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~Dg--F~~~n~~l~~~~l~~rkGfPeS~D~~~L~~~L~~lK~G~~ 162 (311)
||+|+|.+.|||||+...|-..|.. .+.+|.+|=-+| =|-. .++..|- +||-+ -++|..
T Consensus 1 v~~i~G~k~SGKTtL~~~l~~~L~~-~Gy~V~~IKH~ghG~H~~--~~d~~Gk-------Ds~rh---------r~AGA~ 61 (165)
T TIGR00176 1 VLQIVGYKNSGKTTLIERLVKALKA-RGYRVATIKHDGHGHHDF--DIDKEGK-------DSYRH---------REAGAD 61 (165)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHC-CCCCEEEEEECCCCCCCC--EECCCCC-------CCHHH---------HHCCCC
T ss_conf 9378962588678999999999970-799508986089888756--5279987-------31332---------104362
Q ss_pred E-EEEECCCCCCCCCCCCC--------EEEECC--CCEEEEECCHHCCCCC
Q ss_conf 0-58740443225658983--------699868--9659970610035765
Q gi|254780827|r 163 K-VAVPRYSHSQYDILEGE--------YDTIIQ--PDILLIEGINVLQQNS 202 (311)
Q Consensus 163 ~-V~~PvYsh~~~D~vp~~--------~~vi~~--pdIIIvEGi~vL~~~~ 202 (311)
. |-.+.+....-..++|+ .....+ .||++|||.=-...|+
T Consensus 62 ~v~~~~~~~~~~~~~~~g~~e~~L~~~l~~~~~~~~D~~LvEGfK~~~~pK 112 (165)
T TIGR00176 62 AVIVASSERYAVMTETQGEEELDLEALLKRLADRELDIILVEGFKDSPLPK 112 (165)
T ss_pred EEEEECCCEEEEEEECCCCCCCCHHHHHHHCCCCCCCEEEEECCCCCCCCE
T ss_conf 788667906899875289998787999864285526878985245578874
No 298
>KOG0055 consensus
Probab=95.74 E-value=0.014 Score=37.36 Aligned_cols=36 Identities=28% Similarity=0.388 Sum_probs=28.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 9995278666733799999999973389868999508875
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFL 124 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~ 124 (311)
=+++.|+|||||||+- .||.|+.++..-.|..||.=
T Consensus 1018 TvALVG~SGsGKSTvI----~LLeRfYdp~~G~V~IDg~d 1053 (1228)
T KOG0055 1018 TVALVGPSGSGKSTVI----SLLERFYDPDAGKVKIDGVD 1053 (1228)
T ss_pred EEEEECCCCCCHHHHH----HHHHHHCCCCCCEEEECCCC
T ss_conf 8999889988799899----99998438888759987831
No 299
>PTZ00243 ABC transporter; Provisional
Probab=95.74 E-value=0.026 Score=35.41 Aligned_cols=42 Identities=24% Similarity=0.395 Sum_probs=29.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC--------CCEEEEEECCCCCCHHH
Q ss_conf 9995278666733799999999973389--------86899950887588268
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISN--------FKVSLITTDGFLFPNAV 129 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~--------~~V~lis~DgF~~~n~~ 129 (311)
+.+|.|++||||||+ |+.+|...+. .+|+-+++.-+......
T Consensus 688 L~~IvG~vGSGKSSL---L~aiLGE~~~~~G~v~~~g~iAYv~Q~pWi~n~Ti 737 (1560)
T PTZ00243 688 LTVVLGATGSGKSTL---LQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATV 737 (1560)
T ss_pred EEEEECCCCCCHHHH---HHHHHCCCCCCCEEEEECCCEEEECCCCHHCCCCH
T ss_conf 899989999879999---99996888435638997470897578444058739
No 300
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.74 E-value=0.0066 Score=39.49 Aligned_cols=73 Identities=29% Similarity=0.318 Sum_probs=39.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CC-----------------CCEEEEEECC--CCCCHHHHHHHCH-HHCCCCHH
Q ss_conf 99952786667337999999999733-89-----------------8689995088--7588268876000-20189813
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQI-SN-----------------FKVSLITTDG--FLFPNAVLTANNL-MQRKGFPE 143 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~-~~-----------------~~V~lis~Dg--F~~~n~~l~~~~l-~~rkGfPe 143 (311)
++||.|++||||||+.+.|.-++... +. .++..|.+|- -++...+.++-.. +...+.+.
T Consensus 29 i~~iiG~nGaGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ig~v~Q~p~~~~~~~tv~e~i~~~~~~~~~~~ 108 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPE 108 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEECCCCCHHHHHCCEEEEEECCHHHCCCCCHHHHHHHHHHHCCCCH
T ss_conf 99998899998999999996467798887789999999799899840389997783253055869999999999869999
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 31289999999974
Q gi|254780827|r 144 SYDSNKLLTFLSDV 157 (311)
Q Consensus 144 S~D~~~L~~~L~~l 157 (311)
.-..+...+.|..+
T Consensus 109 ~~~~~~~~~~l~~~ 122 (211)
T cd03225 109 EEIEERVEEALELV 122 (211)
T ss_pred HHHHHHHHHHHHHC
T ss_conf 99999999999986
No 301
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=95.73 E-value=0.0044 Score=40.70 Aligned_cols=24 Identities=38% Similarity=0.515 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
++||.|++||||||+.++|.-++.
T Consensus 40 iv~LiG~nGaGKSTLlr~i~Gl~~ 63 (257)
T PRK11247 40 FVAVVGRSGCGKSTLLRLLAGLET 63 (257)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999998998889999999965898
No 302
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.73 E-value=0.0053 Score=40.13 Aligned_cols=24 Identities=33% Similarity=0.580 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
++|+.|-|||||||++|.+-.|+.
T Consensus 41 ~~glVGESG~GKSTlgr~i~~L~~ 64 (268)
T COG4608 41 TLGLVGESGCGKSTLGRLILGLEE 64 (268)
T ss_pred EEEEEECCCCCHHHHHHHHHCCCC
T ss_conf 789993688877879999972838
No 303
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=95.72 E-value=0.0054 Score=40.05 Aligned_cols=25 Identities=36% Similarity=0.476 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 9995278666733799999999973
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQ 109 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~ 109 (311)
++||.|+.||||||+.++|.-++..
T Consensus 28 ~~~l~G~NGsGKSTLlk~i~Gl~~p 52 (201)
T cd03231 28 ALQVTGPNGSGKTTLLRILAGLSPP 52 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 9999999999999999999667788
No 304
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.72 E-value=0.03 Score=35.04 Aligned_cols=111 Identities=16% Similarity=0.270 Sum_probs=54.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCC-C-------------CCEEEEEECCCCCCHHH-HHHHCH-HHCCCCHHHHHH
Q ss_conf 7999527866673379999999997338-9-------------86899950887588268-876000-201898133128
Q gi|254780827|r 84 FVVGITGSVAVGKSTFARILCILLQQIS-N-------------FKVSLITTDGFLFPNAV-LTANNL-MQRKGFPESYDS 147 (311)
Q Consensus 84 fIIGIAG~~asGKST~Ar~L~~lL~~~~-~-------------~~V~lis~DgF~~~n~~-l~~~~l-~~rkGfPeS~D~ 147 (311)
=|+|+.|+-|+||||+-+.|.-++..-. . .++..++.+.-+|++-. .+.-.. ..-+|.+.....
T Consensus 27 ei~gllG~NGaGKTTll~~i~Gl~~p~~G~i~i~G~~~~~~~~~~ig~~pq~~~l~~~ltv~e~l~~~~~l~g~~~~~~~ 106 (210)
T cd03269 27 EIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEAR 106 (210)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHH
T ss_conf 59999989998499999999600266899899999868844360199964766679999999999999997499999999
Q ss_pred HHHHHHHHHHHCCC-CEEEEECCCCCCCCCCCCCEEEECCCCEEEEEC
Q ss_conf 99999999741266-405874044322565898369986896599706
Q gi|254780827|r 148 NKLLTFLSDVKSGK-KKVAVPRYSHSQYDILEGEYDTIIQPDILLIEG 194 (311)
Q Consensus 148 ~~L~~~L~~lK~G~-~~V~~PvYsh~~~D~vp~~~~vi~~pdIIIvEG 194 (311)
+...+.+..+.-.. ..-.+-.+|.-.-.++.=....+..|+++|+.=
T Consensus 107 ~~~~~~l~~~~L~~~~~~~~~~LSgG~kqrv~la~al~~~p~lllLDE 154 (210)
T cd03269 107 RRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDE 154 (210)
T ss_pred HHHHHHHHHCCCCHHHCCHHHHCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 999999998699705488057789989999999999957998999928
No 305
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.71 E-value=0.005 Score=40.33 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
++||.|++||||||+++.+.-++.
T Consensus 39 ~~aIiG~nGsGKSTL~~~l~Gll~ 62 (289)
T PRK13645 39 VTCVIGTTGSGKSTMIQLTNGLII 62 (289)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999999579999999965988
No 306
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=95.71 E-value=0.022 Score=35.91 Aligned_cols=39 Identities=28% Similarity=0.290 Sum_probs=32.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 9995278666733799999999973389868999508875
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFL 124 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~ 124 (311)
||=.+|-=||||||+|-.+...|++. +.+|-+||+|-=|
T Consensus 2 ~i~~~GKGGVGKTT~AaalA~~lA~~-G~kVLlvstDPah 40 (254)
T cd00550 2 YIFFGGKGGVGKTTISAATAVRLAEQ-GKKVLLVSTDPAH 40 (254)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCEEEEEECCCCC
T ss_conf 89996898554899999999999968-9949999589864
No 307
>PRK10436 hypothetical protein; Provisional
Probab=95.71 E-value=0.018 Score=36.59 Aligned_cols=33 Identities=24% Similarity=0.403 Sum_probs=22.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 999527866673379999999997338986899950
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITT 120 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~ 120 (311)
+|-|+|++||||||+ |-.+|.........++|.
T Consensus 217 liLvtGPTGSGKTTT---Lya~L~~l~~~~~~I~Ti 249 (461)
T PRK10436 217 LVLVTGPTGSGKTVT---LYSALQTLNTAQINICSV 249 (461)
T ss_pred EEEEECCCCCCHHHH---HHHHHHHHCCCCCEEEEE
T ss_conf 799978999956999---999997434677169996
No 308
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.70 E-value=0.0095 Score=38.42 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
++||.|+.||||||+.+.+.-++.
T Consensus 32 ~~aliG~NGaGKSTLl~~i~Gll~ 55 (277)
T PRK13652 32 RIAVIGPNGAGKSTLFKHFNGILK 55 (277)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999999479999999966999
No 309
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.70 E-value=0.026 Score=35.41 Aligned_cols=103 Identities=20% Similarity=0.153 Sum_probs=56.9
Q ss_pred CCCCCCCCHHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHH
Q ss_conf 47999889899998744-88846899999998999999999999999989999987167766787679995278666733
Q gi|254780827|r 19 SKFSSILSKKISNQLLS-FDSPIDSTEIYKIYFPLSHLLLINVNSAKITCHQYNKFLNLKEESKIPFVVGITGSVAVGKS 97 (311)
Q Consensus 19 ~~~~~~l~~~~~~~l~~-~~d~i~~~ev~~iy~pl~~ll~~~~~~~~~~~~~~~~fl~~~~~~k~PfIIGIAG~~asGKS 97 (311)
++..+..++.=+++|+. .+-.-...+-..++--|...|.-...... ...+...-...+.||+|-+.|--|+|||
T Consensus 79 aDvg~e~~~~i~~~l~~~~~~~~~~~~~~~v~~~l~~~l~~il~~~~-----~~~~~~~~~~~~~p~Vil~vGVNG~GKT 153 (340)
T COG0552 79 ADVGVETAEEIIEELRKREGKKKKIKDEETVKEALREALIEILRPVD-----KVDLPLEIPKEKKPFVILFVGVNGVGKT 153 (340)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCC-----CCCCHHHHCCCCCCEEEEEEECCCCCHH
T ss_conf 02469999999999998751023689889999999999999846554-----4443655235898679999934888637
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCCCHH
Q ss_conf 7999999999733898689995088758826
Q gi|254780827|r 98 TFARILCILLQQISNFKVSLITTDGFLFPNA 128 (311)
Q Consensus 98 T~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~ 128 (311)
|+.-.|...|.+ .+.+|.+.-.|-| +.-+
T Consensus 154 TTIaKLA~~l~~-~g~~VllaA~DTF-RAaA 182 (340)
T COG0552 154 TTIAKLAKYLKQ-QGKSVLLAAGDTF-RAAA 182 (340)
T ss_pred HHHHHHHHHHHH-CCCEEEEEECCHH-HHHH
T ss_conf 179999999997-8986999823347-8999
No 310
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=95.69 E-value=0.016 Score=36.90 Aligned_cols=25 Identities=40% Similarity=0.538 Sum_probs=21.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 7999527866673379999999997
Q gi|254780827|r 84 FVVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 84 fIIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
=|+|+.|+.||||||+.++|.-++.
T Consensus 32 ei~gllG~NGaGKSTllk~i~Gl~~ 56 (218)
T cd03266 32 EVTGLLGPNGAGKTTTLRMLAGLLE 56 (218)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 2999999999849999999977977
No 311
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=95.69 E-value=0.0059 Score=39.82 Aligned_cols=24 Identities=38% Similarity=0.434 Sum_probs=17.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
++||.|.+||||||+++.|-.++.
T Consensus 44 ~vaLvGeSGSGKSTl~~~l~gll~ 67 (623)
T PRK10261 44 TLAIVGESGSGKSVTALALMRLLE 67 (623)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999998999789999999977987
No 312
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=95.69 E-value=0.032 Score=34.86 Aligned_cols=36 Identities=33% Similarity=0.374 Sum_probs=32.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 9995278666733799999999973389868999508
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTD 121 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~D 121 (311)
+|.|.|--|+||||++.-|..-|++.+ .+|.+|-.|
T Consensus 2 kiaiyGKGGIGKSTttaNl~aaLA~~G-~kVl~IgcD 37 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAKRG-KKVLQIGCD 37 (267)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-CEEEEECCC
T ss_conf 799977996578778999999999879-959997789
No 313
>pfam02223 Thymidylate_kin Thymidylate kinase.
Probab=95.68 E-value=0.11 Score=31.34 Aligned_cols=128 Identities=23% Similarity=0.201 Sum_probs=58.4
Q ss_pred EECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCHHHC-CCCHHHH------HH-HHHHHH-HHHHH
Q ss_conf 527866673379999999997338986899950887588268876000201-8981331------28-999999-99741
Q gi|254780827|r 88 ITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTANNLMQR-KGFPESY------DS-NKLLTF-LSDVK 158 (311)
Q Consensus 88 IAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~~~l~~r-kGfPeS~------D~-~~L~~~-L~~lK 158 (311)
|=|.-||||||.++.|..-|..-+ .+|...--.|- -+....-+.-+... .-.|.+. |. ..+.+. ...++
T Consensus 1 ~EGiDGsGKsTq~~~L~~~L~~~g-~~v~~~~ep~~-~~~g~~ir~~l~~~~~~~~~~~~llf~adR~~~~~~~i~~~l~ 78 (186)
T pfam02223 1 IEGLDGAGKTTQAELLKERLKEQG-IKVVLTREPGG-TPIGEKIRELLLRNEELSPLTEALLFAADRIEHLEEKIKPALK 78 (186)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCC-CEEEEEECCCC-CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 979999899999999999999879-90899749999-8379999999850125899999999999999999999999997
Q ss_pred CCCCEEEEECCCC--CCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHHHHHHHHH
Q ss_conf 2664058740443--22565898369986896599706100357654575777401000231157730889998879988
Q gi|254780827|r 159 SGKKKVAVPRYSH--SQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADKRDIHRWYLN 236 (311)
Q Consensus 159 ~G~~~V~~PvYsh--~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~i~~wyi~ 236 (311)
.|+ .|-.=-|-+ ..|.-.. ...+. +-+..+..... .+ .=|+.||+|++.+...+|.-.
T Consensus 79 ~g~-~VI~DRy~~S~~ayq~~~------~~~~~---~~i~~l~~~~~----~~------~PDlti~Ldv~pe~~~~Ri~~ 138 (186)
T pfam02223 79 QGK-TVICDRYLFSSIAYQGAA------GGLGL---DLVLSLNPDVP----GP------KPDLTFLLDVDPEVALKRLRR 138 (186)
T ss_pred CCC-EEEEECCCCCHHHHHHHC------CCCCH---HHHHHHHHHCC----CC------CCCEEEEEECCHHHHHHHHHH
T ss_conf 699-899607313489987620------47789---99999987206----78------999899983899999999986
Q ss_pred H
Q ss_conf 7
Q gi|254780827|r 237 R 237 (311)
Q Consensus 237 R 237 (311)
|
T Consensus 139 R 139 (186)
T pfam02223 139 R 139 (186)
T ss_pred C
T ss_conf 6
No 314
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=95.68 E-value=0.0088 Score=38.64 Aligned_cols=22 Identities=36% Similarity=0.362 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q ss_conf 9995278666733799999999
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCIL 106 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~l 106 (311)
|+||.|++||||||+.+.|.-+
T Consensus 29 i~~iiG~nGaGKSTLl~~i~G~ 50 (248)
T PRK09580 29 VHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999999999998377
No 315
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=95.68 E-value=0.0071 Score=39.26 Aligned_cols=19 Identities=42% Similarity=0.728 Sum_probs=7.8
Q ss_pred EEEEECCCCCCHHHHHHHH
Q ss_conf 9995278666733799999
Q gi|254780827|r 85 VVGITGSVAVGKSTFARIL 103 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L 103 (311)
|+||.|.+||||||+++.|
T Consensus 28 i~~LvG~sGsGKSTL~~~l 46 (520)
T TIGR03269 28 VLGILGRSGAGKSVLMHVL 46 (520)
T ss_pred EEEEECCCCCHHHHHHHHH
T ss_conf 9999999996999999999
No 316
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.67 E-value=0.035 Score=34.57 Aligned_cols=27 Identities=30% Similarity=0.349 Sum_probs=24.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 999527866673379999999997338
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQIS 111 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~ 111 (311)
|+=.-|+||+||||+++.|+..+.++.
T Consensus 80 IllL~GPvGsGKStl~~~Lk~~lE~ys 106 (361)
T smart00763 80 ILYLLGPVGGGKSSLVECLKRGLEEYS 106 (361)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf 999988998877999999999999862
No 317
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=95.63 E-value=0.0092 Score=38.52 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=20.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 799952786667337999999999
Q gi|254780827|r 84 FVVGITGSVAVGKSTFARILCILL 107 (311)
Q Consensus 84 fIIGIAG~~asGKST~Ar~L~~lL 107 (311)
=++||.|++||||||+.+.|.-++
T Consensus 34 e~~~ilGpnGsGKSTLl~~i~G~~ 57 (226)
T cd03234 34 QVMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred CEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 099999899960999999996789
No 318
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.62 E-value=0.0087 Score=38.68 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 99952786667337999999999
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILL 107 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL 107 (311)
+++|.|+|||||||+.+.+.-+.
T Consensus 28 ~~~ivGpSG~GKSTllr~i~Gl~ 50 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99999999983999999998599
No 319
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=95.62 E-value=0.012 Score=37.72 Aligned_cols=25 Identities=44% Similarity=0.598 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 9995278666733799999999973
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQ 109 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~ 109 (311)
+.||.|-|||||||+|+.|.-++..
T Consensus 37 ~lgIvGESGsGKSt~a~~i~gll~~ 61 (539)
T COG1123 37 ILGIVGESGSGKSTLALALMGLLPE 61 (539)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 8999868988889999998554888
No 320
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=95.61 E-value=0.21 Score=29.32 Aligned_cols=23 Identities=43% Similarity=0.482 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 99527866673379999999997
Q gi|254780827|r 86 VGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 86 IGIAG~~asGKST~Ar~L~~lL~ 108 (311)
+-|.|+.|+||||+||.|..+|-
T Consensus 32 vLi~G~~GtgKStlaR~l~~iLP 54 (334)
T PRK13407 32 VLVFGDRGTGKSTAVRALAALLP 54 (334)
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 89978998659999999997289
No 321
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=95.60 E-value=0.031 Score=34.97 Aligned_cols=44 Identities=34% Similarity=0.318 Sum_probs=34.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHH
Q ss_conf 999527866673379999999997338986899950887588268
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAV 129 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~ 129 (311)
|+=..|--||||||+|-.+...++..+ .+|-+||||.=|--...
T Consensus 4 iv~f~GKGGVGKTT~aaA~A~~lA~~g-~kvLlvStDPAhsL~d~ 47 (322)
T COG0003 4 IVFFTGKGGVGKTTIAAATAVKLAESG-KKVLLVSTDPAHSLGDV 47 (322)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCCCCHHHH
T ss_conf 999936885458999999999999759-90799984898744765
No 322
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.60 E-value=0.0055 Score=40.01 Aligned_cols=24 Identities=42% Similarity=0.787 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
|+||-|+.||||||+.++|.-+++
T Consensus 27 iv~liGpNGaGKSTLlk~l~Gll~ 50 (246)
T cd03237 27 VIGILGPNGIGKTTFIKMLAGVLK 50 (246)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999997999769999999977878
No 323
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.60 E-value=0.0055 Score=40.05 Aligned_cols=24 Identities=29% Similarity=0.256 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
++||.|+.||||||+.+.|.-++.
T Consensus 33 ~~aiiG~NGsGKSTLl~~l~Gl~~ 56 (273)
T PRK13647 33 KTAILGPNGAGKSTLLLHLNGIYT 56 (273)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999999759999999966988
No 324
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.58 E-value=0.011 Score=37.86 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
|+||.|+.||||||+.+.+.-++.
T Consensus 28 i~~liG~nGaGKSTLl~~i~Gl~~ 51 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLLP 51 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999999999859999999977988
No 325
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=95.58 E-value=0.036 Score=34.53 Aligned_cols=29 Identities=34% Similarity=0.559 Sum_probs=23.6
Q ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 76678767999527866673379999999
Q gi|254780827|r 77 KEESKIPFVVGITGSVAVGKSTFARILCI 105 (311)
Q Consensus 77 ~~~~k~PfIIGIAG~~asGKST~Ar~L~~ 105 (311)
......|||++|.|++|.||||+-|-|..
T Consensus 63 p~d~PPPfIvavvGPpGtGKsTLirSlVr 91 (1077)
T COG5192 63 PKDLPPPFIVAVVGPPGTGKSTLIRSLVR 91 (1077)
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 55589975899636998874689999999
No 326
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=95.57 E-value=0.014 Score=37.32 Aligned_cols=42 Identities=29% Similarity=0.436 Sum_probs=28.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-------CCCCEEEEEECCCCCC
Q ss_conf 99952786667337999999999733-------8986899950887588
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQI-------SNFKVSLITTDGFLFP 126 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~-------~~~~V~lis~DgF~~~ 126 (311)
.+||.|..||||||+.++|.-+.... ++.+|..++++..+.+
T Consensus 35 ~vgLvG~NGaGKSTLlriLaG~~~~~~G~i~~~~~~~igyl~Q~~~l~~ 83 (556)
T PRK11819 35 KIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDP 83 (556)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCEEEEEECCCCCCC
T ss_conf 9999999997199999998479987883599879967999815677788
No 327
>PRK10895 putative ABC transporter ATP-binding protein YhbG; Provisional
Probab=95.55 E-value=0.015 Score=37.12 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
|+||.|+.||||||+.+.|.-++.
T Consensus 31 i~~liGpNGaGKSTLl~~i~Gl~~ 54 (241)
T PRK10895 31 IVGLLGPNGAGKTTTFYMVVGIVP 54 (241)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999988999869999999967888
No 328
>TIGR02857 CydD ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; InterPro: IPR014216 The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain and a C-terminal ATP-binding domain. In Escherichia coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in the export of redox-active thiol compounds such as cysteine and glutathione , . The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this entry are all either found in the gammaproteobacterial context, or the CydABCD context. All members of this entry scoring above the trusted cut off at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature, based on this operon in Bacillus subtilis, assigns cydC to the third gene in the operon, where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologues in this family in accordance with the precedence of publication of the E. coli name, CydD..
