HHsearch alignment for GI: 254780828 and conserved domain: COG0638
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones].
Probab=100.00 E-value=1.9e-33 Score=228.95 Aligned_cols=179 Identities=22% Similarity=0.145 Sum_probs=155.0
Q ss_pred CCEEECCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHC--CCC
Q ss_conf 817763717999997997999813654505367744510579815975999731305889999999999999853--665
Q gi|254780828|r 9 YAVKMHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYP--NQL 86 (190)
Q Consensus 9 ~~~~~~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~--~~~ 86 (190)
T Consensus 24 ~a~~~~gtT~vgik~kdgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~-~sG~~aDa~~lv~~~r~~a~~~~~~~~~ 102 (236)
T COG0638 24 EAVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMA-IAGLAADAQVLVRYARAEAQLYRLRYGE 102 (236)
T ss_pred HHHHCCCCEEEEEEECCEEEEEEECCCCCCCEECCCCCCEEEEECCCEEEE-ECCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 666517955999994999999993577777731056763499977988999-4527688999999999999987997199
Q ss_pred CCCHHHHHHHHHHHHHHHHC--CCE-----EEECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCHH
Q ss_conf 63067999999761122201--310-----45137876469980586311413279960642345788985207899989
Q gi|254780828|r 87 LRSSVELAKDWRMDKYLRNL--EAM-----ILIADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAE 159 (190)
Q Consensus 87 ~~~~~~~~~~~~~~~y~~~~--~~~-----~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa~ 159 (190)
T Consensus 103 ~i~v~~la~~ls~~l~~~~~~~rP~gv~~iiaG~d~~~p~Ly~~Dp~G~~~~~~~~a~Gsgs~~a~~~Le~~y~~~m~~e 182 (236)
T COG0638 103 PISVEALAKLLSNILQEYTQSGRPYGVSLLVAGVDDGGPRLYSTDPSGSYNEYKATAIGSGSQFAYGFLEKEYREDLSLE 182 (236)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCEEEEECCCCCEEECCEEEECCCHHHHHHHHHHHCCCCCCHH
T ss_conf 89999999999999998432667760799999971898679998899856617979985775899999997344699989
Q ss_pred H---HHHHHHHHHHCCCEEECCCEEEEEEECC
Q ss_conf 9---9999999754011022595699999417
Q gi|254780828|r 160 E---IARKAMSIAADICVYTNHNIVLETLKVG 188 (190)
Q Consensus 160 e---la~~Al~~A~erDvyTgd~i~i~~i~~~ 188 (190)
T Consensus 183 eai~la~~al~~a~~rd~~s~~~~~v~vi~~~ 214 (236)
T COG0638 183 EAIELAVKALRAAIERDAASGGGIEVAVITKD 214 (236)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCEEEEEECC
T ss_conf 99999999999998434556898189999858