HHsearch alignment for GI: 254780827 and conserved domain: pfam05049
>pfam05049 IIGP Interferon-inducible GTPase (IIGP). Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing.
Probab=95.34 E-value=0.023 Score=35.82 Aligned_cols=41 Identities=27% Similarity=0.367 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 9989999987167766787679995278666733799999999
Q gi|254780827|r 64 KITCHQYNKFLNLKEESKIPFVVGITGSVAVGKSTFARILCIL 106 (311)
Q Consensus 64 ~~~~~~~~~fl~~~~~~k~PfIIGIAG~~asGKST~Ar~L~~l 106 (311)
T Consensus 18 ~~a~s~I~e~L~--~~~~~~lnIavtGesG~GkSsfINalRg~ 58 (375)
T pfam05049 18 QKVVSIIKKAIQ--EISSAPLKIAVTGDSGNGKSSFINALRGI 58 (375)
T ss_pred HHHHHHHHHHHH--HHHCCCEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999997--54438247998548998678999987478