Probab=95.55 E-value=0.019 Score=36.35 Aligned_cols=82 Identities=21% Similarity=0.303 Sum_probs=44.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCCCEEEE---------EE-----C-CCC------------CCHHHHHHHCHH
Q ss_conf 99952786667337999999999733-89868999---------50-----8-875------------882688760002
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQI-SNFKVSLI---------TT-----D-GFL------------FPNAVLTANNLM 136 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~-~~~~V~li---------s~-----D-gF~------------~~n~~l~~~~l~ 136 (311)
+++|.|+||+||||+ |+.||.-. |..-...| +. | +.+ ++.+..+.- .+
T Consensus 380 ~vAl~G~SGaGKSTL---L~lLLGf~~P~~G~i~v~~~Gg~~G~~L~~~~~~W~W~~~iaWv~Q~P~l~~gtiaeNi-~L 455 (570)
T TIGR02857 380 RVALVGPSGAGKSTL---LNLLLGFVEPTEGAIVVERDGGINGVPLAEADADWSWRDQIAWVPQHPFLFAGTIAENI-RL 455 (570)
T ss_pred EEEEEECCCCCHHHH---HHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHCEEEECCCCCCCHHHHHHHH-HH
T ss_conf 488862799978899---99997157644646887448885397642113102255413430566601364799999-73
Q ss_pred HCCCC-----HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 01898-----13312899999999741266405874044322
Q gi|254780827|r 137 QRKGF-----PESYDSNKLLTFLSDVKSGKKKVAVPRYSHSQ 173 (311)
Q Consensus 137 ~rkGf-----PeS~D~~~L~~~L~~lK~G~~~V~~PvYsh~~ 173 (311)
.++|. -++-....+.+|++.+-.|- ..++=++-.
T Consensus 456 a~~~A~~~~~~~A~~~agl~~~~~~LP~Gl---~t~~Ge~G~ 494 (570)
T TIGR02857 456 ARPDASDAEIREALERAGLDEFVAALPQGL---DTPIGEGGA 494 (570)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCC---CCCCCCCCC
T ss_conf 489999899999999972899999711131---343588888
No 329
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=95.55 E-value=0.0099 Score=38.29 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
|+||.|.+||||||+++.|.-++.
T Consensus 276 ivgl~G~nGsGKsTL~~~l~Gl~~ 299 (491)
T PRK10982 276 ILGIAGLVGAKRTDIVETLFGIRE 299 (491)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899778999978899999819867
No 330
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.54 E-value=0.0062 Score=39.66 Aligned_cols=107 Identities=21% Similarity=0.221 Sum_probs=51.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCC---------------------EEEEEEC--CCCCCHHHHHH--HCHHHCC
Q ss_conf 999527866673379999999997338986---------------------8999508--87588268876--0002018
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFK---------------------VSLITTD--GFLFPNAVLTA--NNLMQRK 139 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~---------------------V~lis~D--gF~~~n~~l~~--~~l~~rk 139 (311)
++||.|+.||||||+.+.|.-++.... .+ |..+.++ .-++...+.++ -+. .+.
T Consensus 34 ~~aiiG~NGaGKSTLl~~i~Gll~p~~-G~I~~~G~~i~~~~~~~~~~r~~ig~vfQ~p~~~l~~~tV~e~v~~g~-~~~ 111 (285)
T PRK13636 34 VTAILGGNGAGKSTLFQNLNGILKPSS-GRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGA-VNL 111 (285)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCC-CEEEECCEECCCCHHHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHHH-HHC
T ss_conf 999999999809999999965988886-089999999874434499998740699707642447574999999999-985
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEEECCC--CCCCCCCCCCEEEECCCCEEEEEC
Q ss_conf 9813312899999999741266405874044--322565898369986896599706
Q gi|254780827|r 140 GFPESYDSNKLLTFLSDVKSGKKKVAVPRYS--HSQYDILEGEYDTIIQPDILLIEG 194 (311)
Q Consensus 140 GfPeS~D~~~L~~~L~~lK~G~~~V~~PvYs--h~~~D~vp~~~~vi~~pdIIIvEG 194 (311)
|.|+.-..+...+.|..+--. .-...|.++ .-.-.|+.=.......|+|+|+.=
T Consensus 112 g~~~~e~~~rv~~~L~~~gl~-~~~~~~~~~LSGGqkqRvaIA~aLa~~P~iLlLDE 167 (285)
T PRK13636 112 KLPEDEVRKRVDNALKRTGIE-HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDE 167 (285)
T ss_pred CCCHHHHHHHHHHHHHHCCCH-HHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 999999999999999875988-66528800199999999999999974998999978
No 331
>PRK13975 thymidylate kinase; Provisional
Probab=95.53 E-value=0.088 Score=31.86 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
.|-+-|.-||||||.++.|..-|.
T Consensus 4 fI~fEGiDGsGKsTq~~lL~~~L~ 27 (198)
T PRK13975 4 FIVFEGIDGSGKTTQAKLLAEKLN 27 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 899989988869999999999738
No 332
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=95.51 E-value=0.013 Score=37.57 Aligned_cols=102 Identities=19% Similarity=0.310 Sum_probs=53.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--------------CC--CCCEEEEEECCCCCCHH-HHHH--HCHHHCCCCHHHH
Q ss_conf 9995278666733799999999973--------------38--98689995088758826-8876--0002018981331
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQ--------------IS--NFKVSLITTDGFLFPNA-VLTA--NNLMQRKGFPESY 145 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~--------------~~--~~~V~lis~DgF~~~n~-~l~~--~~l~~rkGfPeS~ 145 (311)
+++|.|++||||||+.++|.-++.. .+ ..++..|.++.-++|+- +.+. -++. .+|.|..-
T Consensus 45 ~~~llGpSGsGKSTLlr~iaGl~~p~sG~I~~~G~~v~~~~~~~R~ig~VfQ~~aLfp~lTV~eNv~~~l~-~~~~~~~e 123 (378)
T PRK09452 45 FLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRYVNTVFQSYALFPHMTVFENVAFGLR-MQKTPAAE 123 (378)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHH-HCCCCHHH
T ss_conf 99999899976999999997699998469999999989899789885899227643789869999998997-65998799
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECC-CCCCCCCCCCCE-------EEECCCCEEEEEC
Q ss_conf 289999999974126640587404-432256589836-------9986896599706
Q gi|254780827|r 146 DSNKLLTFLSDVKSGKKKVAVPRY-SHSQYDILEGEY-------DTIIQPDILLIEG 194 (311)
Q Consensus 146 D~~~L~~~L~~lK~G~~~V~~PvY-sh~~~D~vp~~~-------~vi~~pdIIIvEG 194 (311)
-.+...+.|..+.-. -| ++..+.-.-|+. -.+..|+|||+.-
T Consensus 124 ~~~rv~e~L~~v~L~-------~~~~r~p~~LSGGqqQRVaiARAL~~~P~vLLLDE 173 (378)
T PRK09452 124 ITPRVMEALRMVQLE-------EFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDE 173 (378)
T ss_pred HHHHHHHHHHHCCCH-------HHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 999999998750734-------35436835499889999999998623998999578
No 333
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.51 E-value=0.017 Score=36.72 Aligned_cols=34 Identities=18% Similarity=0.302 Sum_probs=22.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCCCEEEE
Q ss_conf 9995278666733799999999973-389868999
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQ-ISNFKVSLI 118 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~-~~~~~V~li 118 (311)
=|-|+|++||||||+.+.|...+.. .|+.++.+|
T Consensus 146 nilVsGgTGSGKTTllnaL~~~i~~~~p~eRivtI 180 (323)
T PRK13833 146 NIVISGGTGSGKTTLANAVIAEIVASAPEDRLVIL 180 (323)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCCHHEEEEE
T ss_conf 68999177775689999999864028932339994
No 334
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=95.50 E-value=0.01 Score=38.12 Aligned_cols=19 Identities=32% Similarity=0.431 Sum_probs=10.7
Q ss_pred EEEEECCCCCCHHHHHHHH
Q ss_conf 9995278666733799999
Q gi|254780827|r 85 VVGITGSVAVGKSTFARIL 103 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L 103 (311)
++||+|..||||||+++.|
T Consensus 288 ~~~i~G~nGsGKSTLl~~l 306 (490)
T PRK10938 288 HWQIVGPNGAGKSTLLSLI 306 (490)
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 8999867888799999998
No 335
>TIGR00174 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) .; GO: 0004811 tRNA isopentenyltransferase activity, 0005524 ATP binding, 0008033 tRNA processing.
Probab=95.50 E-value=0.013 Score=37.48 Aligned_cols=66 Identities=27% Similarity=0.390 Sum_probs=38.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC-C---------CHH-HHH--HHCHHHCCCCHHHHHHHHHH
Q ss_conf 9995278666733799999999973389868999508875-8---------826-887--60002018981331289999
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFL-F---------PNA-VLT--ANNLMQRKGFPESYDSNKLL 151 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~-~---------~n~-~l~--~~~l~~rkGfPeS~D~~~L~ 151 (311)
+|=|+|++|||||-+|=.|.. ..++++|+.|+-. | |.. +++ .+-+++--+--|+|....+.
T Consensus 1 vi~i~GpTAvGKs~L~i~La~------~lnaEiI~~DS~qiYK~~dIgtaKp~~~e~~~ipH~l~Dildp~e~y~~~~F~ 74 (307)
T TIGR00174 1 VIVIMGPTAVGKSNLAIQLAK------KLNAEIISVDSMQIYKGMDIGTAKPSLQERKGIPHHLIDILDPSESYSAADFQ 74 (307)
T ss_pred CEEEEECCCCCHHHHHHHHHH------HCCEEEEECCCHHHHCCCCCCCCCCCHHHHCCCCCEEEECCCCCCCCCCHHHH
T ss_conf 967740885547789999887------68957874350232237875357889687534981585134712003708899
Q ss_pred HHHHH
Q ss_conf 99997
Q gi|254780827|r 152 TFLSD 156 (311)
Q Consensus 152 ~~L~~ 156 (311)
+.+.+
T Consensus 75 ~~~~~ 79 (307)
T TIGR00174 75 TQALN 79 (307)
T ss_pred HHHHH
T ss_conf 99999
No 336
>PTZ00243 ABC transporter; Provisional
Probab=95.49 E-value=0.013 Score=37.49 Aligned_cols=47 Identities=30% Similarity=0.416 Sum_probs=32.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC------------------CCEEEEEECCCCCCHHHHHH
Q ss_conf 995278666733799999999973389------------------86899950887588268876
Q gi|254780827|r 86 VGITGSVAVGKSTFARILCILLQQISN------------------FKVSLITTDGFLFPNAVLTA 132 (311)
Q Consensus 86 IGIAG~~asGKST~Ar~L~~lL~~~~~------------------~~V~lis~DgF~~~n~~l~~ 132 (311)
|||.|.+||||||+...|-.++.--.+ .++.+|++|-++++-..++.
T Consensus 1339 VGIVGRTGSGKSSLi~aLfRl~e~~~G~I~IDGvDIs~i~L~~LRs~isIIPQdPvLFsGTIR~N 1403 (1560)
T PTZ00243 1339 VGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQN 1403 (1560)
T ss_pred EEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHCCHHHHHHHCEEECCCCCEECCCHHHH
T ss_conf 99987987439999999970327788989997998202898999850848897882078668987
No 337
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.48 E-value=0.19 Score=29.56 Aligned_cols=44 Identities=18% Similarity=0.393 Sum_probs=29.1
Q ss_pred HCCCCCCCCCE-EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 16776678767-9995278666733799999999973389868999508
Q gi|254780827|r 74 LNLKEESKIPF-VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTD 121 (311)
Q Consensus 74 l~~~~~~k~Pf-IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~D 121 (311)
.|.+ ++++|. ..--+||+|||||.+|+.|...| |++ .-.+|..|
T Consensus 589 aGL~-dp~rPiGsFLFlGPTGVGKTElAK~LA~~L--F~~-e~~liriD 633 (857)
T PRK10865 589 AGLS-DPNRPIGSFLFLGPTGVGKTELCKALANFM--FDS-DDAMVRID 633 (857)
T ss_pred CCCC-CCCCCEEEEEEECCCCCCHHHHHHHHHHHH--HCC-HHHEEEEC
T ss_conf 3899-999973899986898788899999999998--389-33425625
No 338
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=95.46 E-value=0.011 Score=38.01 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 99952786667337999999999
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILL 107 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL 107 (311)
++||.|+.||||||+.+.|..++
T Consensus 39 ~~~liG~NGaGKSTLl~~l~gl~ 61 (265)
T PRK10575 39 VTGLIGHNGSGKSTLLKMLGRHQ 61 (265)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99999999980999999995688
No 339
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=95.46 E-value=0.011 Score=38.08 Aligned_cols=23 Identities=39% Similarity=0.380 Sum_probs=14.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 99952786667337999999999
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILL 107 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL 107 (311)
++|+.|.+||||||++++|.-++
T Consensus 31 ~~~LvG~NGaGKSTL~k~l~G~l 53 (490)
T PRK10938 31 SWAFVGSNGSGKSALARALAGEL 53 (490)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99999799977999999995699
No 340
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.45 E-value=0.02 Score=36.20 Aligned_cols=43 Identities=23% Similarity=0.419 Sum_probs=27.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-CCCEEEEEECC---CCCC-HHHH
Q ss_conf 999527866673379999999997338-98689995088---7588-2688
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQIS-NFKVSLITTDG---FLFP-NAVL 130 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~-~~~V~lis~Dg---F~~~-n~~l 130 (311)
.|-|+|++||||||| |..++.... +....++|..+ |.+. ++.|
T Consensus 127 LILVTGpTGSGKSTT---lAamId~iN~~~~~HIlTIEDPIE~vh~skksl 174 (353)
T COG2805 127 LILVTGPTGSGKSTT---LAAMIDYINKHKAKHILTIEDPIEYVHESKKSL 174 (353)
T ss_pred EEEEECCCCCCHHHH---HHHHHHHHHCCCCCCEEEECCCHHHHHCCHHHH
T ss_conf 699867999967879---999999984147751687237468650432766
No 341
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=95.45 E-value=0.011 Score=37.87 Aligned_cols=25 Identities=20% Similarity=0.583 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 9995278666733799999999973
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQ 109 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~ 109 (311)
|+||+|..||||||+++.|.-++..
T Consensus 280 i~gi~G~nGsGKsTL~~~l~Gl~~~ 304 (501)
T PRK10762 280 ILGVSGLMGAGRTELMKVLYGALPR 304 (501)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 8996678887688999998187677
No 342
>KOG2170 consensus
Probab=95.44 E-value=0.09 Score=31.80 Aligned_cols=67 Identities=15% Similarity=0.223 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999998999999999999999989999987167766787679995278666733799999999973
Q gi|254780827|r 42 STEIYKIYFPLSHLLLINVNSAKITCHQYNKFLNLKEESKIPFVVGITGSVAVGKSTFARILCILLQQ 109 (311)
Q Consensus 42 ~~ev~~iy~pl~~ll~~~~~~~~~~~~~~~~fl~~~~~~k~PfIIGIAG~~asGKST~Ar~L~~lL~~ 109 (311)
..+....+.-|.+.|--+--+.+..-.+...|+. .++.++|.++..-|.+|+||+-+|++|..-+-+
T Consensus 70 ~~~~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~-n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~ 136 (344)
T KOG2170 70 RNDLDGLEKDLARALFGQHLAKQLVVNALKSHWA-NPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYR 136 (344)
T ss_pred CCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHC-CCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 6560678999999863208799999999999862-899998758983089987564899999999875
No 343
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.43 E-value=0.13 Score=30.73 Aligned_cols=74 Identities=23% Similarity=0.222 Sum_probs=36.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEE-EECCCCCCHHHHH----HHCHHHCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 9995278666733799999999973389868999-5088758826887----6000201898133128999999997412
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLI-TTDGFLFPNAVLT----ANNLMQRKGFPESYDSNKLLTFLSDVKS 159 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~li-s~DgF~~~n~~l~----~~~l~~rkGfPeS~D~~~L~~~L~~lK~ 159 (311)
++-|+|.+|+||||++|.+.. ......+..+ -.+..+-+..-+. +-|+-. .+....--...+.++|..+.+
T Consensus 45 ~~lltGe~GtGKTtllr~l~~---~l~~~~~~~~~i~~~~l~~~~ll~~i~~~lg~~~-~~~~~~~~~~~l~~~L~~~~~ 120 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLK---RLDQERVVAAKLVNTRVDAEDLLRMVAADFGLET-EGRDKAALLRELEDFLIEQFA 120 (269)
T ss_pred EEEEECCCCCCHHHHHHHHHH---HCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCC-CCCCHHHHHHHHHHHHHHHHH
T ss_conf 599972998988999999998---4593454899976999999999999999859898-898999999999999999996
Q ss_pred CCC
Q ss_conf 664
Q gi|254780827|r 160 GKK 162 (311)
Q Consensus 160 G~~ 162 (311)
.+.
T Consensus 121 ~g~ 123 (269)
T TIGR03015 121 AGK 123 (269)
T ss_pred CCC
T ss_conf 699
No 344
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=95.42 E-value=0.009 Score=38.56 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=15.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 99952786667337999999999
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILL 107 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL 107 (311)
++||.|++||||||+++.|.-++
T Consensus 33 ~~~lvG~nGsGKSTL~~~l~Gl~ 55 (513)
T PRK13549 33 IVSLCGENGAGKSTLMKVLSGVY 55 (513)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99998999972999999995678
No 345
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=95.42 E-value=0.015 Score=37.14 Aligned_cols=24 Identities=25% Similarity=0.526 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
|+||.|+.||||||+.+.|.-++.
T Consensus 28 i~gliG~nGaGKSTL~~~i~Gl~~ 51 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGFLR 51 (236)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999998999739999999967987
No 346
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.40 E-value=0.027 Score=35.37 Aligned_cols=60 Identities=23% Similarity=0.257 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEE-EEEECC
Q ss_conf 9999999999899999871677667876799952786667337999999999733898689-995088
Q gi|254780827|r 56 LLINVNSAKITCHQYNKFLNLKEESKIPFVVGITGSVAVGKSTFARILCILLQQISNFKVS-LITTDG 122 (311)
Q Consensus 56 l~~~~~~~~~~~~~~~~fl~~~~~~k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~-lis~Dg 122 (311)
|++|+...+.|....-++ +.+ + |-++-|+|||||||+-|.|..+....++-+|+ -|..||
T Consensus 13 l~~yYg~~~aL~~i~l~i---~~~-~---VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g 73 (253)
T COG1117 13 LNLYYGDKHALKDINLDI---PKN-K---VTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDG 73 (253)
T ss_pred EEEEECCHHHHCCCCEEC---CCC-C---EEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEECC
T ss_conf 058987411231572214---578-0---699888988678889999875411566656878998888
No 347
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=95.38 E-value=0.024 Score=35.74 Aligned_cols=25 Identities=36% Similarity=0.582 Sum_probs=21.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 7999527866673379999999997
Q gi|254780827|r 84 FVVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 84 fIIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
=|.|+-|+.||||||+-+.|.-++.
T Consensus 32 ei~gllG~NGAGKTTllk~l~Gl~~ 56 (293)
T COG1131 32 EIFGLLGPNGAGKTTLLKILAGLLK 56 (293)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 5999989999989999999967977
No 348
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.38 E-value=0.022 Score=35.97 Aligned_cols=31 Identities=29% Similarity=0.401 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-CCCEEEE
Q ss_conf 999527866673379999999997338-9868999
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQIS-NFKVSLI 118 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~-~~~V~li 118 (311)
-|-|+|++||||||+.+ .++...+ +.++..|
T Consensus 27 nIlIsG~tGSGKTTll~---al~~~i~~~~rivti 58 (186)
T cd01130 27 NILISGGTGSGKTTLLN---ALLAFIPPDERIITI 58 (186)
T ss_pred CEEEECCCCCCHHHHHH---HHHHHCCCCCCEEEE
T ss_conf 89998999998999999---999613345645984
No 349
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=95.37 E-value=0.0073 Score=39.19 Aligned_cols=113 Identities=25% Similarity=0.259 Sum_probs=52.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CC----CCEEEEEECCCCCCHHH-HHH-HCHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99952786667337999999999733-89----86899950887588268-876-0002018981331289999999974
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQI-SN----FKVSLITTDGFLFPNAV-LTA-NNLMQRKGFPESYDSNKLLTFLSDV 157 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~-~~----~~V~lis~DgF~~~n~~-l~~-~~l~~rkGfPeS~D~~~L~~~L~~l 157 (311)
|+||.|+.||||||+.+++.-++..- +. ..+..++.+.-+.+.-. .+. .-.....|++..-..+...+.+...
T Consensus 52 ivgllG~NGaGKSTLlk~I~Gl~~P~~G~I~~~G~i~~~~~~~~l~~~lt~~eni~~~~~~~g~~~~~~~~~~~~~le~~ 131 (264)
T PRK13546 52 VIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFS 131 (264)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEEEEEECCCCCCCCEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 99999899861999999996798888747999988748850356574430001588899872424999999999999851
Q ss_pred HCCCCEEEEEC--CCCCCCCCCCCCEEEECCCCEEEE-ECCHHC
Q ss_conf 12664058740--443225658983699868965997-061003
Q gi|254780827|r 158 KSGKKKVAVPR--YSHSQYDILEGEYDTIIQPDILLI-EGINVL 198 (311)
Q Consensus 158 K~G~~~V~~Pv--Ysh~~~D~vp~~~~vi~~pdIIIv-EGi~vL 198 (311)
.-+. -...|+ ||.-.-.++.=.......|+|+|+ |-...|
T Consensus 132 ~l~~-~~~~~~~~LSgGqkqrl~lA~al~~~P~iLiLDEPts~L 174 (264)
T PRK13546 132 ELGE-FIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVG 174 (264)
T ss_pred CCHH-HHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 2055-651755347999999999999995699999995987548
No 350
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=95.37 E-value=0.012 Score=37.65 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
|+||.|..||||||+++.|.-++.
T Consensus 281 ivgivG~nGsGKSTL~k~L~Gl~~ 304 (501)
T PRK11288 281 IVGFFGLVGAGRSELMKLLYGATR 304 (501)
T ss_pred EEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 999756888648799998438748
No 351
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.36 E-value=0.012 Score=37.83 Aligned_cols=24 Identities=38% Similarity=0.524 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
|+||.|+.||||||+.+.|.-++.
T Consensus 28 i~~liG~nGaGKSTll~~l~G~~~ 51 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALFGLRP 51 (182)
T ss_pred EEEEECCCCCCCCHHHHHHCCCCC
T ss_conf 999988899992637787669867
No 352
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.36 E-value=0.033 Score=34.71 Aligned_cols=41 Identities=22% Similarity=0.212 Sum_probs=29.7
Q ss_pred CCCCEEEEEECCCCCCHHHHHH-HHHHHHHHCCCCCEEEEEECC
Q ss_conf 7876799952786667337999-999999733898689995088
Q gi|254780827|r 80 SKIPFVVGITGSVAVGKSTFAR-ILCILLQQISNFKVSLITTDG 122 (311)
Q Consensus 80 ~k~PfIIGIAG~~asGKST~Ar-~L~~lL~~~~~~~V~lis~Dg 122 (311)
-...-++-|+|++|+||||+|. .+...++ .+.++..+|++-
T Consensus 29 ~p~g~~~li~G~~G~GKt~~~~~f~~~~~~--~g~~~~~~~~ee 70 (241)
T PRK06067 29 IPFGSLILIEGENDTGKSVLSQQFVWGALN--QGKRGLAITTEN 70 (241)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHH--CCCEEEEEEECC
T ss_conf 779908999807998879999999999986--798299999428
No 353
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=95.35 E-value=0.0071 Score=39.28 Aligned_cols=44 Identities=30% Similarity=0.399 Sum_probs=31.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC--------------C--CCCEEEEEECCCCCCHH
Q ss_conf 99952786667337999999999733--------------8--98689995088758826
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQI--------------S--NFKVSLITTDGFLFPNA 128 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~--------------~--~~~V~lis~DgF~~~n~ 128 (311)
++||-|++||||||+.|.+.-++..- + ..++..+.++.-++|+-
T Consensus 30 ~~~llGpSGsGKSTLlr~iaGL~~p~sG~I~~~G~dv~~~~~~~r~Ig~vfQ~~~L~p~l 89 (352)
T PRK10851 30 MVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHM 89 (352)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCCCCCCEEEEECCCHHCCCC
T ss_conf 999999998469999999976999995699999999998993008489994071214588
No 354
>pfam01580 FtsK_SpoIIIE FtsK/SpoIIIE family. FtsK has extensive sequence similarity to wide variety of proteins from prokaryotes and plasmids, termed the FtsK/SpoIIIE family. This domain contains a putative ATP binding P-loop motif. It is found in the FtsK cell division protein from E. coli and the stage III sporulation protein E SpoIIIE which has roles in regulation of prespore specific gene expression in B. subtilis. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer.
