HHsearch alignment for GI: 254780828 and conserved domain: cd01912
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.8e-32 Score=218.87 Aligned_cols=172 Identities=23% Similarity=0.171 Sum_probs=150.7
Q ss_pred EEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHC--CCCCCCHHHH
Q ss_conf 17999997997999813654505367744510579815975999731305889999999999999853--6656306799
Q gi|254780828|r 16 TTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYP--NQLLRSSVEL 93 (190)
Q Consensus 16 TTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~--~~~~~~~~~~ 93 (190)
T Consensus 1 tTvvai~~~dgVvlaaD~r~t~g~~~~~~~~~Ki~~i~~~~~~~-~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 79 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLG-TAGSAADTQALTRLLKRNLRLYELRNGRELSVKAA 79 (189)
T ss_pred CCEEEEEECCEEEEEECCCCCCCCEEECCCCCEEEEECCCEEEE-ECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 93999997999999984875678600057643499975838998-34665889999999999999989973998758999
Q ss_pred HHHHHHHHHHHHCCCE-----EEECCC-CCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCC---HHHHHHH
Q ss_conf 9999761122201310-----451378-764699805863114132799606423457889852078999---8999999
Q gi|254780828|r 94 AKDWRMDKYLRNLEAM-----ILIADK-TITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNS---AEEIARK 164 (190)
Q Consensus 94 ~~~~~~~~y~~~~~~~-----~~~~~~-~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~s---a~ela~~ 164 (190)
T Consensus 80 a~~l~~~l~~~~~~p~~v~~iv~G~D~~~~p~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~eea~~l~~~ 159 (189)
T cd01912 80 ANLLSNILYSYRGFPYYVSLIVGGVDKGGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRGYKPDMTLEEAVELVKK 159 (189)
T ss_pred HHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEEEECCCEEEEEEEEEECCCCHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 99999999974799962688999985999828999967818999988998168077899999665699699999999999
Q ss_pred HHHHHHCCCEEECCCEEEEEEECC
Q ss_conf 999754011022595699999417
Q gi|254780828|r 165 AMSIAADICVYTNHNIVLETLKVG 188 (190)
Q Consensus 165 Al~~A~erDvyTgd~i~i~~i~~~ 188 (190)
T Consensus 160 ~l~~~~~rd~~sg~~~~v~vi~~d 183 (189)
T cd01912 160 AIDSAIERDLSSGGGVDVAVITKD 183 (189)
T ss_pred HHHHHHHHCCCCCCCEEEEEECCC
T ss_conf 999999846777995799999388