HHsearch alignment for GI: 254780827 and conserved domain: pfam06309
>pfam06309 Torsin Torsin. This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterized by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of (pfam00004) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia.
Probab=96.06 E-value=0.036 Score=34.49 Aligned_cols=73 Identities=18% Similarity=0.225 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH-HH-CCCCCEEE-EEECCC
Q ss_conf 9999999999999999899999871677667876799952786667337999999999-73-38986899-950887
Q gi|254780827|r 50 FPLSHLLLINVNSAKITCHQYNKFLNLKEESKIPFVVGITGSVAVGKSTFARILCILL-QQ-ISNFKVSL-ITTDGF 123 (311)
Q Consensus 50 ~pl~~ll~~~~~~~~~~~~~~~~fl~~~~~~k~PfIIGIAG~~asGKST~Ar~L~~lL-~~-~~~~~V~l-is~DgF 123 (311)
T Consensus 21 ~~L~~~lfGQhla~~~v~~al~~~l~~-~~p~KpLVlSfHG~tGtGKn~vs~liA~~Ly~~G~~S~~Vh~fi~~~hF 96 (127)
T pfam06309 21 RDLARRLFGQHLVKQLVVRSVKGHWEN-PKPRKPLVLSFHGWTGTGKNFVAEIIADNLYRDGLRSPYVHHFVATNHF 96 (127)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHCC-CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCC
T ss_conf 999875347798999999999999748-9999974887018999879899999999987543478756884242248