Probab=95.35 E-value=0.084 Score=31.98 Aligned_cols=70 Identities=27% Similarity=0.231 Sum_probs=37.7
Q ss_pred EEEECCCCCCHHHHHHHH-HHHHHHCCCCCEEEEEECCCCCCHHHHHH-HCHHHCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 995278666733799999-99997338986899950887588268876-000201898133128999999997412
Q gi|254780827|r 86 VGITGSVAVGKSTFARIL-CILLQQISNFKVSLITTDGFLFPNAVLTA-NNLMQRKGFPESYDSNKLLTFLSDVKS 159 (311)
Q Consensus 86 IGIAG~~asGKST~Ar~L-~~lL~~~~~~~V~lis~DgF~~~n~~l~~-~~l~~rkGfPeS~D~~~L~~~L~~lK~ 159 (311)
+-|+|.+|||||++-+.+ ..++.......|.++-.|. . ...+.. .++-+. +..-+-|.+...++|..+..
T Consensus 41 ~Lv~G~tGsGKS~~l~~li~sl~~~~~p~~v~l~liD~--K-~~~~~~~~~~~h~-~~~~~~d~e~~~~~l~~l~~ 112 (202)
T pfam01580 41 LLIAGATGSGKSTFLNTLILSLAARHSPEEVRLYLIDP--K-GGELAALEDLPHL-LSAVATDPEDALSALRALVA 112 (202)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECC--C-CCCHHHHHHCCCC-CCCCCCCHHHHHHHHHHHHH
T ss_conf 89965899980099999999998737962069999748--9-6126767635654-43376899999999999999
No 355
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=95.35 E-value=0.015 Score=37.11 Aligned_cols=103 Identities=15% Similarity=0.272 Sum_probs=56.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--------------CC--CCCEEEEEECCCCCCHHHHHH---HCHHHCCCCHHHH
Q ss_conf 9995278666733799999999973--------------38--986899950887588268876---0002018981331
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQ--------------IS--NFKVSLITTDGFLFPNAVLTA---NNLMQRKGFPESY 145 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~--------------~~--~~~V~lis~DgF~~~n~~l~~---~~l~~rkGfPeS~ 145 (311)
+++|-|+|||||||+.+.+.-+.+- .+ +.+|..|-+|.=++|+-.-.+ -++.. ++.|..-
T Consensus 28 ~~~i~GpSG~GKSTlLr~iaGl~~p~~G~I~~~g~~i~~~~~~~R~ig~VfQ~~~LfP~ltV~eNI~~~l~~-~~~~~~e 106 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKL-RKVPKDE 106 (213)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHHH-CCCCHHH
T ss_conf 999999998809999999976999986399999999999997678878994587646547099999989998-5999899
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEE-------EECCCCEEEEEC
Q ss_conf 2899999999741266405874044322565898369-------986896599706
Q gi|254780827|r 146 DSNKLLTFLSDVKSGKKKVAVPRYSHSQYDILEGEYD-------TIIQPDILLIEG 194 (311)
Q Consensus 146 D~~~L~~~L~~lK~G~~~V~~PvYsh~~~D~vp~~~~-------vi~~pdIIIvEG 194 (311)
-.+...+.+..+.-. . ..-.|-+.. .-|+.+ .+..|+++++.=
T Consensus 107 ~~~~v~~~l~~~gl~--~-~~~~~P~~L---SGGqkQRVaiARAl~~~P~lLLlDE 156 (213)
T cd03301 107 IDERVREVAELLQIE--H-LLDRKPKQL---SGGQRQRVALGRAIVREPKVFLMDE 156 (213)
T ss_pred HHHHHHHHHHHCCCH--H-HHCCCHHHC---CHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 999999999875992--4-650995569---9999999999999875999899838
No 356
>PRK10908 cell division protein FtsE; Provisional
Probab=95.35 E-value=0.007 Score=39.32 Aligned_cols=24 Identities=29% Similarity=0.555 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
++||.|++||||||+.+.+.-++.
T Consensus 30 ~~~liG~nGsGKSTLl~~i~Gl~~ 53 (222)
T PRK10908 30 MAFLTGHSGAGKSTLLKLICGIER 53 (222)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999998079999999965999
No 357
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.34 E-value=0.0085 Score=38.76 Aligned_cols=27 Identities=37% Similarity=0.439 Sum_probs=22.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 679995278666733799999999973
Q gi|254780827|r 83 PFVVGITGSVAVGKSTFARILCILLQQ 109 (311)
Q Consensus 83 PfIIGIAG~~asGKST~Ar~L~~lL~~ 109 (311)
==|+||-|+.|+||||+.++|.-++..
T Consensus 25 GEiv~ilGpNGaGKSTllk~i~G~l~p 51 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLIP 51 (177)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 989999899999999999999688678
No 358
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=95.34 E-value=0.0071 Score=39.27 Aligned_cols=20 Identities=40% Similarity=0.590 Sum_probs=9.8
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99952786667337999999
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILC 104 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~ 104 (311)
++||.|++||||||+.++|.
T Consensus 32 ~~~lvG~nGaGKSTL~~~l~ 51 (501)
T PRK11288 32 VHALMGENGAGKSTLLKILS 51 (501)
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99998999981999999984
No 359
>PRK13974 thymidylate kinase; Provisional
Probab=95.34 E-value=0.11 Score=31.20 Aligned_cols=133 Identities=19% Similarity=0.189 Sum_probs=61.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC--CCCEEEEEEC--CCCCCHHHHHHHCHHHCC--C--CHHHH------H-HHH
Q ss_conf 999527866673379999999997338--9868999508--875882688760002018--9--81331------2-899
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQIS--NFKVSLITTD--GFLFPNAVLTANNLMQRK--G--FPESY------D-SNK 149 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~--~~~V~lis~D--gF~~~n~~l~~~~l~~rk--G--fPeS~------D-~~~ 149 (311)
.|-+-|.-||||||-++.|.+.|..-+ .....++.+- |- -+..+.-+.-+++.. . .|.+. | .+.
T Consensus 5 fIv~EGiDGsGKsTq~~~L~~~L~~~g~~~~~~~~~~~rePg~-t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~AdR~e~ 83 (212)
T PRK13974 5 FIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGG-TLLGKSLRELLLDTSKDNSPSPLAELLLYAADRAQH 83 (212)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC-CCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 9998899999899999999999986587535861577149999-806999999980665456888799999999999999
Q ss_pred HHHHHH-HHHCCCCEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHH
Q ss_conf 999999-7412664058740443225658983699868965997061003576545757774010002311577308899
Q gi|254780827|r 150 LLTFLS-DVKSGKKKVAVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADKR 228 (311)
Q Consensus 150 L~~~L~-~lK~G~~~V~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~~ 228 (311)
+.+.+. .|.+|+ .|-.=-|.+.+.--. +. ...-+.=.++.++-+....+ .=|+.||+|.|.+
T Consensus 84 ~~~~I~paL~~G~-iVI~DRY~~St~AYQ-g~---~~g~~~~~i~~l~~~~~~~~------------~PDlt~~LDv~~e 146 (212)
T PRK13974 84 VSKIIRPALENGD-WVISDRFSGSTLAYQ-GY---GRGLDLELIKNLESIATQGL------------SPDLTFFLEISVE 146 (212)
T ss_pred HHHHHHHHHHCCC-EEEECCCCCHHHHHH-HH---CCCCCHHHHHHHHHHHHCCC------------CCCEEEEECCCHH
T ss_conf 9999999983799-999788323599998-86---26999999999999874799------------9998999769758
Q ss_pred HHHHHHH
Q ss_conf 9887998
Q gi|254780827|r 229 DIHRWYL 235 (311)
Q Consensus 229 ~i~~wyi 235 (311)
...+|.-
T Consensus 147 ~a~~R~~ 153 (212)
T PRK13974 147 ESIRRRK 153 (212)
T ss_pred HHHHHHH
T ss_conf 8999884
No 360
>pfam05049 IIGP Interferon-inducible GTPase (IIGP). Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing.
Probab=95.34 E-value=0.023 Score=35.82 Aligned_cols=41 Identities=27% Similarity=0.367 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 9989999987167766787679995278666733799999999
Q gi|254780827|r 64 KITCHQYNKFLNLKEESKIPFVVGITGSVAVGKSTFARILCIL 106 (311)
Q Consensus 64 ~~~~~~~~~fl~~~~~~k~PfIIGIAG~~asGKST~Ar~L~~l 106 (311)
+........-|. ...++|.=|||+|.+|+|||||-..|+-+
T Consensus 18 ~~a~s~I~e~L~--~~~~~~lnIavtGesG~GkSsfINalRg~ 58 (375)
T pfam05049 18 QKVVSIIKKAIQ--EISSAPLKIAVTGDSGNGKSSFINALRGI 58 (375)
T ss_pred HHHHHHHHHHHH--HHHCCCEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999997--54438247998548998678999987478
No 361
>pfam08298 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.32 E-value=0.06 Score=32.97 Aligned_cols=54 Identities=24% Similarity=0.335 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 9999899999999999999998999998716776678767999527866673379999999997338
Q gi|254780827|r 45 IYKIYFPLSHLLLINVNSAKITCHQYNKFLNLKEESKIPFVVGITGSVAVGKSTFARILCILLQQIS 111 (311)
Q Consensus 45 v~~iy~pl~~ll~~~~~~~~~~~~~~~~fl~~~~~~k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~ 111 (311)
+-.++-++-++.+..-.+++ |.... |+ |+=.-|+||+||||+++.|+..+.+++
T Consensus 60 ffGme~~i~~iV~~~ksAA~----------g~e~~-kq--IllL~GPVGsGKSsl~e~LK~glE~y~ 113 (358)
T pfam08298 60 FFGMEETIERIVNYFRHAAQ----------GLEER-KQ--ILYLLGPVGGGKSSLAERLKKLLELVP 113 (358)
T ss_pred CCCHHHHHHHHHHHHHHHHH----------CCCCC-EE--EEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 00159999999999999972----------36721-05--899977898775899999998720586
No 362
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=95.32 E-value=0.0097 Score=38.34 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 99952786667337999999999
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILL 107 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL 107 (311)
++||-|+.||||||+.+.|.-++
T Consensus 32 ~~~iiGpNGaGKSTLlk~i~Gll 54 (262)
T PRK09984 32 MVALLGPSGSGKSTLLRHLSGLI 54 (262)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99999899960999999997567
No 363
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.32 E-value=0.014 Score=37.38 Aligned_cols=73 Identities=21% Similarity=0.277 Sum_probs=40.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--------------CC--CCCEEEEEECCCCCCHHHHH---HHCHHHCCCCHHHH
Q ss_conf 9995278666733799999999973--------------38--98689995088758826887---60002018981331
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQ--------------IS--NFKVSLITTDGFLFPNAVLT---ANNLMQRKGFPESY 145 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~--------------~~--~~~V~lis~DgF~~~n~~l~---~~~l~~rkGfPeS~ 145 (311)
+++|-|++||||||+-|.+.-+..- .+ ..++..|-+|.=++|+-.-. +-++.. +|.|.+-
T Consensus 28 ~~~iiGpSGsGKSTllr~i~Gl~~p~~G~I~~~g~~v~~~~~~~r~ig~VfQ~~~Lfp~ltV~~Nva~~l~~-~~~~~~e 106 (232)
T cd03300 28 FFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRL-KKLPKAE 106 (232)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHHH-CCCCHHH
T ss_conf 999999999839999999977999985399999999999995457756991488547789199998779987-6999999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 2899999999741
Q gi|254780827|r 146 DSNKLLTFLSDVK 158 (311)
Q Consensus 146 D~~~L~~~L~~lK 158 (311)
-.+...+.|..+.
T Consensus 107 ~~~rv~e~l~~v~ 119 (232)
T cd03300 107 IKERVAEALDLVQ 119 (232)
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999987589
No 364
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.32 E-value=0.025 Score=35.56 Aligned_cols=89 Identities=21% Similarity=0.365 Sum_probs=46.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 99952786667337999999999733898689995088758826887600020189813312899999999741266405
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTANNLMQRKGFPESYDSNKLLTFLSDVKSGKKKV 164 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~~~l~~rkGfPeS~D~~~L~~~L~~lK~G~~~V 164 (311)
||=|.||+.||||.+|..|. .+.+.+.+-+-|+.-| +.+..+|=..+++.-|..+ .++
T Consensus 1 iiLVtGG~rSGKS~~AE~la---~~~~~~~~YiAT~~~~---D~Em~~RI~~Hr~~R~~~w----------------~Ti 58 (169)
T cd00544 1 IILVTGGARSGKSRFAERLA---AELGGPVTYIATAEAF---DDEMAERIARHRKRRPAHW----------------RTI 58 (169)
T ss_pred CEEEECCCCCCHHHHHHHHH---HHCCCCCEEEECCCCC---CHHHHHHHHHHHHCCCCCC----------------EEE
T ss_conf 98997786636899999999---8459981999788988---9899999999996689996----------------699
Q ss_pred EEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCCCCC
Q ss_conf 87404432256589836998689659970610035765
Q gi|254780827|r 165 AVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQQNS 202 (311)
Q Consensus 165 ~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~ 202 (311)
+.|..= .+ ......+.++++|+.+-.+..+.
T Consensus 59 E~~~~l---~~----~l~~~~~~~~vLiDclt~wl~N~ 89 (169)
T cd00544 59 ETPRDL---VS----ALKELDPGDVVLIDCLTLWVTNL 89 (169)
T ss_pred ECCCCH---HH----HHHHCCCCCEEEEECHHHHHHHH
T ss_conf 634439---99----99855988859986078999998
No 365
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.31 E-value=0.0098 Score=38.33 Aligned_cols=103 Identities=23% Similarity=0.314 Sum_probs=49.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC--CCCHHHHHH------------HCHHHCCCCHH-----HH
Q ss_conf 999527866673379999999997338986899950887--588268876------------00020189813-----31
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGF--LFPNAVLTA------------NNLMQRKGFPE-----SY 145 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF--~~~n~~l~~------------~~l~~rkGfPe-----S~ 145 (311)
-|.|+|+||+||||+-+.++.|.+ |+.-+.+.--..+ +.|-+...+ ...-++--||. -+
T Consensus 31 ~iaitGPSG~GKStllk~va~Lis--p~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~~r~rr~ 108 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRP 108 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC--CCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHHHHCCCC
T ss_conf 488767887668899999981369--988528874733443485999999999972842146633223114257753688
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEE-------EECCCCEEEEEC
Q ss_conf 2899999999741266405874044322565898369-------986896599706
Q gi|254780827|r 146 DSNKLLTFLSDVKSGKKKVAVPRYSHSQYDILEGEYD-------TIIQPDILLIEG 194 (311)
Q Consensus 146 D~~~L~~~L~~lK~G~~~V~~PvYsh~~~D~vp~~~~-------vi~~pdIIIvEG 194 (311)
|......+|.++--+..-...++- +-.-|+.+ .-..|+|+++.-
T Consensus 109 dr~aa~~llar~~l~~~~L~k~it-----~lSGGE~QriAliR~Lq~~P~ILLLDE 159 (223)
T COG4619 109 DRAAALDLLARFALPDSILTKNIT-----ELSGGEKQRIALIRNLQFMPKILLLDE 159 (223)
T ss_pred CHHHHHHHHHHCCCCHHHHCCHHH-----HCCCHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 867999999870796466414023-----316607899999998630774687337
No 366
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=95.31 E-value=0.013 Score=37.38 Aligned_cols=103 Identities=21% Similarity=0.353 Sum_probs=56.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH--------------HC--CCCCEEEEEECCCCCCHHHHH---HHCHHHCCCCHHHH
Q ss_conf 999527866673379999999997--------------33--898689995088758826887---60002018981331
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ--------------QI--SNFKVSLITTDGFLFPNAVLT---ANNLMQRKGFPESY 145 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~--------------~~--~~~~V~lis~DgF~~~n~~l~---~~~l~~rkGfPeS~ 145 (311)
++++-|+|||||||+.|.+.-+.. .. ...++..|-+|.=+||+-.-. .-++ ..+|.|.+-
T Consensus 34 ~~~llGpSG~GKTTlLr~iaGl~~p~~G~I~~~g~~v~~~~~~~R~i~~VfQ~~aLfPh~tV~eNi~~~l-~~~~~~~~e 112 (351)
T PRK11432 34 MVTLLGPSGCGKTTVLRLVAGLEKPTSGQIFIDGEDVTKRSIQQRDICMVFQSYALFPHMSLGENVGYGL-KMLGVPKEE 112 (351)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCCCCCCCCCHHHHHHHHH-HHCCCCHHH
T ss_conf 9999999964999999999769998836999999999999954588699944887676680999997799-875999999
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEE-------EECCCCEEEEEC
Q ss_conf 2899999999741266405874044322565898369-------986896599706
Q gi|254780827|r 146 DSNKLLTFLSDVKSGKKKVAVPRYSHSQYDILEGEYD-------TIIQPDILLIEG 194 (311)
Q Consensus 146 D~~~L~~~L~~lK~G~~~V~~PvYsh~~~D~vp~~~~-------vi~~pdIIIvEG 194 (311)
-.+...+.|..+.-.. . .-.|-|.. .-|+.+ .+..|+++++.=
T Consensus 113 ~~~rv~e~l~~v~L~~--~-~~r~P~~L---SGGq~QRValARAL~~~P~vlLlDE 162 (351)
T PRK11432 113 RKQRVKEALELVDLAG--F-EDRYVDQI---SGGQQQRVALARALVLKPKVLLFDE 162 (351)
T ss_pred HHHHHHHHHHHCCCCC--H-HHCCHHHC---CHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 9999999997649966--1-45895578---9989999999999844998999868
No 367
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.30 E-value=0.027 Score=35.29 Aligned_cols=35 Identities=29% Similarity=0.392 Sum_probs=23.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-CCCEEEEEECC
Q ss_conf 999527866673379999999997338-98689995088
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQIS-NFKVSLITTDG 122 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~-~~~V~lis~Dg 122 (311)
+|=|+|+.||||||+.. .++...+ .....++|..+
T Consensus 3 liLitG~TGSGKTTtl~---all~~i~~~~~~~IiTiED 38 (198)
T cd01131 3 LVLVTGPTGSGKSTTLA---AMIDYINKNKTHHILTIED 38 (198)
T ss_pred EEEEECCCCCCHHHHHH---HHHHHHCCCCCCEEEEECC
T ss_conf 89998999997999999---9998536378836999647
No 368
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=95.29 E-value=0.017 Score=36.75 Aligned_cols=24 Identities=29% Similarity=0.391 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
|+||.|+.||||||+.+.|.-++.
T Consensus 33 i~~liGpnGaGKSTL~~~i~Gl~~ 56 (255)
T PRK11300 33 VVSLIGPNGAGKTTVFNCLTGFYK 56 (255)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999998999649999999967988
No 369
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=95.29 E-value=0.076 Score=32.29 Aligned_cols=49 Identities=24% Similarity=0.323 Sum_probs=35.8
Q ss_pred HHHHHCCCCCCCCCEEEEEE---CCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 99871677667876799952---78666733799999999973389868999508
Q gi|254780827|r 70 YNKFLNLKEESKIPFVVGIT---GSVAVGKSTFARILCILLQQISNFKVSLITTD 121 (311)
Q Consensus 70 ~~~fl~~~~~~k~PfIIGIA---G~~asGKST~Ar~L~~lL~~~~~~~V~lis~D 121 (311)
...|+..+.....+-||.|+ || |||||+|-.|..-|+.- +.+|-+|=.|
T Consensus 91 ~~~~~p~R~~g~~~~VIav~N~KGG--VGKTTtav~LA~~LA~~-G~RVLvIDLD 142 (387)
T TIGR03453 91 ALRYLPHRRGGEHLQVIAVTNFKGG--SGKTTTSAHLAQYLALR-GYRVLAIDLD 142 (387)
T ss_pred CCCCCCCCCCCCCCEEEEEECCCCC--CHHHHHHHHHHHHHHHC-CCCEEEEECC
T ss_conf 5545899999998808999788876--56999999999999977-9988999537
No 370
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.28 E-value=0.017 Score=36.64 Aligned_cols=24 Identities=42% Similarity=0.523 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
|+||.|+.||||||+.+.|.-++.
T Consensus 29 i~~liGpNGaGKSTLlk~l~Gl~~ 52 (271)
T PRK13638 29 VTGLVGANGCGKSTLFMNLSGLLR 52 (271)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999999999809999999966888
No 371
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=0.015 Score=37.14 Aligned_cols=95 Identities=16% Similarity=0.183 Sum_probs=57.9
Q ss_pred CCCHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHCCCCC-----------------------------C
Q ss_conf 468999-------99998999999999999999989999--987167766-----------------------------7
Q gi|254780827|r 39 PIDSTE-------IYKIYFPLSHLLLINVNSAKITCHQY--NKFLNLKEE-----------------------------S 80 (311)
Q Consensus 39 ~i~~~e-------v~~iy~pl~~ll~~~~~~~~~~~~~~--~~fl~~~~~-----------------------------~ 80 (311)
.+++.. .-|.|.||-.|=..|-......-... ..|+..+.. .
T Consensus 254 ~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~~~~l~~~y~~g 333 (559)
T COG4988 254 DLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDG 333 (559)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCEEEECCCC
T ss_conf 75089999999975988899999888999985036689899997259877788764321356897466602147855899
Q ss_pred -C---------CC-EEEEEECCCCCCHHHHHHHHHHHHHHC-CC-----------------CCEEEEEECCCCCCHHHHH
Q ss_conf -8---------76-799952786667337999999999733-89-----------------8689995088758826887
Q gi|254780827|r 81 -K---------IP-FVVGITGSVAVGKSTFARILCILLQQI-SN-----------------FKVSLITTDGFLFPNAVLT 131 (311)
Q Consensus 81 -k---------~P-fIIGIAG~~asGKST~Ar~L~~lL~~~-~~-----------------~~V~lis~DgF~~~n~~l~ 131 (311)
+ .| =.++|.|.||+||||+...|.-+++.. ++ ..+..|+++.|+++.+..+
T Consensus 334 ~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTire 413 (559)
T COG4988 334 KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRE 413 (559)
T ss_pred CCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHEEEECCCCCCCCCCHHH
T ss_conf 85566710675489679998899997899999984757777844888993100068778886724627998405641887
Q ss_pred HH
Q ss_conf 60
Q gi|254780827|r 132 AN 133 (311)
Q Consensus 132 ~~ 133 (311)
.-
T Consensus 414 Ni 415 (559)
T COG4988 414 NI 415 (559)
T ss_pred HH
T ss_conf 77
No 372
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=95.26 E-value=0.013 Score=37.43 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
.|||.|+.||||||+.++|.-++.
T Consensus 347 ~ialvG~NGsGKSTLlk~l~G~l~ 370 (632)
T PRK11147 347 KIALIGPNGCGKTTLLKLMLGQLQ 370 (632)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 799988988427799998606668
No 373
>pfam01202 SKI Shikimate kinase.
Probab=95.26 E-value=0.041 Score=34.14 Aligned_cols=27 Identities=33% Similarity=0.525 Sum_probs=20.6
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 666733799999999973389868999508875
Q gi|254780827|r 92 VAVGKSTFARILCILLQQISNFKVSLITTDGFL 124 (311)
Q Consensus 92 ~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~ 124 (311)
-||||||+++.|...|. ...+-+|.+.
