HHsearch alignment for GI: 254780828 and conserved domain: cd01911
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=99.96 E-value=3.7e-28 Score=195.92 Aligned_cols=169 Identities=18% Similarity=0.113 Sum_probs=140.9
Q ss_pred CCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCC--CCCCHH
Q ss_conf 371799999799799981365450536774451057981597599973130588999999999999985366--563067
Q gi|254780828|r 14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPNQ--LLRSSV 91 (190)
Q Consensus 14 ~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~~--~~~~~~ 91 (190)
T Consensus 26 ~GtT~Vgik~~~gVvlaad~r~~-~~~~~~~~~~Ki~~I~~~i~~~-~sG~~~D~~~l~~~~r~~~~~~~~~~g~~i~v~ 103 (209)
T cd01911 26 NGSTAVGIKGKDGVVLAVEKKVT-SKLLDPSSVEKIFKIDDHIGCA-VAGLTADARVLVNRARVEAQNYRYTYGEPIPVE 103 (209)
T ss_pred CCCCEEEEEECCEEEEEEECCCC-CCCCCCCCCCEEEEECCCEEEE-EEECHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 49858999938879999951357-4440255555499971858999-984328899999999999999999829998799
Q ss_pred HHHHHHHHHH-------HHHHCCC--EEEECCC-CCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCHH--
Q ss_conf 9999997611-------2220131--0451378-76469980586311413279960642345788985207899989--
Q gi|254780828|r 92 ELAKDWRMDK-------YLRNLEA--MILIADK-TITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAE-- 159 (190)
Q Consensus 92 ~~~~~~~~~~-------y~~~~~~--~~~~~~~-~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa~-- 159 (190)
T Consensus 104 ~la~~is~~~q~~t~~~~~RP~g~s~ii~G~D~~~g~~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~~ea 183 (209)
T cd01911 104 VLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGPQLYQTDPSGTYFGYKATAIGKGSQEAKTFLEKRYKKDLTLEEA 183 (209)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCEEEEECCCCCEEEEEEEEECCCHHHHHHHHHHHCCCCCCHHHH
T ss_conf 99999999999976303544652479999896699977999858986885237998988699999999863479999999
Q ss_pred -HHHHHHHHHHHCCCEEECCCEEEEEE
Q ss_conf -99999999754011022595699999
Q gi|254780828|r 160 -EIARKAMSIAADICVYTNHNIVLETL 185 (190)
Q Consensus 160 -ela~~Al~~A~erDvyTgd~i~i~~i 185 (190)
T Consensus 184 i~la~~al~~a~~~d~-~~~~iei~ii 209 (209)
T cd01911 184 IKLALKALKEVLEEDK-KAKNIEIAVV 209 (209)
T ss_pred HHHHHHHHHHHHHCCC-CCCCEEEEEC
T ss_conf 9999999999984679-9787799979