HHsearch alignment for GI: 254780828 and conserved domain: cd01913

>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=100.00  E-value=4.3e-32  Score=220.50  Aligned_cols=170  Identities=73%  Similarity=1.118  Sum_probs=165.8

Q ss_pred             EEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf             17999997997999813654505367744510579815975999731305889999999999999853665630679999
Q gi|254780828|r   16 TTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPNQLLRSSVELAK   95 (190)
Q Consensus        16 TTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (190)
T Consensus         1 TTIl~Vr~~g~vaiagDGQvT~G~~v~K~~A~KVRrl~~g~vlaGFAGstADAftL~erfE~KLe~~~g~L~raaVELAK   80 (171)
T cd01913           1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLRAAVELAK   80 (171)
T ss_pred             CEEEEEEECCEEEEEECCEEEECCEEECCCCEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             97999998999999957733256787837704999947997999735617889999999999999775820799999998


Q ss_pred             HHHHHHHHHHCCCEEEECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCE
Q ss_conf             9976112220131045137876469980586311413279960642345788985207-899989999999997540110
Q gi|254780828|r   96 DWRMDKYLRNLEAMILIADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMS-TQNSAEEIARKAMSIAADICV  174 (190)
Q Consensus        96 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~-~~~sa~ela~~Al~~A~erDv  174 (190)
T Consensus        81 ~WRtDk~LRrLEAmlivad~~~~l~iSG~GdViEP~~~i~aIGSGg~yA~aAArAL~~~~~l~A~~Ia~~sl~IAa~ici  160 (171)
T cd01913          81 DWRTDRYLRRLEAMLIVADKEHTLLISGNGDVIEPDDGIAAIGSGGNYALAAARALLDHTDLSAEEIARKALKIAADICI  160 (171)
T ss_pred             HHHHHHHHHHHHHHEEEECCCCEEEEECCCCEECCCCCEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHEEE
T ss_conf             86122888877735057756748999268656778887689728769999999998764899999999999998862578


Q ss_pred             EECCCEEEEEE
Q ss_conf             22595699999
Q gi|254780828|r  175 YTNHNIVLETL  185 (190)
Q Consensus       175 yTgd~i~i~~i  185 (190)
T Consensus       161 yTN~n~~ie~l  171 (171)
T cd01913         161 YTNHNITVEEL  171 (171)
T ss_pred             ECCCCEEEEEC
T ss_conf             60896899859