T Consensus 1 mGsGKstigk~LA~~L~------~~fiD~D~~i 27 (158)
T pfam01202 1 MGAGKTTIGRLLAKALG------LPFIDTDQEI 27 (158)
T ss_pred CCCCHHHHHHHHHHHHC------CCEEECHHHH
T ss_conf 98977999999999969------9978872999
No 374
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=95.25 E-value=0.015 Score=37.00 Aligned_cols=103 Identities=17% Similarity=0.333 Sum_probs=56.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--------------C-C-CCCEEEEEECCCCCCHH-HHHH--HCHHHCCCCHHHH
Q ss_conf 9995278666733799999999973--------------3-8-98689995088758826-8876--0002018981331
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQ--------------I-S-NFKVSLITTDGFLFPNA-VLTA--NNLMQRKGFPESY 145 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~--------------~-~-~~~V~lis~DgF~~~n~-~l~~--~~l~~rkGfPeS~ 145 (311)
+++|-|++||||||+.+++.-|+.- . + ...+..|.+|.=+||+- +.+. .++ ..+|.|..-
T Consensus 32 ~~~llGpsG~GKTTllr~iaGl~~p~~G~I~~~g~~v~~~~~~~R~i~~vfQ~~~L~p~ltV~eni~~~l-~~~~~~~~~ 110 (358)
T PRK11650 32 FIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGL-KIRGMPKAE 110 (358)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEECCCCCCCCCCCHHHHHHHHH-HHCCCCHHH
T ss_conf 9999999863699999999769998862999999999999977875767725554487874878665578-762886467
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCE-------EEECCCCEEEEEC
Q ss_conf 289999999974126640587404432256589836-------9986896599706
Q gi|254780827|r 146 DSNKLLTFLSDVKSGKKKVAVPRYSHSQYDILEGEY-------DTIIQPDILLIEG 194 (311)
Q Consensus 146 D~~~L~~~L~~lK~G~~~V~~PvYsh~~~D~vp~~~-------~vi~~pdIIIvEG 194 (311)
..+...+.+..+.-. +.-++.-+.-.-|+. -.+..|+++++.=
T Consensus 111 ~~~rv~~~l~~l~l~------~~~~r~p~~LSGGq~QRvalARAL~~~P~vlllDE 160 (358)
T PRK11650 111 IEERVAEAARILELE------PLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDE 160 (358)
T ss_pred HHHHHHHHHHHHCCC------CHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 889999998752262------42248974789567899998357504998688738
No 375
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=95.25 E-value=0.015 Score=37.03 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 99952786667337999999999
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILL 107 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL 107 (311)
|+||.|+.||||||+.+.+.-++
T Consensus 33 i~~liG~NGaGKSTLl~~i~G~~ 55 (237)
T PRK11614 33 IVTLIGANGAGKTTLLGTLCGDP 55 (237)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99998799975999999996799
No 376
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=95.24 E-value=0.014 Score=37.22 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=20.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 7999527866673379999999997
Q gi|254780827|r 84 FVVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 84 fIIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
=|+||+|..||||||+++.|.-++.
T Consensus 290 Ei~gl~G~nGsGKsTL~~~l~Gl~~ 314 (510)
T PRK09700 290 EILGFAGLVGSGRTELMNCLFGVDK 314 (510)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 1899976888628899999819888
No 377
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=95.24 E-value=0.011 Score=37.99 Aligned_cols=24 Identities=46% Similarity=0.490 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
++||.|+.||||||+.+.|.-++.
T Consensus 30 i~~liGpNGaGKSTLlk~i~Gl~~ 53 (257)
T PRK13548 30 VVAILGPNGAGKSTLLRALSGELP 53 (257)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999999999879999999856757
No 378
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.21 E-value=0.017 Score=36.74 Aligned_cols=28 Identities=39% Similarity=0.544 Sum_probs=21.1
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 87679995278666733799999999973
Q gi|254780827|r 81 KIPFVVGITGSVAVGKSTFARILCILLQQ 109 (311)
Q Consensus 81 k~PfIIGIAG~~asGKST~Ar~L~~lL~~ 109 (311)
+.-=+|.|-||||||||||-|-+. +|..
T Consensus 30 ~~GdVisIIGsSGSGKSTfLRCiN-~LE~ 57 (256)
T COG4598 30 NAGDVISIIGSSGSGKSTFLRCIN-FLEK 57 (256)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH-HHCC
T ss_conf 789889996589986268999998-6348
No 379
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.21 E-value=0.083 Score=32.05 Aligned_cols=35 Identities=26% Similarity=0.304 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC--CCCCEEEEEEC
Q ss_conf 99952786667337999999999733--89868999508
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQI--SNFKVSLITTD 121 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~--~~~~V~lis~D 121 (311)
++-|+|++||||||+| +|-|+... .+.++--||.+
T Consensus 26 ~~LV~G~pGsGKTtla--~QfL~~Ga~~~GE~~lyitl~ 62 (501)
T PRK09302 26 PTLVSGTAGTGKTLFA--LQFLHNGIKSFGEPGVFVTFE 62 (501)
T ss_pred EEEEEECCCCCHHHHH--HHHHHHHHHHCCCCEEEEECC
T ss_conf 7999838999999999--999999988559978999857
No 380
>TIGR02068 cya_phycin_syn cyanophycin synthetase; InterPro: IPR011810 Cyanophycin is an insoluble storage polymer for carbon, nitrogen, and energy, found in most Cyanobacteria. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine. The polymer is made by this enzyme, cyanophycin synthetase, and degraded by cyanophycinase. Heterologously expressed cyanophycin synthetase in Escherichia coli produces a closely related, water-soluble polymer with some Arg replaced by Lys. It is unclear whether enzymes that produce soluble cyanophycin-like polymers in vivo in non-Cyanobacterial species should be designated as cyanophycin synthetase itself or as a related enzyme. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions .; GO: 0005524 ATP binding, 0016874 ligase activity, 0009059 macromolecule biosynthetic process.
Probab=95.21 E-value=0.039 Score=34.25 Aligned_cols=45 Identities=36% Similarity=0.658 Sum_probs=38.1
Q ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 7667876799952786667337999999999733898689995088758
Q gi|254780827|r 77 KEESKIPFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLF 125 (311)
Q Consensus 77 ~~~~k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~ 125 (311)
....+.| |++|||- =||||++|++..+|+..+ +.|-+-||||-|-
T Consensus 483 ~~~grIP-iV~vTGT--NGKTt~~RL~Ahil~~~G-~~vG~T~tDG~Yi 527 (876)
T TIGR02068 483 EDDGRIP-IVAVTGT--NGKTTTTRLVAHILKQTG-KVVGMTTTDGVYI 527 (876)
T ss_pred CCCCCEE-EEEEECC--CCCHHHHHHHHHHHHHCC-CEEEEEECCCEEE
T ss_conf 7898344-8887268--983557889999998569-8276420376775
No 381
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.21 E-value=0.0098 Score=38.33 Aligned_cols=24 Identities=38% Similarity=0.558 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
++||.|+.||||||+.+.|.-++.
T Consensus 29 ~~~l~G~NGaGKSTLl~~l~Gl~~ 52 (204)
T PRK13538 29 LVQIEGPNGAGKTSLLRILAGLAR 52 (204)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999999999859999999976888
No 382
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=95.21 E-value=0.0097 Score=38.35 Aligned_cols=24 Identities=38% Similarity=0.520 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
+|||.|..||||||+.+.|.-++.
T Consensus 352 ~iaivG~NGsGKSTLlk~l~G~~~ 375 (556)
T PRK11819 352 IVGIIGPNGAGKSTLFKMITGQEQ 375 (556)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 478988987758899999838656
No 383
>PRK04328 hypothetical protein; Provisional
Probab=95.19 E-value=0.041 Score=34.12 Aligned_cols=38 Identities=26% Similarity=0.218 Sum_probs=27.0
Q ss_pred CCEEEEEECCCCCCHHHHHH-HHHHHHHHCCCCCEEEEEEC
Q ss_conf 76799952786667337999-99999973389868999508
Q gi|254780827|r 82 IPFVVGITGSVAVGKSTFAR-ILCILLQQISNFKVSLITTD 121 (311)
Q Consensus 82 ~PfIIGIAG~~asGKST~Ar-~L~~lL~~~~~~~V~lis~D 121 (311)
..=++-|+|++|+||||+|- .+..-++ .+.++..+|.+
T Consensus 23 ~gs~~Lv~G~pGtGKT~la~qFl~~g~~--~GE~~lyis~e 61 (250)
T PRK04328 23 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ--MGEPGIYVALE 61 (250)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHH--CCCCEEEEEEE
T ss_conf 9969999828999989999999999987--69977999972
No 384
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.18 E-value=0.021 Score=36.09 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
++||.|+.||||||+-|+|.-++.
T Consensus 39 ~~~l~GpNGaGKTTLlr~l~Gl~~ 62 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLAGLLH 62 (214)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999999999879999999976977
No 385
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit; InterPro: IPR012804 Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in Salmonella typhimurium) , . The corresponding cobalt chelatases are not homologous. Cobaltochelatase is responsible for the insertion of cobalt into the corrin ring of coenzyme B12 during its biosynthesis. Two versions have been well described. CbiK/CbiX is a monomeric, anaerobic version which acts early in the biosynthesis (IPR010388 from INTERPRO). CobNST is a trimeric, ATP-dependent, aerobic version which acts late in the biosynthesis, (IPR011953 from INTERPRO, IPR006537 from INTERPRO, IPR006538 from INTERPRO) . The two pathways differ in the point of cobalt insertion during corrin ring formation . There are apparently a number of variations on these two pathways, where the major differences seem to be concerned with the process of ring contraction . Cobaltochelatase shows similarities with magnesium chelatase, which is also a complex ATP-dependent enzyme made up of two separable components. However, unlike the situation in cobaltochelatase, one of these two components is membrane bound in magnesium chelatase . .
Probab=95.17 E-value=0.049 Score=33.61 Aligned_cols=22 Identities=50% Similarity=0.437 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 9952786667337999999999
Q gi|254780827|r 86 VGITGSVAVGKSTFARILCILL 107 (311)
Q Consensus 86 IGIAG~~asGKST~Ar~L~~lL 107 (311)
+=|+|.=|+||||.||-|..||
T Consensus 28 VLirG~KGTAKSTaaR~L~~LL 49 (688)
T TIGR02442 28 VLIRGEKGTAKSTAARGLAALL 49 (688)
T ss_pred EEEECCCCCHHHHHHHHHHHHC
T ss_conf 7887788862789888487616
No 386
>TIGR00345 arsA arsenite-activated ATPase (arsA); InterPro: IPR003348 This ATPase is involved in the removal of arsenate, antimonite, and arsenate from the cell. In Escherichia coli an anion-translocating ATPase has been identified as the product of the arsenical resistance operon of resistance plasmid R773. This ATP-driven oxyanion pump catalyses extrusion of the oxyanions arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance . The ArsA and ArsB proteins form a membrane-bound pump that functions as an oxyanion-translocating ATPase. The ArsC protein is an arsenate reductase that reduces arsenate to arsenite, which is subsequently pumped out of the cell .; GO: 0005524 ATP binding, 0006820 anion transport, 0016020 membrane.
Probab=95.17 E-value=0.025 Score=35.51 Aligned_cols=37 Identities=32% Similarity=0.346 Sum_probs=29.9
Q ss_pred EECCCCCCHHHHHHHHHHHHHHC-CCCCEEEEEECCCC
Q ss_conf 52786667337999999999733-89868999508875
Q gi|254780827|r 88 ITGSVAVGKSTFARILCILLQQI-SNFKVSLITTDGFL 124 (311)
Q Consensus 88 IAG~~asGKST~Ar~L~~lL~~~-~~~~V~lis~DgF~ 124 (311)
+.|==||||||.|-....-|++- |+++|-+||||==|
T Consensus 2 ~gGKGGVGKTt~SaAtA~~lAe~qPGkkvLl~STDPAH 39 (330)
T TIGR00345 2 FGGKGGVGKTTISAATAIRLAEQQPGKKVLLVSTDPAH 39 (330)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCH
T ss_conf 77878823888999999999851899779998408600
No 387
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=95.17 E-value=0.041 Score=34.13 Aligned_cols=36 Identities=31% Similarity=0.410 Sum_probs=31.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 9995278666733799999999973389868999508
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTD 121 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~D 121 (311)
+|+|+|-=||||||+|=-|..-|++.+ .+|-+|=.|
T Consensus 3 ~Iai~GKGGVGKTTtavNLA~aLa~~G-kkVlliDaD 38 (270)
T cd02040 3 QIAIYGKGGIGKSTTTQNLSAALAEMG-KKVMIVGCD 38 (270)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-CEEEEECCC
T ss_conf 899979985778999999999999879-949998657
No 388
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.15 E-value=0.017 Score=36.68 Aligned_cols=24 Identities=46% Similarity=0.668 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
++||.|++||||||+.+.+.-++.
T Consensus 27 ~~~liG~nGsGKTTLl~~i~G~~~ 50 (180)
T cd03214 27 IVGILGPNGAGKSTLLKTLAGLLK 50 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999998999889999999957989
No 389
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.15 E-value=0.01 Score=38.14 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
++||.|+.||||||+.+.|.-++.
T Consensus 32 i~~LiGpNGaGKSTLlk~I~Gl~~ 55 (251)
T PRK09544 32 ILTLLGPNGAGKSTLVRVVLGLVA 55 (251)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999998999889999999966888
No 390
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.15 E-value=0.028 Score=35.22 Aligned_cols=34 Identities=26% Similarity=0.259 Sum_probs=23.8
Q ss_pred EEECCCCCCHHHHHH-HHHHHHHHCCCCCEEEEEECC
Q ss_conf 952786667337999-999999733898689995088
Q gi|254780827|r 87 GITGSVAVGKSTFAR-ILCILLQQISNFKVSLITTDG 122 (311)
Q Consensus 87 GIAG~~asGKST~Ar-~L~~lL~~~~~~~V~lis~Dg 122 (311)
=|+|++|+||||+|- .+..-++ .+.+|.-+|++-
T Consensus 3 Li~G~pGsGKT~~a~qfl~~~a~--~ge~~lyis~eE 37 (187)
T cd01124 3 LLSGGPGTGKTTFALQFLYAGLA--RGEPGLYVTLEE 37 (187)
T ss_pred EEEECCCCCHHHHHHHHHHHHHH--CCCCEEEEEECC
T ss_conf 58768999999999999999987--699789999507
No 391
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein; InterPro: IPR012693 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.; GO: 0005524 ATP binding, 0015416 phosphonate transmembrane-transporting ATPase activity, 0015716 phosphonate transport, 0016020 membrane.
Probab=95.14 E-value=0.016 Score=36.87 Aligned_cols=143 Identities=22% Similarity=0.344 Sum_probs=67.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH-HCCCCCEE------EEEECCCCCCHH----HHHH-H----------C--------
Q ss_conf 999527866673379999999997-33898689------995088758826----8876-0----------0--------
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ-QISNFKVS------LITTDGFLFPNA----VLTA-N----------N-------- 134 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~-~~~~~~V~------lis~DgF~~~n~----~l~~-~----------~-------- 134 (311)
+++|=|+||+||||+=|-|-.|-. .- +.=- -|+.||.=-.+. +|.. | +
T Consensus 30 ~~~~IG~SGAGKSTLLR~iNrL~~Gdk--~~~Geilidf~i~~~g~~i~~~~~~k~LR~~R~~igMIFQ~yNLi~R~~VL 107 (253)
T TIGR02315 30 FVAVIGPSGAGKSTLLRCINRLVEGDK--PSSGEILIDFSILLEGTDITKLRRGKKLRKLRRKIGMIFQHYNLIERLTVL 107 (253)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCC--CCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCEEHHHHCCCCCHHH
T ss_conf 799973788726799987753026888--876508988888872731876754889999976435011010237830366
Q ss_pred ---HHHCCCC----------HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEE--------EECCCCEEEE-
Q ss_conf ---0201898----------13312899999999741266405874044322565898369--------9868965997-
Q gi|254780827|r 135 ---LMQRKGF----------PESYDSNKLLTFLSDVKSGKKKVAVPRYSHSQYDILEGEYD--------TIIQPDILLI- 192 (311)
Q Consensus 135 ---l~~rkGf----------PeS~D~~~L~~~L~~lK~G~~~V~~PvYsh~~~D~vp~~~~--------vi~~pdIIIv- 192 (311)
|+.|-|+ =..-|.+.-++.|.++ -+-.|-+..-|-..|..+ ...+|+||+.
T Consensus 108 ~NVL~GRLg~~~~~~~~~~~F~~~dk~~Al~~L~rV-------Gl~~~A~~RaD~LSGGQQQRVaIARAL~Q~P~lILAD 180 (253)
T TIGR02315 108 ENVLHGRLGYKSTWRSLLGRFSEEDKERALSLLERV-------GLADKAYQRADQLSGGQQQRVAIARALAQQPKLILAD 180 (253)
T ss_pred HHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHC-------CHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEC
T ss_conf 764214321450345563258998999999876523-------8788986521321585116899998636899589704
Q ss_pred ECCHHCCCCCCCCCCCCCEEECCC------CCEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf 061003576545757774010002------31157730889998879988788876
Q gi|254780827|r 193 EGINVLQQNSLSDNQKATPMISDF------LDFSIYIDADKRDIHRWYLNRFLKLR 242 (311)
Q Consensus 193 EGi~vL~~~~l~~~~~~~~~vsD~------fD~sIyVDad~~~i~~wyi~Rf~~lr 242 (311)
|=+=-|=| . .....+..| .-.+|=|.--.=++-+.|-+|-.-++
T Consensus 181 EPiASLDP-~-----~s~~VMd~lk~In~e~GIT~i~NLH~VdlA~~Y~dRivGL~ 230 (253)
T TIGR02315 181 EPIASLDP-K-----TSKQVMDYLKRINKEDGITVIVNLHQVDLAKKYADRIVGLK 230 (253)
T ss_pred CCCCCCCH-H-----HHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHH
T ss_conf 88433675-6-----78999999999887769779997461787887633776666
No 392
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=95.12 E-value=0.011 Score=37.88 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=10.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q ss_conf 9995278666733799999999
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCIL 106 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~l 106 (311)
|+||.|++||||||+++.|.-+
T Consensus 32 i~~liG~nGaGKSTL~~~l~G~ 53 (501)
T PRK10762 32 VMALVGENGAGKSTLMKVLTGI 53 (501)
T ss_pred EEEEECCCCCHHHHHHHHHHCC
T ss_conf 9999899998299999999579
No 393
>pfam00931 NB-ARC NB-ARC domain.
Probab=95.11 E-value=0.016 Score=36.82 Aligned_cols=23 Identities=43% Similarity=0.497 Sum_probs=19.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 76799952786667337999999
Q gi|254780827|r 82 IPFVVGITGSVAVGKSTFARILC 104 (311)
Q Consensus 82 ~PfIIGIAG~~asGKST~Ar~L~ 104 (311)
---||||.|-.|+||||+|+.+-
T Consensus 18 ~~~vI~I~G~gGiGKTtLA~~v~ 40 (285)
T pfam00931 18 NLGVVGIVGMGGVGKTTLAKQIY 40 (285)
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
T ss_conf 95399988999563999999997
No 394
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.11 E-value=0.022 Score=35.91 Aligned_cols=128 Identities=20% Similarity=0.200 Sum_probs=60.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEE-EEECCCCCCHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 767999527866673379999999997338986899-9508875882688760002018981331289999999974126
Q gi|254780827|r 82 IPFVVGITGSVAVGKSTFARILCILLQQISNFKVSL-ITTDGFLFPNAVLTANNLMQRKGFPESYDSNKLLTFLSDVKSG 160 (311)
Q Consensus 82 ~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~l-is~DgF~~~n~~l~~~~l~~rkGfPeS~D~~~L~~~L~~lK~G 160 (311)
...+|-|+|+|||||||+.+ .|+++. +....+ .|| .+-..-|..|. -|-+-.-.+|...+..|
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k---~L~~~~-~l~~SVS~TT----R~pR~gEv~G~--------dY~Fvs~~EF~~~i~~~ 66 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVK---ALLEDD-KLRFSVSATT----RKPRPGEVDGV--------DYFFVTEEEFEELIERD 66 (191)
T ss_pred CCEEEEEECCCCCCHHHHHH---HHHHHC-CEEEEEEECC----CCCCCCCCCCC--------EEEECCHHHHHHHHHCC
T ss_conf 86399998998888899999---998634-9379998526----79999875780--------24757799999987568
Q ss_pred CCEEEEECCCCCCC-CCCCCCEEEE-C-CCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCH-HHHHHHHHH
Q ss_conf 64058740443225-6589836998-6-896599706100357654575777401000231157730889-998879988
Q gi|254780827|r 161 KKKVAVPRYSHSQY-DILEGEYDTI-I-QPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADK-RDIHRWYLN 236 (311)
Q Consensus 161 ~~~V~~PvYsh~~~-D~vp~~~~vi-~-~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~-~~i~~wyi~ 236 (311)
+- +++-.|.=.-| ...+.-.+.. . ..=|+.+|.--++|.....+ -=.+||+.+|. +.+++|...
T Consensus 67 ~f-LE~a~~~gnyYGT~~~~ve~~~~~G~~vildId~qGa~qvk~~~p-----------~~v~IFi~pPs~eeL~~RL~~ 134 (191)
T COG0194 67 EF-LEWAEYHGNYYGTSREPVEQALAEGKDVILDIDVQGALQVKKKMP-----------NAVSIFILPPSLEELERRLKG 134 (191)
T ss_pred CC-EEEEEECCCCCCCCHHHHHHHHHCCCEEEEEEEHHHHHHHHHHCC-----------CEEEEEECCCCHHHHHHHHHC
T ss_conf 74-788777197324868899999866990899985399999997499-----------969999759999999999971
Q ss_pred H
Q ss_conf 7
Q gi|254780827|r 237 R 237 (311)
Q Consensus 237 R 237 (311)
|
T Consensus 135 R 135 (191)
T COG0194 135 R 135 (191)
T ss_pred C
T ss_conf 5
No 395
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=95.11 E-value=0.011 Score=38.09 Aligned_cols=23 Identities=35% Similarity=0.408 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 99952786667337999999999
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILL 107 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL 107 (311)
.+||.|..||||||+.++|.-.+
T Consensus 31 ~vgLVG~NGsGKSTLl~iL~G~~ 53 (632)
T PRK11147 31 RVCLVGRNGAGKSTLMKILSGEV 53 (632)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99999999987999999983899
No 396
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=95.11 E-value=0.016 Score=36.96 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
++||-|++||||||+.+.|.-++.
T Consensus 29 ~~aliG~nGaGKSTLl~~i~G~l~ 52 (273)
T PRK13547 29 VTALLGRNGAGKSTLLKVLAGELT 52 (273)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999999769999999956788
No 397
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=95.10 E-value=0.011 Score=37.96 Aligned_cols=107 Identities=24% Similarity=0.282 Sum_probs=49.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE--------CCCCCCHH-HHHHHC-HHHCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997338986899950--------88758826-887600-02018981331289999999
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITT--------DGFLFPNA-VLTANN-LMQRKGFPESYDSNKLLTFL 154 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~--------DgF~~~n~-~l~~~~-l~~rkGfPeS~D~~~L~~~L 154 (311)
|+||.|+.||||||+.+++.-++..- .-.|.+-.. .+| +|+- ..+.-. ...-+|.+.....+...+.+
T Consensus 50 ivgilG~NGaGKSTLl~~i~Gl~~p~-~G~I~i~G~~~~~~~~~~~~-~p~ltv~enl~~~~~~~g~~~~~~~~~~~~~l 127 (224)
T cd03220 50 RIGLIGRNGAGKSTLLRLLAGIYPPD-SGTVTVRGRVSSLLGLGGGF-NPELTGRENIYLNGRLLGLSRKEIDEKIDEII 127 (224)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCC-CCEEEECCEECCCCCCCEEC-CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 99999799981999999997587778-77699998984301574203-99882999999999982965899999999999
Q ss_pred HHHHCCCCEEEEEC--CCCCCCCCCCCCEEEECCCCEEEEEC
Q ss_conf 97412664058740--44322565898369986896599706
Q gi|254780827|r 155 SDVKSGKKKVAVPR--YSHSQYDILEGEYDTIIQPDILLIEG 194 (311)
Q Consensus 155 ~~lK~G~~~V~~Pv--Ysh~~~D~vp~~~~vi~~pdIIIvEG 194 (311)
..+.-+ .....|+ ||.-.-.++.=.......|+|+|+.-
T Consensus 128 ~~~~L~-~~~~~~~~~LSgG~kqRl~iA~al~~~P~illLDE 168 (224)
T cd03220 128 EFSELG-DFIDLPVKTYSSGMKARLAFAIATALEPDILLIDE 168 (224)
T ss_pred HHHCCH-HHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 863675-56538665469999999999999966999999918
No 398
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.09 E-value=0.034 Score=34.66 Aligned_cols=34 Identities=38% Similarity=0.468 Sum_probs=27.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 99952786667337999999999733898689995
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLIT 119 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis 119 (311)
+|.++|.-||||||+|-.|...|++ .+.+|.++-
T Consensus 1 ~i~~~~~kGvGKTT~a~~La~~la~-~g~~Vl~vD 34 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK-RGKRVLLID 34 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEC
T ss_conf 9898589977689999999999998-899699986
No 399
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.07 E-value=0.012 Score=37.81 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
++||-|+.||||||+.+.+.-++.
