HHsearch alignment for GI: 254780827 and conserved domain: pfam02223
>pfam02223 Thymidylate_kin Thymidylate kinase.
Probab=95.68 E-value=0.11 Score=31.34 Aligned_cols=128 Identities=23% Similarity=0.201 Sum_probs=58.4
Q ss_pred EECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCHHHC-CCCHHHH------HH-HHHHHH-HHHHH
Q ss_conf 527866673379999999997338986899950887588268876000201-8981331------28-999999-99741
Q gi|254780827|r 88 ITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTANNLMQR-KGFPESY------DS-NKLLTF-LSDVK 158 (311)
Q Consensus 88 IAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~~~l~~r-kGfPeS~------D~-~~L~~~-L~~lK 158 (311)
T Consensus 1 ~EGiDGsGKsTq~~~L~~~L~~~g-~~v~~~~ep~~-~~~g~~ir~~l~~~~~~~~~~~~llf~adR~~~~~~~i~~~l~ 78 (186)
T pfam02223 1 IEGLDGAGKTTQAELLKERLKEQG-IKVVLTREPGG-TPIGEKIRELLLRNEELSPLTEALLFAADRIEHLEEKIKPALK 78 (186)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCC-CEEEEEECCCC-CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 979999899999999999999879-90899749999-8379999999850125899999999999999999999999997
Q ss_pred CCCCEEEEECCCC--CCCCCCCCCEEEECCCCEEEEECCHHCCCCCCCCCCCCCEEECCCCCEEEEEECCHHHHHHHHHH
Q ss_conf 2664058740443--22565898369986896599706100357654575777401000231157730889998879988
Q gi|254780827|r 159 SGKKKVAVPRYSH--SQYDILEGEYDTIIQPDILLIEGINVLQQNSLSDNQKATPMISDFLDFSIYIDADKRDIHRWYLN 236 (311)
Q Consensus 159 ~G~~~V~~PvYsh--~~~D~vp~~~~vi~~pdIIIvEGi~vL~~~~l~~~~~~~~~vsD~fD~sIyVDad~~~i~~wyi~ 236 (311)
T Consensus 79 ~g~-~VI~DRy~~S~~ayq~~~------~~~~~---~~i~~l~~~~~----~~------~PDlti~Ldv~pe~~~~Ri~~ 138 (186)
T pfam02223 79 QGK-TVICDRYLFSSIAYQGAA------GGLGL---DLVLSLNPDVP----GP------KPDLTFLLDVDPEVALKRLRR 138 (186)
T ss_pred CCC-EEEEECCCCCHHHHHHHC------CCCCH---HHHHHHHHHCC----CC------CCCEEEEEECCHHHHHHHHHH
T ss_conf 699-899607313489987620------47789---99999987206----78------999899983899999999986
Q ss_pred H
Q ss_conf 7
Q gi|254780827|r 237 R 237 (311)
Q Consensus 237 R 237 (311)
T Consensus 139 R 139 (186)
T pfam02223 139 R 139 (186)
T ss_pred C
T ss_conf 6