HHsearch alignment for GI: 254780828 and conserved domain: COG3484
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones].
Probab=96.68 E-value=0.015 Score=35.69 Aligned_cols=150 Identities=16% Similarity=0.134 Sum_probs=92.9
Q ss_pred EEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEE---CCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 1799999799799981365450536774451057981---5975999731305889999999999999853665630679
Q gi|254780828|r 16 TTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRL---GKGNIIAGFAGSSADAFTLLERLEKKLEQYPNQLLRSSVE 92 (190)
Q Consensus 16 TTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i---~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (190)
T Consensus 2 TYCv~l~l~~GlVf~sDsRTNAGvD~i-stfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~n~~s 80 (255)
T COG3484 2 TYCVGLILDFGLVFGSDSRTNAGVDYI-STFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDERIQRDDGDSLLNIPS 80 (255)
T ss_pred CEEEEEEECCCEEEECCCCCCCCCHHH-HHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHCCHH
T ss_conf 268999841653883156645570678-8877775105888659999705750889999999998863144055534514
Q ss_pred HHHHH------HHHHHHH----------H-CCCEEEE--CCCCCCEEEEECCCCCE----ECCCEEEEECCHHHHHHHHH
Q ss_conf 99999------7611222----------0-1310451--37876469980586311----41327996064234578898
Q gi|254780828|r 93 LAKDW------RMDKYLR----------N-LEAMILI--ADKTITLVITGMGDVLE----PENGVMAIGSGGSYALSAAR 149 (190)
Q Consensus 93 ~~~~~------~~~~y~~----------~-~~~~~~~--~~~~~~~~~~~d~~g~~----~~~~~~a~GSGs~~A~g~Le 149 (190)
T Consensus 81 m~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~pp~Ly~IYpqGNFIqaT~etpf~QiGE-tKYGKPild 159 (255)
T COG3484 81 MYEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGEPPRLYLIYPQGNFIQATPETPFLQIGE-TKYGKPILD 159 (255)
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHCCCCCEEEEEEECCEECCCCCEEEEECCCCCEEECCCCCCEEECCC-CCCCCHHHH
T ss_conf 9899999988899998623710111686436889970332699960489715787245589985167143-125860100
Q ss_pred HHHCCCCCHHHHHHHHHH
Q ss_conf 520789998999999999
Q gi|254780828|r 150 ALMSTQNSAEEIARKAMS 167 (190)
Q Consensus 150 ~~y~~~~sa~ela~~Al~ 167 (190)
T Consensus 160 R~i~~~~pLeea~kcaLv 177 (255)
T COG3484 160 RTITYDTPLEEAAKCALV 177 (255)
T ss_pred HHHHCCCCHHHHHHHEEE
T ss_conf 011136878997410077