T Consensus 27 ~~~liGpNGaGKSTllk~i~Gl~~ 50 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGLLK 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999999999869999999976878
No 400
>KOG3347 consensus
Probab=95.07 E-value=0.019 Score=36.43 Aligned_cols=64 Identities=30% Similarity=0.421 Sum_probs=35.3
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCHHHCCCCHHH-----HHHHHHHHHHH
Q ss_conf 8767999527866673379999999997338986899950887588268876000201898133-----12899999999
Q gi|254780827|r 81 KIPFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTANNLMQRKGFPES-----YDSNKLLTFLS 155 (311)
Q Consensus 81 k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~~~l~~rkGfPeS-----~D~~~L~~~L~ 155 (311)
..|= |-|+|.+|+||||+|..|...+. ..-|.+-++- ++.++.. |+-|. +|-+.++..|.
T Consensus 6 ~~PN-ILvtGTPG~GKstl~~~lae~~~------~~~i~isd~v------kEn~l~~--gyDE~y~c~i~DEdkv~D~Le 70 (176)
T KOG3347 6 ERPN-ILVTGTPGTGKSTLAERLAEKTG------LEYIEISDLV------KENNLYE--GYDEEYKCHILDEDKVLDELE 70 (176)
T ss_pred CCCC-EEEECCCCCCCHHHHHHHHHHHC------CCEEEHHHHH------HHHCCHH--CCCCCCCCCCCCHHHHHHHHH
T ss_conf 3788-79867999880259999999739------8567455677------6611021--023223675456789998888
Q ss_pred HHHC
Q ss_conf 7412
Q gi|254780827|r 156 DVKS 159 (311)
Q Consensus 156 ~lK~ 159 (311)
.+-.
T Consensus 71 ~~m~ 74 (176)
T KOG3347 71 PLMI 74 (176)
T ss_pred HHHH
T ss_conf 9875
No 401
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=95.07 E-value=0.038 Score=34.37 Aligned_cols=26 Identities=42% Similarity=0.319 Sum_probs=22.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 76799952786667337999999999
Q gi|254780827|r 82 IPFVVGITGSVAVGKSTFARILCILL 107 (311)
Q Consensus 82 ~PfIIGIAG~~asGKST~Ar~L~~lL 107 (311)
.|+++-|+|-+||||||+.+.++..+
T Consensus 3 ~~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 3 GRKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 75599997579887266999999877
No 402
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=95.06 E-value=0.016 Score=36.86 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
.|||.|+.||||||+.++|.-++.
T Consensus 340 riaIvG~NGsGKSTLlk~L~G~l~ 363 (638)
T PRK10636 340 RIGLLGRNGAGKSTLIKLLAGELA 363 (638)
T ss_pred EEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 799974787138899999728878
No 403
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=95.03 E-value=0.02 Score=36.21 Aligned_cols=24 Identities=38% Similarity=0.517 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
++||-|+.||||||+.+.+.-++.
T Consensus 35 ~~~iiGpNGaGKSTLlk~i~Gll~ 58 (265)
T PRK10253 35 FTAIIGPNGCGKSTLLRTLSRLMT 58 (265)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999988399999999974988
No 404
>PRK04195 replication factor C large subunit; Provisional
Probab=95.03 E-value=0.078 Score=32.21 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 99952786667337999999999
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILL 107 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL 107 (311)
.+=++|++|+||||+|+.|..-+
T Consensus 42 ~lLL~GPpGvGKTT~a~~lAk~~ 64 (403)
T PRK04195 42 ALLLYGPPGVGKTSLAHALANDY 64 (403)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 69988939987999999999984
No 405
>PRK13544 consensus
Probab=95.02 E-value=0.037 Score=34.40 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=20.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 7999527866673379999999997
Q gi|254780827|r 84 FVVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 84 fIIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
=++||.|+.||||||+-+.|.-++.
T Consensus 28 ei~~l~G~NGsGKSTLl~~i~Gl~~ 52 (208)
T PRK13544 28 SLTLVIGNNGSGKTSLLRLLAGLIP 52 (208)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 4999999999989999999958806
No 406
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=95.02 E-value=0.041 Score=34.10 Aligned_cols=36 Identities=28% Similarity=0.297 Sum_probs=31.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 9995278666733799999999973389868999508
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTD 121 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~D 121 (311)
-|.|.|-=|+||||||--|.+-|+..+ .+|-+|-.|
T Consensus 3 ~ia~yGKGGVGKTTTavNLAaALA~~G-kkVLlID~D 38 (292)
T PRK13230 3 QIAFYGKGGIGKSTTVCNLAAALSKSG-KKVIVVGCD 38 (292)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-CEEEEECCC
T ss_conf 799917998578989999999999879-959997767
No 407
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=95.01 E-value=0.021 Score=36.07 Aligned_cols=24 Identities=33% Similarity=0.574 Sum_probs=20.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 679995278666733799999999
Q gi|254780827|r 83 PFVVGITGSVAVGKSTFARILCIL 106 (311)
Q Consensus 83 PfIIGIAG~~asGKST~Ar~L~~l 106 (311)
|.=|||+|.+|+||||+-..|+-+
T Consensus 1 pl~iaVtGesGaGKSSfINAlRGl 24 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGV 24 (197)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 917999558998689999998688
No 408
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.01 E-value=0.037 Score=34.40 Aligned_cols=33 Identities=24% Similarity=0.373 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 999527866673379999999997338986899950
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITT 120 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~ 120 (311)
+|-|+|++||||||+. ..+|.........++|.
T Consensus 82 lilitGptGSGKtTtl---~a~l~~~~~~~~~i~ti 114 (264)
T cd01129 82 IILVTGPTGSGKTTTL---YSALSELNTPEKNIITV 114 (264)
T ss_pred EEEEECCCCCCHHHHH---HHHHHHHCCCCCEEEEE
T ss_conf 8999789999779999---99998643688508998
No 409
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.00 E-value=0.013 Score=37.52 Aligned_cols=25 Identities=36% Similarity=0.432 Sum_probs=21.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 7999527866673379999999997
Q gi|254780827|r 84 FVVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 84 fIIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
=|+||.|+.||||||+.+.|.-++.
T Consensus 27 ei~~lvG~nGaGKSTl~~~i~Gl~~ 51 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYK 51 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 8999998899899999999957768
No 410
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.98 E-value=0.027 Score=35.32 Aligned_cols=34 Identities=21% Similarity=0.282 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHH-HHHHHCCCCCEEEE
Q ss_conf 99952786667337999999-99973389868999
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILC-ILLQQISNFKVSLI 118 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~-~lL~~~~~~~V~li 118 (311)
=|-|+|++||||||+.+.|. .+...-|..++..|
T Consensus 151 nilI~G~TgsGKTTll~all~~i~~~~p~eRivtI 185 (320)
T PRK13894 151 NILVIGGTGSGKTTLVNAIINEMVIQDPTERVFII 185 (320)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 58998588865689999998632026952017752
No 411
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=94.98 E-value=0.044 Score=33.93 Aligned_cols=39 Identities=23% Similarity=0.223 Sum_probs=33.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 999527866673379999999997338986899950887
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGF 123 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF 123 (311)
.|.|-|--|+|||||+--|.+-|++....+|-+|-.|-=
T Consensus 4 ~iaiyGKGGIGKSTTt~NLaaALA~l~GkrVl~IgcDPk 42 (275)
T PRK13233 4 KIAIYGKGGIGKSTTTQNTAAAMAHFHDKKVFIHGCDPK 42 (275)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 899989985446545999999999647988999797887
No 412
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=94.98 E-value=0.018 Score=36.50 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 99952786667337999999999
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILL 107 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL 107 (311)
++||.|+.||||||+.+.|.-++
T Consensus 25 ~v~iiGpNGaGKSTLlk~i~Gl~ 47 (245)
T PRK03695 25 ILHLVGPNGAGKSTLLARMAGLL 47 (245)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99999789941999999984668
No 413
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=94.97 E-value=0.022 Score=36.00 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 99952786667337999999999
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILL 107 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL 107 (311)
++||-|++||||||+.++|.-++
T Consensus 47 ~~~llGpsGsGKSTllr~i~Gl~ 69 (377)
T PRK11607 47 IFALLGASGCGKSTLLRMLAGFE 69 (377)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99999999848999999997699
No 414
>pfam00142 Fer4_NifH 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family.
Probab=94.94 E-value=0.053 Score=33.35 Aligned_cols=37 Identities=27% Similarity=0.334 Sum_probs=32.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 99952786667337999999999733898689995088
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDG 122 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~Dg 122 (311)
+|.|+|-=||||||+|--|..-|++.+ .+|-+|=.|-
T Consensus 2 ~iai~GKGGVGKTTtsvNLA~aLA~~G-krVlliDaD~ 38 (269)
T pfam00142 2 KIAIYGKGGIGKSTTSQNTSAALAEMG-KKVLIVGCDP 38 (269)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-CEEEEECCCC
T ss_conf 589989997688999999999999879-9099984589
No 415
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.93 E-value=0.051 Score=33.46 Aligned_cols=37 Identities=35% Similarity=0.499 Sum_probs=29.7
Q ss_pred EEEEECCCCCCHHHHHHH-HHHHHHHCCCCCEEEEEECC
Q ss_conf 999527866673379999-99999733898689995088
Q gi|254780827|r 85 VVGITGSVAVGKSTFARI-LCILLQQISNFKVSLITTDG 122 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~-L~~lL~~~~~~~V~lis~Dg 122 (311)
+|+|+|--||||||+|-. +..++++-+ .+|-.|-.|-
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~-~~VLvVDaDp 39 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGG-YNVLVVDADP 39 (255)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC-CEEEEEECCC
T ss_conf 6999659976589999999999986489-5499994899
No 416
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.93 E-value=0.037 Score=34.43 Aligned_cols=46 Identities=30% Similarity=0.358 Sum_probs=31.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHH
Q ss_conf 99952786667337999999999733898689995088758826887
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLT 131 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~ 131 (311)
|.||-|-||+||||+-|.+. .|.+....+|.+-..|-.-++.+.|.
T Consensus 34 I~GIIG~SGAGKSTLiR~iN-~Le~PtsG~v~v~G~di~~l~~~~Lr 79 (339)
T COG1135 34 IFGIIGYSGAGKSTLLRLIN-LLERPTSGSVFVDGQDLTALSEAELR 79 (339)
T ss_pred EEEEECCCCCCHHHHHHHHH-CCCCCCCCEEEECCEECCCCCHHHHH
T ss_conf 89997488886788999985-65799886499868740217867899
No 417
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=94.90 E-value=0.06 Score=32.99 Aligned_cols=51 Identities=22% Similarity=0.253 Sum_probs=33.5
Q ss_pred HHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 987167766787679995278666733799999999973389868999508875
Q gi|254780827|r 71 NKFLNLKEESKIPFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFL 124 (311)
Q Consensus 71 ~~fl~~~~~~k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~ 124 (311)
...||. .-..=-|+-|+|.+|+||||+|-.+..-..+ .+.+|.-|++.+|.
T Consensus 13 D~~LgG--Gi~~G~itei~G~pG~GKTtl~lq~a~~~~~-~g~~vlYidtE~~~ 63 (224)
T PRK09361 13 DELLGG--GIERGTITQIYGPPGSGKTNICIQLAVEAAR-QGKKVIYIDTEGLS 63 (224)
T ss_pred HHHHCC--CCCCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEECCCCCC
T ss_conf 986269--9888879999899998599999999999997-49909996787678
No 418
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.90 E-value=0.084 Score=32.01 Aligned_cols=71 Identities=20% Similarity=0.229 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC-CCCCEEEEEE
Q ss_conf 998999999999999999989----9999871677667876799952786667337999999999733-8986899950
Q gi|254780827|r 47 KIYFPLSHLLLINVNSAKITC----HQYNKFLNLKEESKIPFVVGITGSVAVGKSTFARILCILLQQI-SNFKVSLITT 120 (311)
Q Consensus 47 ~iy~pl~~ll~~~~~~~~~~~----~~~~~fl~~~~~~k~PfIIGIAG~~asGKST~Ar~L~~lL~~~-~~~~V~lis~ 120 (311)
++..|+...+..+..-.+.-. .....|+- .-. -.|+|| .+|++|+|||-+|+.|...|..- .+.+|.+|.-
T Consensus 157 e~e~p~~~~~~~~~~~~~~k~f~~~~~i~~~~~-sLk-tKknvI-L~G~pGtGKT~lAk~lA~~l~g~~~~~rv~~Vqf 232 (459)
T PRK11331 157 SVIPPMSKTESYCLEDALNDLFIPETTIETILK-RLT-IKKNII-LQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQF 232 (459)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHC-CCCCEE-EECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 127877889999998763135456135999999-854-588279-6589998878999999999707887784689983
No 419
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=94.89 E-value=0.019 Score=36.45 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 99952786667337999999999
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILL 107 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL 107 (311)
.|||.|..||||||+.++|.-.+
T Consensus 29 ~vgLVG~NGsGKSTLlklL~G~~ 51 (638)
T PRK10636 29 KVGLVGKNGCGKSTLLALLKNEI 51 (638)
T ss_pred EEEEECCCCCHHHHHHHHHCCCC
T ss_conf 99998899988999999980899
No 420
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=94.88 E-value=0.048 Score=33.63 Aligned_cols=34 Identities=29% Similarity=0.328 Sum_probs=23.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 9995278666733799999999973389868999508
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTD 121 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~D 121 (311)
||=|.||+.||||.+|..| ...++.+.+-+-|.-
T Consensus 3 i~LVtGG~rSGKS~~AE~l---a~~~~~~~~YiAT~~ 36 (170)
T PRK05800 3 LILVTGGARSGKSRFAERL---AAQSGLQVLYIATAQ 36 (170)
T ss_pred EEEEECCCCCCHHHHHHHH---HHHCCCCEEEEECCC
T ss_conf 9999798763489999999---985699829997588
No 421
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=94.87 E-value=0.059 Score=33.02 Aligned_cols=41 Identities=37% Similarity=0.380 Sum_probs=29.9
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHH-HHHHHCCCCCEEEEEEC
Q ss_conf 67876799952786667337999999-99973389868999508
Q gi|254780827|r 79 ESKIPFVVGITGSVAVGKSTFARILC-ILLQQISNFKVSLITTD 121 (311)
Q Consensus 79 ~~k~PfIIGIAG~~asGKST~Ar~L~-~lL~~~~~~~V~lis~D 121 (311)
....+=++-|.|++.|||||+++.|. .++++- .+|.+|.-|
T Consensus 69 ~~~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG--~~v~iiDaD 110 (398)
T COG1341 69 SAGKVGVVMVVGPVDSGKSTLTTYLANKLLARG--RKVAIIDAD 110 (398)
T ss_pred HCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCC--CEEEEEECC
T ss_conf 206873899989867678899999998876447--418999689
No 422
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.85 E-value=0.029 Score=35.08 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
|+||.|+.|+||||+.+.+.-++.
T Consensus 30 i~~liGpNGaGKSTLl~~i~Gl~~ 53 (242)
T TIGR03411 30 LRVIIGPNGAGKTTMMDVITGKTR 53 (242)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999998999759999999967957
No 423
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.85 E-value=0.015 Score=36.98 Aligned_cols=23 Identities=39% Similarity=0.582 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 99952786667337999999999
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILL 107 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL 107 (311)
++||.|+.|+||||+.+.|.-++
T Consensus 27 ~~~i~G~nGaGKSTLl~~l~gl~ 49 (157)
T cd00267 27 IVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99998788999899999995884
No 424
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=94.84 E-value=0.014 Score=37.33 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
++||.|+.||||||+.+.|.-++.
T Consensus 30 i~~liGpNGaGKSTLlk~i~Gl~~ 53 (255)
T PRK11231 30 ITALIGPNGCGKSTLLKCFARLLT 53 (255)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999999819999999975988
No 425
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=94.83 E-value=0.046 Score=33.75 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=21.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 7999527866673379999999997
Q gi|254780827|r 84 FVVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 84 fIIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
=|+|+.|+-|+||||+.+.+.-++.
T Consensus 27 ei~gllG~NGaGKSTLl~~i~Gl~~ 51 (208)
T cd03268 27 EIYGFLGPNGAGKTTTMKIILGLIK 51 (208)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 1999999999999999999957837
No 426
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=94.83 E-value=0.021 Score=36.04 Aligned_cols=20 Identities=30% Similarity=0.567 Sum_probs=8.1
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99952786667337999999
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILC 104 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~ 104 (311)
|+|+.|.+||||||+.++|.
T Consensus 33 i~~liG~nGaGKSTL~~~l~ 52 (510)
T PRK09700 33 IHALLGENGAGKSTLMKVLS 52 (510)
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99998999972999999983
No 427
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.81 E-value=0.023 Score=35.83 Aligned_cols=17 Identities=41% Similarity=0.560 Sum_probs=15.9
Q ss_pred EEEEECCCCCCHHHHHH
Q ss_conf 99952786667337999
Q gi|254780827|r 85 VVGITGSVAVGKSTFAR 101 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar 101 (311)
+++|.|++||||||+.+
T Consensus 23 ~~~iiG~nGsGKSTLl~ 39 (176)
T cd03238 23 LVVVTGVSGSGKSTLVN 39 (176)
T ss_pred EEEEECCCCCCHHHHHH
T ss_conf 99999999998999999
No 428
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB; InterPro: IPR013374 This model describes a protein involved in type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly, and is closely related to GspE (IPR013369 from INTERPRO) of type II secretion systems (also referred to as the main terminal branch of the general secretion pathway). Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0009297 pilus biogenesis.
Probab=94.81 E-value=0.016 Score=36.84 Aligned_cols=29 Identities=31% Similarity=0.385 Sum_probs=23.2
Q ss_pred HHHHHHHCCCCCCCCCE-EEEEECCCCCCHHHH
Q ss_conf 99998716776678767-999527866673379
Q gi|254780827|r 68 HQYNKFLNLKEESKIPF-VVGITGSVAVGKSTF 99 (311)
Q Consensus 68 ~~~~~fl~~~~~~k~Pf-IIGIAG~~asGKST~ 99 (311)
.+++.||. .-++|| .|=|+||+|||||++
T Consensus 313 ~Qk~~fL~---Ai~kPqGMvLVTGPTGSGKTVS 342 (577)
T TIGR02538 313 DQKALFLE---AIHKPQGMVLVTGPTGSGKTVS 342 (577)
T ss_pred HHHHHHHH---HHHCCCCCEEEECCCCCCHHHH
T ss_conf 89999999---9707997288626659841687
No 429
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=94.80 E-value=0.25 Score=28.81 Aligned_cols=44 Identities=32% Similarity=0.459 Sum_probs=29.0
Q ss_pred HCCCCCCCCCE-EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 16776678767-9995278666733799999999973389868999508
Q gi|254780827|r 74 LNLKEESKIPF-VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTD 121 (311)
Q Consensus 74 l~~~~~~k~Pf-IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~D 121 (311)
.|.+ +.++|. ..--+||+|||||-+|+.|...| |++ .-.+|..|
T Consensus 587 aGl~-d~~rPigsFLFlGPTGVGKTElAK~LA~~L--Fg~-e~~liR~D 631 (852)
T TIGR03345 587 AGLE-DPRKPLGVFLLVGPSGVGKTETALALAELL--YGG-EQNLITIN 631 (852)
T ss_pred CCCC-CCCCCCEEEEEECCCCCCHHHHHHHHHHHH--CCC-CCCEEEEC
T ss_conf 1799-999985689987899877899999999997--198-61147842
No 430
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=94.79 E-value=0.025 Score=35.53 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
|+|+.|+.|+||||+-+.+.-++.
T Consensus 28 i~~llGpNGAGKSTll~~i~Gl~~ 51 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLVK 51 (232)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999999999619999999977999
No 431
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=94.79 E-value=0.072 Score=32.44 Aligned_cols=26 Identities=38% Similarity=0.521 Sum_probs=22.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 7999527866673379999999997338
Q gi|254780827|r 84 FVVGITGSVAVGKSTFARILCILLQQIS 111 (311)
Q Consensus 84 fIIGIAG~~asGKST~Ar~L~~lL~~~~ 111 (311)
-||||+|| +|||||..+|..+|+++.
T Consensus 592 ~vIgITGS--nGKTTTKeml~~iLs~~~ 617 (953)
T PRK11929 592 PVIAITGS--NGKTTTKEMIAAILAQWQ 617 (953)
T ss_pred CEEEEECC--CCHHHHHHHHHHHHHHCC
T ss_conf 78999678--850789999999998517
No 432
>PRK13409 putative ATPase RIL; Provisional
Probab=94.78 E-value=0.014 Score=37.25 Aligned_cols=25 Identities=40% Similarity=0.786 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 9995278666733799999999973
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQ 109 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~ 109 (311)
+|||.|+-|+||||++++|.-+++.
T Consensus 367 iigIvG~NGaGKTTLlKiLaG~lkP 391 (590)
T PRK13409 367 VIGIVGPNGIGKTTFVKLLAGVLKP 391 (590)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 8999888888789999998288778
No 433
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.78 E-value=0.024 Score=35.65 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
++||-|+.||||||+.++|.-++.
