HHsearch alignment for GI: 254780827 and conserved domain: pfam03796
>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.91 E-value=0.051 Score=33.48 Aligned_cols=111 Identities=11% Similarity=0.131 Sum_probs=57.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCHHHCCCCH---------HHHHHHHHHHHHH
Q ss_conf 9995278666733799999999973389868999508875882688760002018981---------3312899999999
Q gi|254780827|r 85 VVGITGSVAVGKSTFARILCILLQQISNFKVSLITTDGFLFPNAVLTANNLMQRKGFP---------ESYDSNKLLTFLS 155 (311)
Q Consensus 85 IIGIAG~~asGKST~Ar~L~~lL~~~~~~~V~lis~DgF~~~n~~l~~~~l~~rkGfP---------eS~D~~~L~~~L~ 155 (311)
T Consensus 21 l~vi~g~pg~GKS~~~~~~a~~~a~~~g~~Vl~~slE---m~~~~~~~R~~a~~~~v~~~~i~~~~~~~~~~~~~~~~~~ 97 (186)
T pfam03796 21 LIIIAARPSMGKTAFALNIARNAALKQDKPVLFFSLE---MSAEQLAERLLSSESRISSSKLRSGQLSDEDWERLAEAAG 97 (186)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCC---CCHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 7999967999879999999999999709966875475---5299999999998626765554125121679999999999
Q ss_pred HHHCCCCEEEEECCCCCCC---CCCC--CCEEEECCCCEEEEECCHHCCCCC
Q ss_conf 7412664058740443225---6589--836998689659970610035765
Q gi|254780827|r 156 DVKSGKKKVAVPRYSHSQY---DILE--GEYDTIIQPDILLIEGINVLQQNS 202 (311)
Q Consensus 156 ~lK~G~~~V~~PvYsh~~~---D~vp--~~~~vi~~pdIIIvEGi~vL~~~~ 202 (311)
T Consensus 98 ~~~~~--~l--~i~~~~~~t~~~i~~~i~~~~~~~~~~~vvvDyl~l~~~~~ 145 (186)
T pfam03796 98 ELSEA--PL--YIDDTPGLSLSELRAQARRLKREHGLGLIVIDYLQLMQGSK 145 (186)
T ss_pred HHHCC--CE--EEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCC
T ss_conf 98539--86--88479999899999999999985599889974898636778