HHsearch alignment for GI: 254780828 and conserved domain: cd01913
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=100.00 E-value=4.3e-32 Score=220.50 Aligned_cols=170 Identities=73% Similarity=1.118 Sum_probs=165.8
Q ss_pred EEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 17999997997999813654505367744510579815975999731305889999999999999853665630679999
Q gi|254780828|r 16 TTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPNQLLRSSVELAK 95 (190)
Q Consensus 16 TTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (190)
T Consensus 1 TTIl~Vr~~g~vaiagDGQvT~G~~v~K~~A~KVRrl~~g~vlaGFAGstADAftL~erfE~KLe~~~g~L~raaVELAK 80 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLRAAVELAK 80 (171)
T ss_pred CEEEEEEECCEEEEEECCEEEECCEEECCCCEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 97999998999999957733256787837704999947997999735617889999999999999775820799999998
Q ss_pred HHHHHHHHHHCCCEEEECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCE
Q ss_conf 9976112220131045137876469980586311413279960642345788985207-899989999999997540110
Q gi|254780828|r 96 DWRMDKYLRNLEAMILIADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMS-TQNSAEEIARKAMSIAADICV 174 (190)
Q Consensus 96 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~-~~~sa~ela~~Al~~A~erDv 174 (190)
T Consensus 81 ~WRtDk~LRrLEAmlivad~~~~l~iSG~GdViEP~~~i~aIGSGg~yA~aAArAL~~~~~l~A~~Ia~~sl~IAa~ici 160 (171)
T cd01913 81 DWRTDRYLRRLEAMLIVADKEHTLLISGNGDVIEPDDGIAAIGSGGNYALAAARALLDHTDLSAEEIARKALKIAADICI 160 (171)
T ss_pred HHHHHHHHHHHHHHEEEECCCCEEEEECCCCEECCCCCEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHEEE
T ss_conf 86122888877735057756748999268656778887689728769999999998764899999999999998862578
Q ss_pred EECCCEEEEEE
Q ss_conf 22595699999
Q gi|254780828|r 175 YTNHNIVLETL 185 (190)
Q Consensus 175 yTgd~i~i~~i 185 (190)
T Consensus 161 yTN~n~~ie~l 171 (171)
T cd01913 161 YTNHNITVEEL 171 (171)
T ss_pred ECCCCEEEEEC
T ss_conf 60896899859