T Consensus 28 ~~~l~G~NGsGKTTl~~~l~G~~~ 51 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999998999849999999848988
No 434
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.77 E-value=0.055 Score=33.27 Aligned_cols=37 Identities=32% Similarity=0.319 Sum_probs=28.2
Q ss_pred EEEEEECCCCCCHHHHHH-HHHHHHHHCCCCCEEEEEECC
Q ss_conf 799952786667337999-999999733898689995088
Q gi|254780827|r 84 FVVGITGSVAVGKSTFAR-ILCILLQQISNFKVSLITTDG 122 (311)
Q Consensus 84 fIIGIAG~~asGKST~Ar-~L~~lL~~~~~~~V~lis~Dg 122 (311)
-++-|.|++|||||++|- .+...+.+ ..+|..||+|-
T Consensus 24 ~~~lI~G~pGsGKT~f~~qfl~~~~~~--ge~vlyvs~~e 61 (260)
T COG0467 24 SVVLITGPPGTGKTIFALQFLYEGARE--GEPVLYVSTEE 61 (260)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHC--CCEEEEEEEEC
T ss_conf 789999389986899999999977626--98589999206
No 435
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=94.76 E-value=0.031 Score=34.92 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=21.0
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 8767999527866673379999999997
Q gi|254780827|r 81 KIPFVVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 81 k~PfIIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
..|-+| ..|++|+||||+|+++..-++
T Consensus 49 ~l~h~l-f~GPPG~GKTTlAriiAk~~~ 75 (234)
T pfam05496 49 ALDHVL-LYGPPGLGKTTLANIIANEMG 75 (234)
T ss_pred CCCEEE-EECCCCCCHHHHHHHHHHHHC
T ss_conf 766278-878999988899999998408
No 436
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.75 E-value=0.017 Score=36.62 Aligned_cols=123 Identities=17% Similarity=0.142 Sum_probs=57.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCC--CEEEEEECCCCCCHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99952786667337999999999733898--6899950887588268876000201898133128999999997412664
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNF--KVSLITTDGFLFPNAVLTANNLMQRKGFPESYDSNKLLTFLSDVKSGKK 162 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~--~V~lis~DgF~~~n~~l~~~~l~~rkGfPeS~D~~~L~~~L~~lK~G~~ 162 (311)
||-|+|+|||||+|+++.|. ++.+.. .+...||= +-..-|..| ..|-+-.-.+|-..+++|+-
T Consensus 1 livi~GPSG~GK~tl~~~L~---~~~~~~~~~~vs~TTR----~~r~~E~~G--------~dY~Fvs~~~F~~~i~~g~f 65 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLL---EEFDPNFGFSVSHTTR----KPRPGEVDG--------VDYHFVSKEEFERLIENGEF 65 (137)
T ss_pred CEEEECCCCCCHHHHHHHHH---HCCCCCEEEEEEEECC----CCCCCCCCC--------CEEEEECHHHHHHHHHCCEE
T ss_conf 99999999889999999998---5198776875660378----998887789--------67898679999999866914
Q ss_pred EEEEEC-CCCCCCCCCCCC-EEEECCCCEEEEEC----CHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHHHHHHHHH
Q ss_conf 058740-443225658983-69986896599706----100357654575777401000231157730889998879988
Q gi|254780827|r 163 KVAVPR-YSHSQYDILEGE-YDTIIQPDILLIEG----INVLQQNSLSDNQKATPMISDFLDFSIYIDADKRDIHRWYLN 236 (311)
Q Consensus 163 ~V~~Pv-Ysh~~~D~vp~~-~~vi~~pdIIIvEG----i~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~i~~wyi~ 236 (311)
+.+=. +.+ .|-....+ ...+....++|++. ..-+.. +.+--..|||..|.-++..-.++
T Consensus 66 -~E~~~~~g~-~YGt~~~~I~~~~~~G~~vil~id~~g~~~lk~-------------~~~~~~~IFI~PP~~~i~~~~~~ 130 (137)
T cd00071 66 -LEWAEFHGN-YYGTSKAAVEEALAEGKIVILEIDVQGARQVKK-------------SYPDAVSIFILPPDYVIVNDDLE 130 (137)
T ss_pred -EEEEEECCC-CCCCCHHHHHHHHHCCCEEEEEEEHHHHHHHHH-------------CCCCEEEEEEECCCHHHHHHHHH
T ss_conf -999999880-662789999999963994999974899999997-------------09981999997909689999999
Q ss_pred H
Q ss_conf 7
Q gi|254780827|r 237 R 237 (311)
Q Consensus 237 R 237 (311)
|
T Consensus 131 ~ 131 (137)
T cd00071 131 K 131 (137)
T ss_pred H
T ss_conf 9
No 437
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.74 E-value=0.089 Score=31.84 Aligned_cols=105 Identities=20% Similarity=0.253 Sum_probs=60.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC-CC--------------CCEEEEEEC---CCCCCHHHHH--HHCHHHCCC---
Q ss_conf 799952786667337999999999733-89--------------868999508---8758826887--600020189---
Q gi|254780827|r 84 FVVGITGSVAVGKSTFARILCILLQQI-SN--------------FKVSLITTD---GFLFPNAVLT--ANNLMQRKG--- 140 (311)
Q Consensus 84 fIIGIAG~~asGKST~Ar~L~~lL~~~-~~--------------~~V~lis~D---gF~~~n~~l~--~~~l~~rkG--- 140 (311)
=++||.|+=|+||||+-+.+--+++.. +. .+|.-|++- ++-+|-.+.+ ..|...++|
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHCCCCCCCCCCC
T ss_conf 68999999888889999999678767742699836663334667769975761026767996799998606754466013
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEE-------EECCCCEEEEEC
Q ss_conf 813312899999999741266405874044322565898369-------986896599706
Q gi|254780827|r 141 FPESYDSNKLLTFLSDVKSGKKKVAVPRYSHSQYDILEGEYD-------TIIQPDILLIEG 194 (311)
Q Consensus 141 fPeS~D~~~L~~~L~~lK~G~~~V~~PvYsh~~~D~vp~~~~-------vi~~pdIIIvEG 194 (311)
.|.+-|.+...+.|.++--.. -...|+. .-.-|+.+ ....||++++.=
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~-~~~r~i~-----~LSGGQ~QRV~lARAL~~~p~lllLDE 165 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMED-LRDRQIG-----ELSGGQKQRVLLARALAQNPDLLLLDE 165 (254)
T ss_pred CCCHHHHHHHHHHHHHCCCHH-HHCCCCC-----CCCCHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 666777999999999839266-6479555-----467279999999998536999899668
No 438
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=94.73 E-value=0.048 Score=33.66 Aligned_cols=42 Identities=24% Similarity=0.252 Sum_probs=28.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHC-CC-CCEEEEEECCCCCCHHHH
Q ss_conf 9952786667337999999999733-89-868999508875882688
Q gi|254780827|r 86 VGITGSVAVGKSTFARILCILLQQI-SN-FKVSLITTDGFLFPNAVL 130 (311)
Q Consensus 86 IGIAG~~asGKST~Ar~L~~lL~~~-~~-~~V~lis~DgF~~~n~~l 130 (311)
|.|-|.+||||||+.+++ ...| ++ ..+.+=.++=..++.+.+
T Consensus 367 vAIlG~SGsGKSTllqLl---~~~~~~~~G~i~~~g~~~~~l~~~~~ 410 (573)
T COG4987 367 VAILGRSGSGKSTLLQLL---AGAWDPQQGSITLNGVEIASLDEQAL 410 (573)
T ss_pred EEEECCCCCCHHHHHHHH---HHCCCCCCCEEEECCCCHHHCCHHHH
T ss_conf 888779998789999999---72358788736578867331883668
No 439
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.72 E-value=0.026 Score=35.48 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 99952786667337999999999
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILL 107 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL 107 (311)
++||-|++||||||+.+.|.-++
T Consensus 35 i~~llG~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 35 MVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999899998899999983787
No 440
>pfam02456 Adeno_IVa2 Adenovirus IVa2 protein. IVa2 protein can interact with the adenoviral packaging signal and that this interaction involves DNA sequences that have previously been demonstrated to be required for packaging. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter.
Probab=94.71 E-value=0.17 Score=29.84 Aligned_cols=67 Identities=22% Similarity=0.248 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCC------CCCCCEEEEEECCCCCCHHHHHHHH-H-HHHHHCCCCCEEEE-EECCC
Q ss_conf 999999999998999998716776------6787679995278666733799999-9-99973389868999-50887
Q gi|254780827|r 55 LLLINVNSAKITCHQYNKFLNLKE------ESKIPFVVGITGSVAVGKSTFARIL-C-ILLQQISNFKVSLI-TTDGF 123 (311)
Q Consensus 55 ll~~~~~~~~~~~~~~~~fl~~~~------~~k~PfIIGIAG~~asGKST~Ar~L-~-~lL~~~~~~~V~li-s~DgF 123 (311)
|...++ +.+......+.||.... -...|||--|-|++|+|||-+-|-| . .+++-.| ..|..| ++-|-
T Consensus 54 l~~~~~-~~~~~~n~~~~~L~~dG~~~SLNy~~qP~I~vVYGPTG~GKSQLlRNlis~~lI~P~P-ETVfFItPq~~m 129 (370)
T pfam02456 54 LLEAME-AVHGQLNEASRYLRPDGELPSLNYGLQPVIGVVYGPTGCGKSQLLRNLLSCQLIQPIP-ETVFFITPQKDM 129 (370)
T ss_pred HHHHHH-HHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCC-CEEEEECCCCCC
T ss_conf 999999-9999998631540668965755467874499998899877899999987346677999-728997677786
No 441
>COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=94.71 E-value=0.069 Score=32.57 Aligned_cols=26 Identities=38% Similarity=0.502 Sum_probs=22.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 7679995278666733799999999973
Q gi|254780827|r 82 IPFVVGITGSVAVGKSTFARILCILLQQ 109 (311)
Q Consensus 82 ~PfIIGIAG~~asGKST~Ar~L~~lL~~ 109 (311)
.|-||||+|| +|||||...|..+|+.
T Consensus 102 ~~kvIaITGS--~GKTTTKe~la~iL~~ 127 (451)
T COG0770 102 NAKVIAITGS--NGKTTTKEMLAAILST 127 (451)
T ss_pred CCCEEEEECC--CCCHHHHHHHHHHHHH
T ss_conf 9968999589--9707699999999863
No 442
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=94.67 E-value=0.015 Score=36.98 Aligned_cols=11 Identities=36% Similarity=0.528 Sum_probs=5.2
Q ss_pred ECCCCEEEEEC
Q ss_conf 86896599706
Q gi|254780827|r 184 IIQPDILLIEG 194 (311)
Q Consensus 184 i~~pdIIIvEG 194 (311)
+.+.+|+=+-|
T Consensus 271 v~~GEivgl~G 281 (491)
T PRK10982 271 LHKGEILGIAG 281 (491)
T ss_pred EECCCEEEEEC
T ss_conf 96896899778
No 443
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.65 E-value=0.027 Score=35.39 Aligned_cols=20 Identities=25% Similarity=0.547 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99952786667337999999
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILC 104 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~ 104 (311)
++||.|++||||||+.++|.
T Consensus 35 ~~~llGpnGaGKSTLl~~l~ 54 (192)
T cd03232 35 LTALMGESGAGKTTLLDVLA 54 (192)
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999998899999983
No 444
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.62 E-value=0.027 Score=35.33 Aligned_cols=17 Identities=29% Similarity=0.481 Sum_probs=15.7
Q ss_pred EEEEECCCCCCHHHHHH
Q ss_conf 99952786667337999
Q gi|254780827|r 85 VVGITGSVAVGKSTFAR 101 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar 101 (311)
+++|.|++||||||+.+
T Consensus 23 ~~aIiG~sGsGKSTLl~ 39 (261)
T cd03271 23 LTCVTGVSGSGKSSLIN 39 (261)
T ss_pred EEEEECCCCCCHHHHHH
T ss_conf 99998799986999999
No 445
>KOG2228 consensus
Probab=94.61 E-value=0.34 Score=27.89 Aligned_cols=76 Identities=22% Similarity=0.246 Sum_probs=48.7
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHH-HHHHHHHH
Q ss_conf 99874488846899999998999999999999999989999987167766787679995278666733799-99999997
Q gi|254780827|r 30 SNQLLSFDSPIDSTEIYKIYFPLSHLLLINVNSAKITCHQYNKFLNLKEESKIPFVVGITGSVAVGKSTFA-RILCILLQ 108 (311)
Q Consensus 30 ~~~l~~~~d~i~~~ev~~iy~pl~~ll~~~~~~~~~~~~~~~~fl~~~~~~k~PfIIGIAG~~asGKST~A-r~L~~lL~ 108 (311)
.++|-| +.|.+--+.+-|--|++|+. ...+++..+ . +| |-|+-|||||+.- ..|.. .+
T Consensus 16 ~~rl~~--~~~~l~g~~~~~~~l~~~lk-------------qt~~~gEsn--s--vi-iigprgsgkT~li~~~Ls~-~q 74 (408)
T KOG2228 16 RERLCG--PHINLFGVQDEQKHLSELLK-------------QTILHGESN--S--VI-IIGPRGSGKTILIDTRLSD-IQ 74 (408)
T ss_pred HHHHCC--CCCCEEEHHHHHHHHHHHHH-------------HHHHHCCCC--C--EE-EECCCCCCCEEEEHHHHHH-HH
T ss_conf 999627--87650005878999999999-------------999844777--2--69-9814778816740778766-77
Q ss_pred HCCCCCEEEEEECCCCCCH
Q ss_conf 3389868999508875882
Q gi|254780827|r 109 QISNFKVSLITTDGFLFPN 127 (311)
Q Consensus 109 ~~~~~~V~lis~DgF~~~n 127 (311)
. .+.++-+|-.||++...
T Consensus 75 ~-~~E~~l~v~Lng~~~~d 92 (408)
T KOG2228 75 E-NGENFLLVRLNGELQTD 92 (408)
T ss_pred H-CCCEEEEEEECCCCHHH
T ss_conf 5-17727999878500155
No 446
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.60 E-value=0.038 Score=34.35 Aligned_cols=106 Identities=21% Similarity=0.296 Sum_probs=54.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-------------CCCCEEEEEECCCCCC-HHHHHHHCH-HHCCCCHHHHHHHH
Q ss_conf 99952786667337999999999733-------------8986899950887588-268876000-20189813312899
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQI-------------SNFKVSLITTDGFLFP-NAVLTANNL-MQRKGFPESYDSNK 149 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~-------------~~~~V~lis~DgF~~~-n~~l~~~~l-~~rkGfPeS~D~~~ 149 (311)
++.|-|+|||||||+-|++.-|.+.. |.+.+..|-++.-++| ..+++.-.+ ....|.+..=-.+.
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~ 110 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARER 110 (248)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCEEEEECCCCCCCHHHHHHHHEEHHHCCCCCHHHHHHH
T ss_conf 99998999788999999996878777755998882157899877999266764514668844350441256561768999
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCC----CCCCCEEEECCCCEEEEE
Q ss_conf 99999974126640587404432256----589836998689659970
Q gi|254780827|r 150 LLTFLSDVKSGKKKVAVPRYSHSQYD----ILEGEYDTIIQPDILLIE 193 (311)
Q Consensus 150 L~~~L~~lK~G~~~V~~PvYsh~~~D----~vp~~~~vi~~pdIIIvE 193 (311)
-.+.|..+.-+. ..-.|-|...- |+.=.......|+|++..
T Consensus 111 a~~~L~~VgL~~---~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlD 155 (248)
T COG1116 111 AKELLELVGLAG---FEDKYPHQLSGGMRQRVAIARALATRPKLLLLD 155 (248)
T ss_pred HHHHHHHCCCCC---HHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 999999759742---101696001847999999999971499979876
No 447
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.57 E-value=0.02 Score=36.17 Aligned_cols=16 Identities=50% Similarity=0.634 Sum_probs=15.2
Q ss_pred EEEEECCCCCCHHHHH
Q ss_conf 9995278666733799
Q gi|254780827|r 85 VVGITGSVAVGKSTFA 100 (311)
Q Consensus 85 IIGIAG~~asGKST~A 100 (311)
+++|.|++||||||++
T Consensus 23 ~~aIvG~nGsGKSTL~ 38 (226)
T cd03270 23 LVVITGVSGSGKSSLA 38 (226)
T ss_pred EEEEECCCCCHHHHHH
T ss_conf 9999878996098983
No 448
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=94.57 E-value=0.06 Score=33.00 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=21.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 7999527866673379999999997
Q gi|254780827|r 84 FVVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 84 fIIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
=|+|+.|+.|+||||+-++|.-++.
T Consensus 34 ei~gllGpNGAGKSTli~~l~Gl~~ 58 (306)
T PRK13536 34 ECFGLLGPNGAGKSTIARMILGMTS 58 (306)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 6999999989809999999967957
No 449
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.56 E-value=0.072 Score=32.44 Aligned_cols=110 Identities=15% Similarity=0.151 Sum_probs=54.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCHHHCCCCH-------HHHHHHHHHHHHHHH
Q ss_conf 9995278666733799999999973389868999508875882688760002018981-------331289999999974
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTANNLMQRKGFP-------ESYDSNKLLTFLSDV 157 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~~~l~~rkGfP-------eS~D~~~L~~~L~~l 157 (311)
++-|||.+|+||||++..+..-+....+.+|..+|.- .+..++-.|-+..--|.| .....+.+..-+..+
T Consensus 32 L~viaarpg~GKT~f~~~~a~~~~~~~g~~vl~~SlE---m~~~~~~~Rlls~~~g~~~~~~~~~~~~~~e~~~~~~~~~ 108 (271)
T cd01122 32 LIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLE---EPVVRTARRLLGQYAGKRLHLPDTVFIYTLEEFDAAFDEF 108 (271)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECC---CCHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 8999968998699999999999999769908999704---9999999999999829971103446778099999999997
Q ss_pred HCCCCEEEEECCCCCCCC---CCCC---CEEEECCCCEEEEECCHHCCC
Q ss_conf 126640587404432256---5898---369986896599706100357
Q gi|254780827|r 158 KSGKKKVAVPRYSHSQYD---ILEG---EYDTIIQPDILLIEGINVLQQ 200 (311)
Q Consensus 158 K~G~~~V~~PvYsh~~~D---~vp~---~~~vi~~pdIIIvEGi~vL~~ 200 (311)
... +. ..+|++.... .+.. .......+|+|+|.-+..+..
T Consensus 109 ~~~-~~--l~i~d~~~~~~~~~i~~~ir~~~~~~~~~~vvIDylqll~~ 154 (271)
T cd01122 109 EGT-GR--LFMYDSFGEYSMDSVLEKVRYMAVSHGIQHIIIDNLSIMVS 154 (271)
T ss_pred CCC-CC--EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHCCC
T ss_conf 079-98--08878999988999999999999828998899831785036
No 450
>KOG2749 consensus
Probab=94.54 E-value=0.19 Score=29.67 Aligned_cols=137 Identities=21% Similarity=0.184 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCC--CEEE-EEECCCCCC
Q ss_conf 9999999999999999899999871677667876799952786667337999999999733898--6899-950887588
Q gi|254780827|r 50 FPLSHLLLINVNSAKITCHQYNKFLNLKEESKIPFVVGITGSVAVGKSTFARILCILLQQISNF--KVSL-ITTDGFLFP 126 (311)
Q Consensus 50 ~pl~~ll~~~~~~~~~~~~~~~~fl~~~~~~k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~--~V~l-is~DgF~~~ 126 (311)
-|+.-++|+|.+-.+......+ ...+-|- +-|.|+.-+||||+||+|.----+.+.+ =|++ +++-++-.|
T Consensus 77 TpM~~ylNlH~ale~~R~~~e~------~~~~GPr-v~vVGp~d~GKsTl~r~L~nyavk~gr~Plfv~LDvgQ~sitiP 149 (415)
T KOG2749 77 TPMVLYLNLHAALEKRRMQAEE------ESSYGPR-VMVVGPTDVGKSTLCRILLNYAVKQGRRPLFVELDVGQGSITIP 149 (415)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH------HHCCCCE-EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEECC
T ss_conf 8730001399999998665542------0025977-99989876566789999999998717865389747999724425
Q ss_pred HHHH-----------H----HHCHHHCCCC-HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEECCCCEE
Q ss_conf 2688-----------7----6000201898-1331289999999974126640587404432256589836998689659
Q gi|254780827|r 127 NAVL-----------T----ANNLMQRKGF-PESYDSNKLLTFLSDVKSGKKKVAVPRYSHSQYDILEGEYDTIIQPDIL 190 (311)
Q Consensus 127 n~~l-----------~----~~~l~~rkGf-PeS~D~~~L~~~L~~lK~G~~~V~~PvYsh~~~D~vp~~~~vi~~pdII 190 (311)
-+.- + ...+...+|+ -.+-+.+++...++++-.- +. -..+-....++. .-+++.+-++
T Consensus 150 GsiaA~~i~~~~D~~eGf~l~~pLV~~FG~~sp~~N~~LY~~~~s~La~v---~~-~~~~~n~~ar~s--G~iInT~g~i 223 (415)
T KOG2749 150 GSIAAIPIEMPLDVIEGFSLTAPLVYNFGLTSPSTNLELYKALVSELAEV---LK-QRLSLNPEARVS--GCIINTCGWI 223 (415)
T ss_pred CCHHHEECCCCCCHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHH---HH-HHHCCCCHHCCC--CEEEECCCEE
T ss_conf 42220210232434317656885266326899876889999999999999---99-874258111005--5487126314
Q ss_pred EEECCHHCC
Q ss_conf 970610035
Q gi|254780827|r 191 LIEGINVLQ 199 (311)
Q Consensus 191 IvEGi~vL~ 199 (311)
-=||.-.|.
T Consensus 224 ~~egy~~ll 232 (415)
T KOG2749 224 EGEGYAALL 232 (415)
T ss_pred CCCCHHHHH
T ss_conf 155589999
No 451
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein; InterPro: IPR005666 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). These proteins are involved in the transmembrane transport of sulphate and thiosulphate.; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016020 membrane.
Probab=94.53 E-value=0.036 Score=34.48 Aligned_cols=38 Identities=29% Similarity=0.378 Sum_probs=26.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 799952786667337999999999733898689995088
Q gi|254780827|r 84 FVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDG 122 (311)
Q Consensus 84 fIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~Dg 122 (311)
-+++.-|||||||||+-|++.-| .+-...++.+-..|-
T Consensus 27 ~lvaLLGPSGSGKsTLLR~iAGL-e~pd~G~I~~~G~D~ 64 (241)
T TIGR00968 27 SLVALLGPSGSGKSTLLRVIAGL-EQPDSGRIILNGRDA 64 (241)
T ss_pred EEEEEECCCCCCHHHHHHHHHCC-CCCCCCEEEEEECCC
T ss_conf 27985468987378999998357-999842699852002
No 452
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.53 E-value=0.057 Score=33.16 Aligned_cols=109 Identities=19% Similarity=0.240 Sum_probs=52.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CC----------------CCEEEEEECCCCCCHHH-HHHHC-HHHCCCCHHHH
Q ss_conf 99952786667337999999999733-89----------------86899950887588268-87600-02018981331
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQI-SN----------------FKVSLITTDGFLFPNAV-LTANN-LMQRKGFPESY 145 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~-~~----------------~~V~lis~DgF~~~n~~-l~~~~-l~~rkGfPeS~ 145 (311)
|+|+-|+.|+||||+-++|.-++..- ++ .++..++++.-+|++-. .+.-. ...-+|.|.+-
T Consensus 27 i~gllGpNGAGKSTll~~i~Gl~~p~sG~i~i~g~~~~~~~~~~~~~iG~vpq~~~l~~~ltv~e~l~~~~~l~g~~~~~ 106 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKE 106 (211)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCHHHHHHHEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHH
T ss_conf 59999999823999999997596689629999999966188989730799757776898987999999999985999899
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECC--CCCCCCCCCCCEEEECCCCEEEEEC
Q ss_conf 289999999974126640587404--4322565898369986896599706
Q gi|254780827|r 146 DSNKLLTFLSDVKSGKKKVAVPRY--SHSQYDILEGEYDTIIQPDILLIEG 194 (311)
Q Consensus 146 D~~~L~~~L~~lK~G~~~V~~PvY--sh~~~D~vp~~~~vi~~pdIIIvEG 194 (311)
..+...+.|..+--. .....|+. |.-.-.++.=..-.+..|+++|+.=
T Consensus 107 ~~~~~~~~l~~~~L~-~~~~~~~~~LSgG~kqrv~ia~al~~~P~lliLDE 156 (211)
T cd03264 107 VKARVDEVLELVNLG-DRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDE 156 (211)
T ss_pred HHHHHHHHHHHCCCH-HHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 999999999986995-58559544589889999999999828999999948
No 453
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=94.53 E-value=0.076 Score=32.28 Aligned_cols=39 Identities=31% Similarity=0.332 Sum_probs=33.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 7999527866673379999999997338986899950887
Q gi|254780827|r 84 FVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGF 123 (311)
Q Consensus 84 fIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF 123 (311)
.+|.|-|--|.||||++.-|..-|+..+ .+|.+|-.|-=
T Consensus 3 ~~iaiyGKGGIGKSTttaNlsaALA~~G-kkV~~IgcDPk 41 (269)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAALAKLG-KKVLQIGCDPK 41 (269)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCC-CEEEEECCCCC
T ss_conf 3999978995478889999999999769-93899818997
No 454
>PRK13542 consensus
Probab=94.53 E-value=0.019 Score=36.43 Aligned_cols=24 Identities=25% Similarity=0.515 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
++||.|+.|+||||+-+.|.-++.
T Consensus 46 i~~liGpNGaGKTTLlk~l~Gll~ 69 (224)
T PRK13542 46 LLQVMGPNGSGKTSLLRVLSGLMP 69 (224)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999999999999999999957978
No 455
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.52 E-value=0.021 Score=36.14 Aligned_cols=25 Identities=32% Similarity=0.529 Sum_probs=21.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 7999527866673379999999997
Q gi|254780827|r 84 FVVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 84 fIIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
=|+|+.|+.||||||+.+.|.-++.
