HHsearch alignment for GI: 254780827 and conserved domain: pfam06745
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=93.92 E-value=0.13 Score=30.61 Aligned_cols=42 Identities=24% Similarity=0.104 Sum_probs=28.4
Q ss_pred CCCCEEEEEECCCCCCHHHHHH-HHHHHHHHCCCCCEEEEEECC
Q ss_conf 7876799952786667337999-999999733898689995088
Q gi|254780827|r 80 SKIPFVVGITGSVAVGKSTFAR-ILCILLQQISNFKVSLITTDG 122 (311)
Q Consensus 80 ~k~PfIIGIAG~~asGKST~Ar-~L~~lL~~~~~~~V~lis~Dg 122 (311)
T Consensus 16 i~~gs~~LI~G~pGsGKT~la~qfl~~ga~~-~ge~~lYis~ee 58 (231)
T pfam06745 16 IPEGRVVLITGGPGTGKTIFGLQFLYNGALE-YGEPGVYVTLEE 58 (231)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHH-CCCCEEEEEECC
T ss_conf 8299699998589725999999999999986-589689998137