HHsearch alignment for GI: 254780828 and conserved domain: cd03750
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.96 E-value=1.1e-27 Score=192.87 Aligned_cols=172 Identities=15% Similarity=0.056 Sum_probs=144.9
Q ss_pred CCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCC--CCCCHH
Q ss_conf 371799999799799981365450536774451057981597599973130588999999999999985366--563067
Q gi|254780828|r 14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPNQ--LLRSSV 91 (190)
Q Consensus 14 ~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~~--~~~~~~ 91 (190)
T Consensus 26 ~G~t~VGik~~dgVVla~~kr~~-s~l~~~~~~~Ki~~I~~~Ig~~-~sG~~~D~~~lv~~~r~~a~~~~~~~~~~i~v~ 103 (227)
T cd03750 26 SGAPSVGIKAANGVVLATEKKVP-SPLIDESSVHKVEQITPHIGMV-YSGMGPDFRVLVKKARKIAQQYYLVYGEPIPVS 103 (227)
T ss_pred CCCCEEEEEECCEEEEEEECCCC-CCCCCCCCCCCEEEECCCEEEE-EEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 48878999959999999950577-7445876501189965975899-962560089999999999999999969973499
Q ss_pred HHHHHHHHHH-------HHHHCCCE--EEECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCHHH--
Q ss_conf 9999997611-------22201310--451378764699805863114132799606423457889852078999899--
Q gi|254780828|r 92 ELAKDWRMDK-------YLRNLEAM--ILIADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAEE-- 160 (190)
Q Consensus 92 ~~~~~~~~~~-------y~~~~~~~--~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa~e-- 160 (190)
T Consensus 104 ~l~~~ls~~~q~~tq~~~~RPfgvslli~G~D~~gp~Ly~~dPsG~~~~~~a~aiG~~s~~a~~~LEk~~~~~ms~eeai 183 (227)
T cd03750 104 QLVREIASVMQEYTQSGGVRPFGVSLLIAGWDEGGPYLYQVDPSGSYFTWKATAIGKNYSNAKTFLEKRYNEDLELEDAI 183 (227)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCEEEEECCCCCEECCCEEECCCCHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 99999999999973457725754067999981898789997799877623289757332999999998654899999999
Q ss_pred -HHHHHHHHHHCCCEEECCCEEEEEEECC
Q ss_conf -9999999754011022595699999417
Q gi|254780828|r 161 -IARKAMSIAADICVYTNHNIVLETLKVG 188 (190)
Q Consensus 161 -la~~Al~~A~erDvyTgd~i~i~~i~~~ 188 (190)
T Consensus 184 ~lai~aL~~~~~~~~-~~~~ievavi~~~ 211 (227)
T cd03750 184 HTAILTLKEGFEGQM-TEKNIEIGICGET 211 (227)
T ss_pred HHHHHHHHHHHHCCC-CCCEEEEEEEECC
T ss_conf 999999999972669-9880899999789