T Consensus 27 ei~gl~G~NGaGKSTLl~~i~Gl~~ 51 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLLK 51 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 3999987899799999999976857
No 456
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=94.51 E-value=0.15 Score=30.29 Aligned_cols=47 Identities=26% Similarity=0.365 Sum_probs=34.2
Q ss_pred HHHCCCCCCCCCEEEEEE---CCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 871677667876799952---78666733799999999973389868999508
Q gi|254780827|r 72 KFLNLKEESKIPFVVGIT---GSVAVGKSTFARILCILLQQISNFKVSLITTD 121 (311)
Q Consensus 72 ~fl~~~~~~k~PfIIGIA---G~~asGKST~Ar~L~~lL~~~~~~~V~lis~D 121 (311)
.|+..+.....+-||.|+ || |||||+|-.|..-|+.. +.+|-+|=.|
T Consensus 110 ~~~p~R~~~~~~kVIaVaN~KGG--VGKTTtav~LA~~LA~~-G~RVLlIDLD 159 (405)
T PRK13869 110 DFVPHRRGSEHLQVIAVTNFKGG--SGKTTTSAHLAQYLALQ-GYRVLAVDLD 159 (405)
T ss_pred CCCCCCCCCCCCEEEEEECCCCC--CHHHHHHHHHHHHHHHC-CCCEEEEECC
T ss_conf 45899999999828999788877--65999999999999977-9988999645
No 457
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.51 E-value=0.032 Score=34.85 Aligned_cols=23 Identities=39% Similarity=0.502 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 99952786667337999999999
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILL 107 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL 107 (311)
|+||.|+.|+||||+.+.|.-++
T Consensus 28 i~~liGpNGaGKSTL~~~i~Gl~ 50 (230)
T TIGR03410 28 VTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99999999940999999997799
No 458
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=94.51 E-value=0.075 Score=32.34 Aligned_cols=36 Identities=36% Similarity=0.433 Sum_probs=30.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 9952786667337999999999733898689995088
Q gi|254780827|r 86 VGITGSVAVGKSTFARILCILLQQISNFKVSLITTDG 122 (311)
Q Consensus 86 IGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~Dg 122 (311)
|.|+|-=|+||||+|-.|...|++- ..+|-+|-+|-
T Consensus 2 ia~~GKGGvGKtt~~~~la~~l~~~-g~~vl~iD~Dp 37 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEK-GKPVLAIDADP 37 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC-CCEEEEEECCC
T ss_conf 7898899774999999999999978-99699998989
No 459
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=94.50 E-value=0.034 Score=34.63 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
++||.|+.||||||+-+.|.-++.
T Consensus 30 i~gLIGPNGAGKSTLLk~I~Gll~ 53 (409)
T PRK09536 30 LVGVVGPNGAGKTTLLRAMNGLIT 53 (409)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999987279999999966888
No 460
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=94.49 E-value=0.058 Score=33.08 Aligned_cols=42 Identities=21% Similarity=0.237 Sum_probs=28.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 7679995278666733799999999973389868999508875
Q gi|254780827|r 82 IPFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFL 124 (311)
Q Consensus 82 ~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~ 124 (311)
.|--|=+.|++|+||||+|+.+...+.+. ...+..++..++.
T Consensus 18 ~~~~ill~GppGtGKT~la~~ia~~~~~~-~~~~~~~~~~~~~ 59 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRP-GAPFLYLNASDLL 59 (151)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCC-CCCEEEEEHHHCC
T ss_conf 99808998999988659999999971213-7982785477704
No 461
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.49 E-value=0.27 Score=28.53 Aligned_cols=48 Identities=25% Similarity=0.328 Sum_probs=33.4
Q ss_pred HHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHH-HHHHHHCCCCCEEEEEEC
Q ss_conf 9987167766787679995278666733799999-999973389868999508
Q gi|254780827|r 70 YNKFLNLKEESKIPFVVGITGSVAVGKSTFARIL-CILLQQISNFKVSLITTD 121 (311)
Q Consensus 70 ~~~fl~~~~~~k~PfIIGIAG~~asGKST~Ar~L-~~lL~~~~~~~V~lis~D 121 (311)
...-||. .-..+-++-|.|.+|+|||++|..+ -..|+ .+.+|..+|+.
T Consensus 13 ld~~lgg--Gip~gs~~li~G~~GtGKsi~~~~~~~~~l~--~g~~~~yis~e 61 (230)
T PRK08533 13 LHKRLGG--GIPFGSIILIEGDESTGKSILSQRLAYGFLQ--NGYSVSYVSSQ 61 (230)
T ss_pred HHHHHCC--CCCCCCEEEEECCCCCCHHHHHHHHHHHHHH--CCCEEEEEEEC
T ss_conf 7887178--9889848999868998789999999999987--89869999943
No 462
>KOG0054 consensus
Probab=94.44 E-value=0.093 Score=31.71 Aligned_cols=63 Identities=22% Similarity=0.462 Sum_probs=34.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCC--C------EEEEEECCCCCCHHHHHHHCHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 99952786667337999999999733898--6------899950887588268876000201898133128999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNF--K------VSLITTDGFLFPNAVLTANNLMQRKGFPESYDSNKLLTFLSD 156 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~--~------V~lis~DgF~~~n~~l~~~~l~~rkGfPeS~D~~~L~~~L~~ 156 (311)
.++|.|+||||||++ |+++|...+.. . ++-+++-.+....... .++ =|=.-||-+.+.+.+++
T Consensus 549 lvaVvG~vGsGKSSL---L~AiLGEm~~~sG~v~v~gs~aYv~Q~pWI~ngTvr--eNI----LFG~~~d~~rY~~Vi~a 619 (1381)
T KOG0054 549 LVAVVGPVGSGKSSL---LSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTVR--ENI----LFGSPYDEERYDKVIKA 619 (1381)
T ss_pred EEEEECCCCCCHHHH---HHHHHCCCCCCCCEEEECCEEEEECCCCHHHCCCHH--HHH----CCCCCCCHHHHHHHHHH
T ss_conf 899989998888999---999965875567559984748986665564178566--750----06870359999999997
No 463
>PRK13537 lipooligosaccharide transporter ATP-binding subunit; Provisional
Probab=94.40 E-value=0.074 Score=32.37 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=21.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 7999527866673379999999997
Q gi|254780827|r 84 FVVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 84 fIIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
=|.|+-|+-|+||||+-++|.-++.
T Consensus 32 ei~gllGpNGAGKTTli~~l~Gl~~ 56 (304)
T PRK13537 32 ECFGLLGPNGAGKTTTLKMLLGLTH 56 (304)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 5999999989729999999977956
No 464
>KOG1534 consensus
Probab=94.38 E-value=0.074 Score=32.37 Aligned_cols=42 Identities=21% Similarity=0.415 Sum_probs=27.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEC----CCCCC
Q ss_conf 79995278666733799999999973389868999508----87588
Q gi|254780827|r 84 FVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTD----GFLFP 126 (311)
Q Consensus 84 fIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~D----gF~~~ 126 (311)
|-+-|.|+.||||||+|+.+..-.... +..+.+|..| .|-||
T Consensus 4 ya~lV~GpAgSGKSTyC~~~~~h~e~~-gRs~~vVNLDPAae~f~y~ 49 (273)
T KOG1534 4 YAQLVMGPAGSGKSTYCSSMYEHCETV-GRSVHVVNLDPAAEHFNYP 49 (273)
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHH-CCEEEEEECCHHHHHHCCC
T ss_conf 158987467888430789999999862-8545886268788860896
No 465
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=94.38 E-value=0.024 Score=35.73 Aligned_cols=24 Identities=33% Similarity=0.517 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
-+||.|-|||||||+.+.|-.|+.
T Consensus 315 TlGlVGESGSGKsTlG~allrL~~ 338 (534)
T COG4172 315 TLGLVGESGSGKSTLGLALLRLIP 338 (534)
T ss_pred EEEEEECCCCCCCHHHHHHHHHCC
T ss_conf 677770588981159999985247
No 466
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.36 E-value=0.04 Score=34.20 Aligned_cols=35 Identities=29% Similarity=0.428 Sum_probs=23.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC-CCEEEEEEC
Q ss_conf 9995278666733799999999973389-868999508
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISN-FKVSLITTD 121 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~-~~V~lis~D 121 (311)
|.||-|+||+||||+-|.+--++. |+ ..|.+-..|
T Consensus 36 i~~iiGgSGsGKStlLr~I~Gll~--P~~GeI~i~G~~ 71 (263)
T COG1127 36 ILAILGGSGSGKSTLLRLILGLLR--PDKGEILIDGED 71 (263)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCCC
T ss_conf 899988988689999999856578--988759984764
No 467
>CHL00095 clpC Clp protease ATP binding subunit
Probab=94.35 E-value=0.3 Score=28.23 Aligned_cols=94 Identities=15% Similarity=0.184 Sum_probs=47.1
Q ss_pred CCCHHHHHHHHCCCCCCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHCCCCCCCCCE-EEEEECCCC
Q ss_conf 889899998744888468999----9999899999999999999998999-----998716776678767-999527866
Q gi|254780827|r 24 ILSKKISNQLLSFDSPIDSTE----IYKIYFPLSHLLLINVNSAKITCHQ-----YNKFLNLKEESKIPF-VVGITGSVA 93 (311)
Q Consensus 24 ~l~~~~~~~l~~~~d~i~~~e----v~~iy~pl~~ll~~~~~~~~~~~~~-----~~~fl~~~~~~k~Pf-IIGIAG~~a 93 (311)
.++++++..+-+.--.|-... -.+-++-|-.-|+-.|-....-..+ .....|.+ +.++|. ..--+||+|
T Consensus 471 ~v~~~dI~~vvs~~tgiPv~~~~~~e~~~l~~le~~L~~~ViGQd~AI~~vs~ai~rsraGl~-~~~rPigsFlf~GPTG 549 (823)
T CHL00095 471 VVTEKDIAEIVSAWTGIPVNKLTKSESEKLIHMEETLHKRIIGQDEAVVAVSKAIRRARVGLK-NPNRPIASFIFCGPTG 549 (823)
T ss_pred CCCHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC-CCCCCCEEEEEECCCC
T ss_conf 207999999999986898476334588999878887877840769999999999999970899-8999746899878998
Q ss_pred CCHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 6733799999999973389868999508
Q gi|254780827|r 94 VGKSTFARILCILLQQISNFKVSLITTD 121 (311)
Q Consensus 94 sGKST~Ar~L~~lL~~~~~~~V~lis~D 121 (311)
||||-+|+.|...| |+ ..-.+|..|
T Consensus 550 vGKTElAK~LA~~L--Fg-~e~~liR~D 574 (823)
T CHL00095 550 VGKTELTKALASYF--FG-SEEAMIRLD 574 (823)
T ss_pred CCHHHHHHHHHHHH--CC-CCCCEEEEC
T ss_conf 87799999999997--47-820258853
No 468
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.33 E-value=0.021 Score=36.13 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
|+||.|+.||||||+-++|.-+++
T Consensus 28 i~~i~G~NGsGKSTLlk~i~Gl~~ 51 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIMQ 51 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999999999819999999967988
No 469
>TIGR00064 ftsY signal recognition particle-docking protein FtsY; InterPro: IPR004390 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes the cell division ABC transporter and the periplasmic substrate-binding protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In Escherichia coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.; GO: 0005525 GTP binding.
Probab=94.33 E-value=0.26 Score=28.64 Aligned_cols=105 Identities=23% Similarity=0.123 Sum_probs=59.3
Q ss_pred HCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CCCCCCCCCEEEEEECCC
Q ss_conf 147999889899998744888468999999989999999999999999899999871-----677667876799952786
Q gi|254780827|r 18 HSKFSSILSKKISNQLLSFDSPIDSTEIYKIYFPLSHLLLINVNSAKITCHQYNKFL-----NLKEESKIPFVVGITGSV 92 (311)
Q Consensus 18 ~~~~~~~l~~~~~~~l~~~~d~i~~~ev~~iy~pl~~ll~~~~~~~~~~~~~~~~fl-----~~~~~~k~PfIIGIAG~~ 92 (311)
.++..+..+++=++.|+.-=-+=.+.+-.+++-=++..|.-.+.. ......++ ......+.|+||-+.|==
T Consensus 16 ~~Dv~~~~v~~i~~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~kp~Vil~VGVN 91 (284)
T TIGR00064 16 ESDVGLEVVEKIIEELKKELVGKKVKDEEKLKEILKEALKEILKE----ILDKDTLLDLEQIEELPEEKKPNVILFVGVN 91 (284)
T ss_pred HHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH----CCCCCHHHHHHHHHHCCCCCCCEEEEEEEEE
T ss_conf 850518999999999887540355770789999999999998741----1232113344334430147897799998440
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHH
Q ss_conf 667337999999999733898689995088758826
Q gi|254780827|r 93 AVGKSTFARILCILLQQISNFKVSLITTDGFLFPNA 128 (311)
Q Consensus 93 asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~ 128 (311)
|+|||||--.|...|.+- +.+|.+.--|=| +--+
T Consensus 92 G~GKTTTIaKLA~~l~~~-Gk~V~laAgDTF-RAAA 125 (284)
T TIGR00064 92 GVGKTTTIAKLANKLKKQ-GKSVLLAAGDTF-RAAA 125 (284)
T ss_pred CCCHHHHHHHHHHHHHHC-CCEEEEECCCHH-HHHH
T ss_conf 886010288999999874-990899827524-7999
No 470
>TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345 These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. .
Probab=94.30 E-value=0.082 Score=32.07 Aligned_cols=65 Identities=20% Similarity=0.345 Sum_probs=39.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 46899999998999999999999999989999987167766787679995278666733799999999973389
Q gi|254780827|r 39 PIDSTEIYKIYFPLSHLLLINVNSAKITCHQYNKFLNLKEESKIPFVVGITGSVAVGKSTFARILCILLQQISN 112 (311)
Q Consensus 39 ~i~~~ev~~iy~pl~~ll~~~~~~~~~~~~~~~~fl~~~~~~k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~ 112 (311)
.|+.+++++-..-....+.+..+. ....-|..-.+.| |.=++||||.||||+.|-+-.+......
T Consensus 330 ~i~~~~~Q~hi~eve~~~~~~l~~------~Qk~AL~~~~~~K---v~iLTGGPGTGKtT~t~~i~~~~~~~~g 394 (769)
T TIGR01448 330 AINDEDLQKHILEVEKKLRLKLSE------EQKEALKTAIQDK---VVILTGGPGTGKTTITKAIIELYEELKG 394 (769)
T ss_pred CCCHHHHHHHHHHHHHHHCCCHHH------HHHHHHHHHHCCC---EEEEECCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 778689999999868750677068------8999999986094---8998577888616899999999987168
No 471
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=94.20 E-value=0.039 Score=34.28 Aligned_cols=44 Identities=20% Similarity=0.443 Sum_probs=30.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--------------------CC--CCCEEEEEECCCCCCHH
Q ss_conf 9995278666733799999999973--------------------38--98689995088758826
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQ--------------------IS--NFKVSLITTDGFLFPNA 128 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~--------------------~~--~~~V~lis~DgF~~~n~ 128 (311)
|.||-|++||||||+.+.+.-+... .+ ..++..|.+|.-++|+-
T Consensus 26 i~~l~GpsGaGKTTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~l~~~~r~ig~vfQ~~~Lfphl 91 (352)
T PRK11144 26 ITAIFGRSGAGKTSLINLISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHY 91 (352)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCCCCCCCHHHCCEEEEECCCCCCCCC
T ss_conf 999999999629999999976899996599999999855541013767668868993576337776
No 472
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=94.19 E-value=0.035 Score=34.54 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 99952786667337999999999
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILL 107 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL 107 (311)
|.+|.|+.||||||+.+.|...+
T Consensus 24 itaivG~NGaGKSTLl~~i~~~l 46 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALKYAL 46 (204)
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 89999899999999999986304
No 473
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=94.15 E-value=0.1 Score=31.41 Aligned_cols=39 Identities=28% Similarity=0.288 Sum_probs=33.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 9995278666733799999999973389868999508875
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFL 124 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~ 124 (311)
.|+|.|-=|+||||+|--|...|++. ..||-+|-.|--+
T Consensus 2 ~iaiyGKGGVGKTTts~NLaaaLA~~-G~rVl~iD~Dp~~ 40 (212)
T cd02117 2 QIAIYGKGGIGKSTTSQNLSAALAEM-GKKVLQVGCDPKA 40 (212)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCEEEEEECCCCC
T ss_conf 59998898356877899999999986-9969999038998
No 474
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.14 E-value=0.14 Score=30.48 Aligned_cols=41 Identities=29% Similarity=0.243 Sum_probs=33.3
Q ss_pred CEEEEEECC-CCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 679995278-66673379999999997338986899950887
Q gi|254780827|r 83 PFVVGITGS-VAVGKSTFARILCILLQQISNFKVSLITTDGF 123 (311)
Q Consensus 83 PfIIGIAG~-~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF 123 (311)
|.||+|+.- =||||||+|=.|...|+...+++|-+|=+|.-
T Consensus 2 ~~iI~v~n~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDpQ 43 (259)
T COG1192 2 MKIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQ 43 (259)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 769999857888519999999999999838997899978999
No 475
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=94.14 E-value=0.094 Score=31.66 Aligned_cols=36 Identities=28% Similarity=0.533 Sum_probs=30.2
Q ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 99952-78666733799999999973389868999508
Q gi|254780827|r 85 VVGIT-GSVAVGKSTFARILCILLQQISNFKVSLITTD 121 (311)
Q Consensus 85 IIGIA-G~~asGKST~Ar~L~~lL~~~~~~~V~lis~D 121 (311)
||.|+ |--|+||||+|--|...|++.+ .+|.++-.|
T Consensus 1 vi~v~sgKgGvGkt~~~~nLa~~la~~G-~~vll~D~D 37 (139)
T cd02038 1 IIAVTSGKGGVGKTNISANLALALAKLG-KRVLLLDAD 37 (139)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHCC-CCEEEEECC
T ss_conf 9899649999839999999999999789-969999898
No 476
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=94.13 E-value=0.5 Score=26.73 Aligned_cols=108 Identities=16% Similarity=0.284 Sum_probs=55.3
Q ss_pred HHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHH--HHHH-CC--CCCEEEEEECCCCCCHHHHH---HHC-----HH
Q ss_conf 998716776678767999527866673379999999--9973-38--98689995088758826887---600-----02
Q gi|254780827|r 70 YNKFLNLKEESKIPFVVGITGSVAVGKSTFARILCI--LLQQ-IS--NFKVSLITTDGFLFPNAVLT---ANN-----LM 136 (311)
Q Consensus 70 ~~~fl~~~~~~k~PfIIGIAG~~asGKST~Ar~L~~--lL~~-~~--~~~V~lis~DgF~~~n~~l~---~~~-----l~ 136 (311)
....|+. .-..--|.-|+|.+|+|||++|-.|.. .+.. .+ +.+|.-|++.+=+-+....+ .++ .+
T Consensus 8 lD~~L~G--Gi~~G~itEi~G~~GsGKTql~lqla~~~~~~~~~~g~~~~vvyIdtE~~f~~~Rl~qia~~~~~~~~~~l 85 (235)
T cd01123 8 LDELLGG--GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVL 85 (235)
T ss_pred HHHHCCC--CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 9965079--96478799999999984999999999998424753678962999953677588999999997134724542
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEECCCCEEEEECCHHCC
Q ss_conf 018981331289999999974126640587404432256589836998689659970610035
Q gi|254780827|r 137 QRKGFPESYDSNKLLTFLSDVKSGKKKVAVPRYSHSQYDILEGEYDTIIQPDILLIEGINVLQ 199 (311)
Q Consensus 137 ~rkGfPeS~D~~~L~~~L~~lK~G~~~V~~PvYsh~~~D~vp~~~~vi~~pdIIIvEGi~vL~ 199 (311)
++--.-..+|.+.+.+.+..+..- + ..-.+..+|||..+-.+.
T Consensus 86 ~~i~~~~~~~~~~l~~~l~~l~~~---l-----------------~~~~~v~LvVIDSia~l~ 128 (235)
T cd01123 86 DNIYVARAYNSDHQLQLLEELEAI---L-----------------IESSRIKLVIVDSVTALF 128 (235)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHH---H-----------------HCCCCCEEEEEEECHHHH
T ss_conf 254796379999999999999998---7-----------------303772399996104555
No 477
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=94.12 E-value=0.091 Score=31.78 Aligned_cols=38 Identities=21% Similarity=0.195 Sum_probs=31.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 9995278666733799999999973389868999508875
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFL 124 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~ 124 (311)
=|.|.|--|+||||++.-|...|+. ..+|-+|-.|--+
T Consensus 4 ~iAiyGKGGIGKSTt~~NlaaalA~--g~rVl~igcDpk~ 41 (264)
T PRK13231 4 KIAIYGKGGIGKSTTVSNMAAAYSS--DNSTLVIGCDPKA 41 (264)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHC--CCCEEEECCCCCC
T ss_conf 8999789854788899999999987--9977998568885
No 478
>pfam01935 DUF87 Domain of unknown function DUF87. The function of this prokaryotic domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=94.11 E-value=0.1 Score=31.40 Aligned_cols=38 Identities=29% Similarity=0.357 Sum_probs=24.3
Q ss_pred EEEECCCCCCHHHHHHHH-HHHHHHCCCCCEEEEEECCCC
Q ss_conf 995278666733799999-999973389868999508875
Q gi|254780827|r 86 VGITGSVAVGKSTFARIL-CILLQQISNFKVSLITTDGFL 124 (311)
Q Consensus 86 IGIAG~~asGKST~Ar~L-~~lL~~~~~~~V~lis~DgF~ 124 (311)
+||-|++|||||.+++.| +.+++. ..-.|.++=..|=|
T Consensus 26 ~aIlg~TGsGKS~tv~vLl~~l~~~-~~~~vlVfDpHgEY 64 (218)
T pfam01935 26 FAILGSTGSGKSNTVAVLLEELLEK-KGATVLIFDPHGEY 64 (218)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC-CCCCEEEECCCCCC
T ss_conf 4787269997699999999999854-79978998288636
No 479
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=94.10 E-value=0.044 Score=33.92 Aligned_cols=43 Identities=23% Similarity=0.425 Sum_probs=31.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH--------------HC-C-CCCEEEEEECCCCCCH
Q ss_conf 999527866673379999999997--------------33-8-9868999508875882
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ--------------QI-S-NFKVSLITTDGFLFPN 127 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~--------------~~-~-~~~V~lis~DgF~~~n 127 (311)
++.+-|+|||||||+-|++.-|.. .. | +.++.+|-+..=+||+
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe~p~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPh 89 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPH 89 (338)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHCCEEEEECCCCCCCC
T ss_conf 99998999888899999996887788715999999999899557888999378301578
No 480
>pfam02283 CobU Cobinamide kinase / cobinamide phosphate guanyltransferase. This family is composed of a group of bifunctional cobalamin biosynthesis enzymes which display cobinamide kinase and cobinamide phosphate guanyltransferase activity. The crystal structure of the enzyme reveals the molecule to be a trimer with a propeller-like shape.
Probab=94.10 E-value=0.083 Score=32.03 Aligned_cols=33 Identities=30% Similarity=0.332 Sum_probs=21.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 995278666733799999999973389868999508
Q gi|254780827|r 86 VGITGSVAVGKSTFARILCILLQQISNFKVSLITTD 121 (311)
Q Consensus 86 IGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~D 121 (311)
|=|.||+.||||.+|..|. .+++.+.+-+-|+-
T Consensus 1 iLVtGG~rSGKS~~AE~la---~~~~~~~~YiAT~~ 33 (166)
T pfam02283 1 ILVTGGARSGKSRFAERLA---LASGGPVVYIATAQ 33 (166)
T ss_pred CEEECCCCCCHHHHHHHHH---HHCCCCEEEEECCC
T ss_conf 9886887733899999999---85599819997698
No 481
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.08 E-value=0.097 Score=31.57 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=25.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 999527866673379999999997338986899950887
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGF 123 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF 123 (311)
+|-|.|++|+||||++..+..-... .+.+|..+++..-
T Consensus 1 ~~li~g~~g~GKttl~~~~~~~~~~-~~~~~~~~~~ee~ 38 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT-KGGKVVYVDIEEE 38 (165)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCC
T ss_conf 9899989999899999999999876-3997999986664
No 482
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.06 E-value=0.09 Score=31.80 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=20.2
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 876799952786667337999999999
Q gi|254780827|r 81 KIPFVVGITGSVAVGKSTFARILCILL 107 (311)
Q Consensus 81 k~PfIIGIAG~~asGKST~Ar~L~~lL 107 (311)
+.|=+ =+.|++|+||||+|+.+..-|
T Consensus 35 ~~phl-Lf~GPpG~GKTt~A~~lA~~l 60 (337)
T PRK12402 35 NLPHL-VVYGPSGSGKTAAVRALAREL 60 (337)
T ss_pred CCCEE-EEECCCCCCHHHHHHHHHHHH
T ss_conf 98769-888929848999999999996
No 483
>pfam00308 Bac_DnaA Bacterial dnaA protein.
Probab=94.05 E-value=0.16 Score=30.06 Aligned_cols=42 Identities=29% Similarity=0.518 Sum_probs=31.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHH-HHHHCCCCCEEEEEECCCCC
Q ss_conf 767999527866673379999999-99733898689995088758
Q gi|254780827|r 82 IPFVVGITGSVAVGKSTFARILCI-LLQQISNFKVSLITTDGFLF 125 (311)
Q Consensus 82 ~PfIIGIAG~~asGKST~Ar~L~~-lL~~~~~~~V~lis~DgF~~ 125 (311)
.|+. |-|++|+|||.+.+.+.. ..+..++.+|..++.+.|..
T Consensus 35 npl~--i~G~~G~GKTHLLqA~~~~~~~~~~~~~v~yl~~~~~~~ 77 (219)
T pfam00308 35 NPLF--IYGGVGLGKTHLLHAIGNYALRNFPNLRVVYLTSEEFLN 77 (219)
T ss_pred CCEE--EECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHH
T ss_conf 8269--988999988899999999999849998288843999999
No 484
>KOG2655 consensus
Probab=94.05 E-value=0.041 Score=34.11 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=20.6
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 876799952786667337999999
Q gi|254780827|r 81 KIPFVVGITGSVAVGKSTFARILC 104 (311)
Q Consensus 81 k~PfIIGIAG~~asGKST~Ar~L~ 104 (311)
...|-+-++|.+|.||||+..-|.
T Consensus 19 G~~ftlmvvG~sGlGKsTfiNsLf 42 (366)
T KOG2655 19 GFDFTLMVVGESGLGKSTFINSLF 42 (366)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 873389985588763889998888
No 485
>COG1674 FtsK DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]
Probab=94.03 E-value=0.17 Score=29.92 Aligned_cols=69 Identities=26% Similarity=0.256 Sum_probs=40.4
Q ss_pred CCCCCCCEEE--------EEECCCCCCHHHHHHH-HHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCHHHCCCCHHHHHH
Q ss_conf 7667876799--------9527866673379999-999997338986899950887588268876000201898133128
Q gi|254780827|r 77 KEESKIPFVV--------GITGSVAVGKSTFARI-LCILLQQISNFKVSLITTDGFLFPNAVLTANNLMQRKGFPESYDS 147 (311)
Q Consensus 77 ~~~~k~PfII--------GIAG~~asGKST~Ar~-L~~lL~~~~~~~V~lis~DgF~~~n~~l~~~~l~~rkGfPeS~D~ 147 (311)
+.....|+++ .|||++||||||.... +..++.+.....|.++..|--- .+|..-+.....+-|-.-|.
T Consensus 516 ~~~~~~~~~~dlak~~hlli~G~tgsGKSv~lnt~i~Sll~~~~P~ev~~~~iD~k~---~~L~~~~~iPHl~~~v~td~ 592 (858)
T COG1674 516 KDIRQEPIVIDLAKAGHLLIAGATGSGKSVALNTMILSLLYTHSPEEVRFYIIDPKM---LELAAYDGLPHLGDPVVTDE 592 (858)
T ss_pred HHCCCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCHHEEEEEECCCC---CCCHHHCCCCCCCCCCCCCC
T ss_conf 003688138553568887882488865155899999998751890684999974787---54333306985577232474
Q ss_pred H
Q ss_conf 9
Q gi|254780827|r 148 N 148 (311)
Q Consensus 148 ~ 148 (311)
.
T Consensus 593 ~ 593 (858)
T COG1674 593 K 593 (858)
T ss_pred H
T ss_conf 7
No 486
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=94.00 E-value=0.083 Score=32.03 Aligned_cols=37 Identities=24% Similarity=0.380 Sum_probs=24.7
Q ss_pred CCEEEEEECCCCCCHHHHH-HHHHHHHHHCC--CCCEEEEE
Q ss_conf 7679995278666733799-99999997338--98689995
Q gi|254780827|r 82 IPFVVGITGSVAVGKSTFA-RILCILLQQIS--NFKVSLIT 119 (311)
Q Consensus 82 ~PfIIGIAG~~asGKST~A-r~L~~lL~~~~--~~~V~lis 119 (311)
.+| --|+||+|.||||+. ++|..++...+ ..+|.+..
T Consensus 162 ~~~-~vIsGGPGTGKTttV~~lLa~l~~~~~~~~l~I~LaA 201 (607)
T PRK10875 162 RRI-SVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAA 201 (607)
T ss_pred CCE-EEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf 577-8996799987788999999999996458997089988
No 487
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.99 E-value=0.087 Score=31.88 Aligned_cols=24 Identities=33% Similarity=0.627 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
|+|+-|+.|+||||+-+++.-+++
T Consensus 28 i~gllGpNGAGKSTll~~i~Gl~~ 51 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTLLK 51 (220)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999998719999999976978
No 488
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transport system, ATP-binding protein component. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=93.98 E-value=0.046 Score=33.79 Aligned_cols=103 Identities=21% Similarity=0.339 Sum_probs=58.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHH--------------HHCC--CCCEEEEEECCCCCCHHH-HH--HHCHHHCCCCHHHH
Q ss_conf 99952786667337999999999--------------7338--986899950887588268-87--60002018981331
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILL--------------QQIS--NFKVSLITTDGFLFPNAV-LT--ANNLMQRKGFPESY 145 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL--------------~~~~--~~~V~lis~DgF~~~n~~-l~--~~~l~~rkGfPeS~ 145 (311)
+++|-|+|||||||+-|.+.-|. ...+ ..++..|-+|.-+||+-. .+ .-++ ..++.|..-
T Consensus 32 ~~~llGpSG~GKtTlLr~iaGl~~p~~G~I~~~g~~v~~~~p~~R~ig~VfQ~~aLfPh~tV~eNiafgl-~~~~~~~~e 110 (353)
T TIGR03265 32 FVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGL-KNRGMGRAE 110 (353)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCCCCCCCCCHHHHHHHHH-HHCCCCHHH
T ss_conf 9999999953599999999769999873999999999999952588599978885467892999998899-876999999
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEE-------EECCCCEEEEEC
Q ss_conf 2899999999741266405874044322565898369-------986896599706
Q gi|254780827|r 146 DSNKLLTFLSDVKSGKKKVAVPRYSHSQYDILEGEYD-------TIIQPDILLIEG 194 (311)
Q Consensus 146 D~~~L~~~L~~lK~G~~~V~~PvYsh~~~D~vp~~~~-------vi~~pdIIIvEG 194 (311)
-.+...+.+..+.-+. . .-.|-+. -.-|+.+ .+..|+++++.=
T Consensus 111 ~~~rv~~~l~~~~l~~--~-~~r~p~~---LSGGq~QRVAlARAL~~~P~vlLlDE 160 (353)
T TIGR03265 111 VAERVAELLDLVGLPG--S-ERKYPGQ---LSGGQQQRVALARALATSPGLLLLDE 160 (353)
T ss_pred HHHHHHHHHHHCCCHH--H-HHCCHHH---CCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 9999999998769955--7-6569646---89888799999999854998999908
No 489
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.98 E-value=0.028 Score=35.23 Aligned_cols=24 Identities=38% Similarity=0.530 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999527866673379999999997
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQ 108 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~ 108 (311)
|+||.|+.|+||||+.++|.-++.
T Consensus 30 i~~l~G~NGaGKTTLlk~i~Gl~~ 53 (206)
T PRK13539 30 ALVLTGPNGSGKTTLLRLLAGLLP 53 (206)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999989999989999999958878
No 490
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=93.95 E-value=0.093 Score=31.72 Aligned_cols=26 Identities=31% Similarity=0.382 Sum_probs=19.7
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 876799952786667337999999999
Q gi|254780827|r 81 KIPFVVGITGSVAVGKSTFARILCILL 107 (311)
Q Consensus 81 k~PfIIGIAG~~asGKST~Ar~L~~lL 107 (311)
+.|= +=+.|++|+||||+|+.+..-+
T Consensus 36 ~~ph-lLf~GppG~GKTt~a~~la~~l 61 (318)
T PRK00440 36 NMPH-LLFAGPPGTGKTTAALALAREL 61 (318)
T ss_pred CCCE-EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9866-9888959988999999999997
No 491
>TIGR00073 hypB hydrogenase accessory protein HypB; InterPro: IPR004392 The hydrogenase accessory protein HypB is a GTP hydrolase for assembly of nickel metallocentre of hydrogenase. A similar protein, ureG, is an accessory protein for urease, which also uses nickel.; GO: 0016151 nickel ion binding, 0006461 protein complex assembly.
Probab=93.94 E-value=0.28 Score=28.42 Aligned_cols=55 Identities=18% Similarity=0.308 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC-CCCEEEEEECCCC
Q ss_conf 99998999998716776678767999527866673379999999997338-9868999508875
Q gi|254780827|r 62 SAKITCHQYNKFLNLKEESKIPFVVGITGSVAVGKSTFARILCILLQQIS-NFKVSLITTDGFL 124 (311)
Q Consensus 62 ~~~~~~~~~~~fl~~~~~~k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~-~~~V~lis~DgF~ 124 (311)
|.+.-.+.+..|.. +-=+++=+=||+||||||+ |..++.+.. +.++++|--|=-=
T Consensus 18 N~rlA~~Nr~~~~~-----~g~~~lNfmsspGSGKT~L---iEk~~~~~~~~~K~Avi~GD~~t 73 (225)
T TIGR00073 18 NDRLAEKNRERFDK-----EGLLVLNFMSSPGSGKTTL---IEKLIERLDDEVKIAVIEGDVQT 73 (225)
T ss_pred HHHHHHHHHHHHHH-----CCCEEEEECCCCCCCHHHH---HHHHHHHHCCCCCEEEEECCHHH
T ss_conf 88999999999986-----5978998025886115899---99999984578978999755322
No 492
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=93.94 E-value=0.17 Score=29.96 Aligned_cols=36 Identities=31% Similarity=0.318 Sum_probs=31.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 9995278666733799999999973389868999508
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTD 121 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~D 121 (311)
-|.|-|--|.||||++.-|.+-|+..+ .+|.+|-.|
T Consensus 2 ~iaiyGKGGIGKSTtsaNlsaaLA~~G-kkVl~IGcD 37 (271)
T CHL00072 2 KIAVYGKGGIGKSTTSCNISIALARRG-KKVLQIGCD 37 (271)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-CEEEEECCC
T ss_conf 699978985448588999999999879-979997899
No 493
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=93.92 E-value=0.13 Score=30.61 Aligned_cols=42 Identities=24% Similarity=0.104 Sum_probs=28.4
Q ss_pred CCCCEEEEEECCCCCCHHHHHH-HHHHHHHHCCCCCEEEEEECC
Q ss_conf 7876799952786667337999-999999733898689995088
Q gi|254780827|r 80 SKIPFVVGITGSVAVGKSTFAR-ILCILLQQISNFKVSLITTDG 122 (311)
Q Consensus 80 ~k~PfIIGIAG~~asGKST~Ar-~L~~lL~~~~~~~V~lis~Dg 122 (311)
-...-++-|.|++|+|||++|- .+..-+.+ .+.+|.-||++-
T Consensus 16 i~~gs~~LI~G~pGsGKT~la~qfl~~ga~~-~ge~~lYis~ee 58 (231)
T pfam06745 16 IPEGRVVLITGGPGTGKTIFGLQFLYNGALE-YGEPGVYVTLEE 58 (231)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHH-CCCCEEEEEECC
T ss_conf 8299699998589725999999999999986-589689998137
No 494
>KOG0781 consensus
Probab=93.90 E-value=0.19 Score=29.61 Aligned_cols=50 Identities=34% Similarity=0.464 Sum_probs=36.5
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHH
Q ss_conf 6787679995278666733799999999973389868999508875882688
Q gi|254780827|r 79 ESKIPFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVL 130 (311)
Q Consensus 79 ~~k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l 130 (311)
..++||+|-++|--||||||.--.+.-.|-+ .+.+|-+.-.|-| ..-++.
T Consensus 374 ~~krPYvi~fvGVNGVGKSTNLAKIayWLlq-NkfrVlIAACDTF-RsGAvE 423 (587)
T KOG0781 374 RRKRPYVISFVGVNGVGKSTNLAKIAYWLLQ-NKFRVLIAACDTF-RSGAVE 423 (587)
T ss_pred HCCCCEEEEEEEECCCCCCCHHHHHHHHHHH-CCCEEEEEECCCH-HHHHHH
T ss_conf 4689759999821476651329999999985-7836999862431-244789
No 495
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=93.89 E-value=0.15 Score=30.34 Aligned_cols=52 Identities=23% Similarity=0.268 Sum_probs=33.8
Q ss_pred HHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 9987167766787679995278666733799999999973389868999508875
Q gi|254780827|r 70 YNKFLNLKEESKIPFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFL 124 (311)
Q Consensus 70 ~~~fl~~~~~~k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~ 124 (311)
....||.- -..--|+-|+|.+|+||||+|-.+..-..+ .+.+|.-|++-++.
T Consensus 8 lD~vLgGG--i~~G~it~i~G~pG~GKStl~lq~a~~~~~-~g~~v~YidtE~~~ 59 (218)
T cd01394 8 LDELLGGG--VERGTVTQVYGPPGTGKTNIAIQLAVETAG-QGKKVAYIDTEGLS 59 (218)
T ss_pred HHHHHCCC--CCCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCC
T ss_conf 99985699--878879999899998499999999999863-69869999665567
No 496
>TIGR01188 drrA daunorubicin resistance ABC transporter, ATP-binding protein; InterPro: IPR005894 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family contains the daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. In other words it functions as an ATP dependent antiporter. .
Probab=93.88 E-value=0.049 Score=33.58 Aligned_cols=109 Identities=25% Similarity=0.276 Sum_probs=65.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCH--HHHHHH-----------------C--HHH-CCCC
Q ss_conf 79995278666733799999999973389868999508875882--688760-----------------0--020-1898
Q gi|254780827|r 84 FVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPN--AVLTAN-----------------N--LMQ-RKGF 141 (311)
Q Consensus 84 fIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n--~~l~~~-----------------~--l~~-rkGf 141 (311)
=|+|+=||=|+||||+-++|..||.-- .-++.+.--|=-=-|. .+++.- + +|. =+|.
T Consensus 22 ~vfGfLGPNGAGKTTti~mLtTll~P~-sG~A~V~GYDvvreP~kl~VRr~IG~v~Q~~s~D~~LTg~ENl~m~g~LyGl 100 (343)
T TIGR01188 22 EVFGFLGPNGAGKTTTIRMLTTLLKPT-SGTARVAGYDVVREPRKLKVRRRIGIVPQYASVDEDLTGRENLVMMGRLYGL 100 (343)
T ss_pred EEEEEECCCCCCHHHHHHHHCCCCCCC-CCEEEEEEEECCCCHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 489976879985133563410255799-8768998321023630403211320446855556457747544453333489
Q ss_pred HHHHHHHHHHHHHHHHHCCC-CEEEEECCCCCCCCCCCCCEEEECCCCEEEEE
Q ss_conf 13312899999999741266-40587404432256589836998689659970
Q gi|254780827|r 142 PESYDSNKLLTFLSDVKSGK-KKVAVPRYSHSQYDILEGEYDTIIQPDILLIE 193 (311)
Q Consensus 142 PeS~D~~~L~~~L~~lK~G~-~~V~~PvYsh~~~D~vp~~~~vi~~pdIIIvE 193 (311)
|+.---+.-.+.|..+-=+. ..-.+=.||=--=-|+.=..-.|.+|+|+-+.
T Consensus 101 p~~~~~~Ra~ELLe~~~L~~aa~r~V~tySGGMrRRL~iA~sli~~P~vLFLD 153 (343)
T TIGR01188 101 PKKEAEERAEELLELFELTEAADRKVKTYSGGMRRRLEIAASLIHQPEVLFLD 153 (343)
T ss_pred CHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCEEHHHHHHHHHCCCCEEECC
T ss_conf 68999988888762300146625433226771121445431110388256514
No 497
>TIGR00763 lon ATP-dependent protease La; InterPro: IPR004815 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This signature defines the bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). This family of sequences does not include the archaeal lon homologs, IPR004663 from INTERPRO. In the eukaryotes the majority of the proteins are located in the mitochondrial matrix , . In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response .; GO: 0004176 ATP-dependent peptidase activity, 0005524 ATP binding, 0006510 ATP-dependent proteolysis.
Probab=93.88 E-value=0.15 Score=30.38 Aligned_cols=84 Identities=18% Similarity=0.269 Sum_probs=49.1
Q ss_pred HHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCHHHCC-CC-HHH
Q ss_conf 9999987167766787679995278666733799999999973389868999508875882688760002018-98-133
Q gi|254780827|r 67 CHQYNKFLNLKEESKIPFVVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTANNLMQRK-GF-PES 144 (311)
Q Consensus 67 ~~~~~~fl~~~~~~k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~~~l~~rk-Gf-PeS 144 (311)
.+.+.--|. ...+-|-|+.-.||+|||||.+|+=+..-|.| +=.-+|.=|- .+=++. ||-.-.+ |. |+
T Consensus 436 rrkkkPkL~--~~~~GpqIlClvGPPGVGKTSlg~SIA~ALnR----kFvR~SlGG~-~DeAEI--rGHRRTYvGAMPG- 505 (941)
T TIGR00763 436 RRKKKPKLR--GKMKGPQILCLVGPPGVGKTSLGKSIAKALNR----KFVRFSLGGV-RDEAEI--RGHRRTYVGAMPG- 505 (941)
T ss_pred HHHCCCCCC--CCCCCCEEEEEECCCCCCHHHHHHHHHHHHCC----EEEEEEECCC-EEHHHC--CCCCCCCCCCCHH-
T ss_conf 640364447--78888767872072695422278999999688----0499952672-203112--7864320346725-
Q ss_pred HHHHHHHHHHHHHHCCCCEE
Q ss_conf 12899999999741266405
Q gi|254780827|r 145 YDSNKLLTFLSDVKSGKKKV 164 (311)
Q Consensus 145 ~D~~~L~~~L~~lK~G~~~V 164 (311)
.+++.|++.+.-++-+
T Consensus 506 ----riiQ~lk~~~t~NPl~ 521 (941)
T TIGR00763 506 ----RIIQGLKKAKTKNPLI 521 (941)
T ss_pred ----HHHHHHHHCCCCCCEE
T ss_conf ----7899987604158806
No 498
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=93.84 E-value=0.082 Score=32.06 Aligned_cols=68 Identities=22% Similarity=0.221 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC-CCCEEE
Q ss_conf 689999999899999999999999998999998716776678767999527866673379999999997338-986899
Q gi|254780827|r 40 IDSTEIYKIYFPLSHLLLINVNSAKITCHQYNKFLNLKEESKIPFVVGITGSVAVGKSTFARILCILLQQIS-NFKVSL 117 (311)
Q Consensus 40 i~~~ev~~iy~pl~~ll~~~~~~~~~~~~~~~~fl~~~~~~k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~-~~~V~l 117 (311)
+++--....-+.|..|+ +++.+......||..--..+ -=|=||||.||||||+... |+...+ +.+|.+
T Consensus 137 lsIRKf~k~~ltl~dli-----~~gt~~~~~a~~L~~av~~r--~NILisGGTGSGKTTlLNa---l~~~i~~~eRvIt 205 (355)
T COG4962 137 LSIRKFPKIKLTLLDLI-----IFGTMIRRAAKFLRRAVGIR--CNILISGGTGSGKTTLLNA---LSGFIDSDERVIT 205 (355)
T ss_pred CCCCCCCCCCCCHHHHH-----HCCCCCHHHHHHHHHHHHHC--EEEEEECCCCCCHHHHHHH---HHHCCCCCCEEEE
T ss_conf 04412565525599998-----73895889999999998620--1599967878879999999---9715797650899
No 499
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.84 E-value=0.41 Score=27.36 Aligned_cols=141 Identities=15% Similarity=0.158 Sum_probs=66.4
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCC-CCCEEEEEECCCCCCHHHHH-HHCH-----HHCCCCHHHHHHHHHHHH
Q ss_conf 8767999527866673379999999997338-98689995088758826887-6000-----201898133128999999
Q gi|254780827|r 81 KIPFVVGITGSVAVGKSTFARILCILLQQIS-NFKVSLITTDGFLFPNAVLT-ANNL-----MQRKGFPESYDSNKLLTF 153 (311)
Q Consensus 81 k~PfIIGIAG~~asGKST~Ar~L~~lL~~~~-~~~V~lis~DgF~~~n~~l~-~~~l-----~~rkGfPeS~D~~~L~~~ 153 (311)
+.=|.+-+-||+||||||+- ...+.++. ..++.+|.-|=.---.+++- +.|. -.-+| =-.|..+..+-
T Consensus 102 ~gv~~lNl~sSPGSGKTtLL---e~ti~~L~~~~~~aVIeGD~~T~~DA~RI~~~Gv~avQInTG~~--CHLDA~MV~~a 176 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLL---TETLMRLKDSVPCAVIEGDQQTVNDAARIRATGTPAIQVNTGKG--CHLDAQMIADA 176 (290)
T ss_pred CCCEEEEECCCCCCCHHHHH---HHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCC--CCCCHHHHHHH
T ss_conf 79189993069987889999---99999873367579996042356679999976995899547997--67599999999
Q ss_pred HHHHHCCCCEEEEECCCCCCCC-CCCCCEEEECCCCEEE---EECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHH
Q ss_conf 9974126640587404432256-5898369986896599---70610035765457577740100023115773088999
Q gi|254780827|r 154 LSDVKSGKKKVAVPRYSHSQYD-ILEGEYDTIIQPDILL---IEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADKRD 229 (311)
Q Consensus 154 L~~lK~G~~~V~~PvYsh~~~D-~vp~~~~vi~~pdIII---vEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~ 229 (311)
|.+|.-..-.+-+ =-..+. +.|..+..=+...|+| -||----.. ++.-.....+.+-+-.|+.=|+|-|.+.
T Consensus 177 l~~l~l~~~dllf---IENVGNLVCPA~FDLGE~~kVvvlSVtEGeDKPlK-YP~mF~~ad~vlinKiDLlp~~dFD~~~ 252 (290)
T PRK10463 177 APRLPLDDNGILF---IENVGNLVCPASFDLGEKHKVAVLSVTEGEDKPLK-YPHMFAAASLMLLNKVDLLPYLNFDVEK 252 (290)
T ss_pred HHHCCCCCCCEEE---EECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCC-CHHHHHHCCEEEEEHHHHHHHCCCCHHH
T ss_conf 9848987798999---81278843551203677617999970688886444-7667642578998656512202889999
Q ss_pred H
Q ss_conf 8
Q gi|254780827|r 230 I 230 (311)
Q Consensus 230 i 230 (311)
.
T Consensus 253 ~ 253 (290)
T PRK10463 253 C 253 (290)
T ss_pred H
T ss_conf 9
No 500
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=93.83 E-value=0.4 Score=27.45 Aligned_cols=45 Identities=24% Similarity=0.412 Sum_probs=32.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHH
Q ss_conf 999527866673379999999997338986899950887588268876
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTA 132 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~ 132 (311)
|+.++|.+|||||+++|.+.+. +.+.++++|..|.=....+.+-+
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s---~~~d~~~~v~i~~~~~s~~~~~~ 97 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLAS---LNEDQVAVVVIDKPTLSDATLLE 97 (269)
T ss_pred EEEEEECCCCCHHHHHHHHHHH---CCCCCEEEEEECCCCHHHHHHHH
T ss_conf 5999744777636999999985---57885179983576301788999
Done!