HHsearch alignment for GI: 254780828 and conserved domain: cd03751
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.94 E-value=2e-25 Score=178.87 Aligned_cols=170 Identities=19% Similarity=0.100 Sum_probs=135.6
Q ss_pred CCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCC--CCCCCHH
Q ss_conf 37179999979979998136545053677445105798159759997313058899999999999998536--6563067
Q gi|254780828|r 14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPN--QLLRSSV 91 (190)
Q Consensus 14 ~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~--~~~~~~~ 91 (190)
T Consensus 29 ~G~T~VGik~kdgVVlaa~k~~~s-~l~~~~~~~KI~~I~~~ig~a-~sGl~~D~~~lv~~~r~~a~~~~~~~~~~i~v~ 106 (212)
T cd03751 29 NSGTAIGIRCKDGVVLAVEKLVTS-KLYEPGSNKRIFNVDRHIGIA-VAGLLADGRHLVSRAREEAENYRDNYGTPIPVK 106 (212)
T ss_pred CCCCEEEEEECCEEEEEEECCCCC-CCCCCCCCCEEEEECCCEEEE-EEECCHHHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 269789998289899999625776-563566445489964882799-985757489999999999999999858998899
Q ss_pred HHHHHHHHHHH-------HHHCCCE--EEECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCHHH--
Q ss_conf 99999976112-------2201310--451378764699805863114132799606423457889852078999899--
Q gi|254780828|r 92 ELAKDWRMDKY-------LRNLEAM--ILIADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAEE-- 160 (190)
Q Consensus 92 ~~~~~~~~~~y-------~~~~~~~--~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa~e-- 160 (190)
T Consensus 107 ~la~~ls~~~q~~tq~~~~RPfGvslli~G~D~~gp~Ly~~dPsG~~~~~~a~AiG~~s~~a~~~LEk~y~~~ms~eeai 186 (212)
T cd03751 107 VLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDSDGPQLYMIEPSGVSYGYFGCAIGKGKQAAKTELEKLKFSELTCREAV 186 (212)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCEEEEECCCCCEECCEEEEECCCCHHHHHHHHHHCCCCCCHHHHH
T ss_conf 99999999999861445546673168999971897479999899887460499978997899999987554899999999
Q ss_pred -HHHHHHHHHHCCCEEECCCEEEEEE
Q ss_conf -9999999754011022595699999
Q gi|254780828|r 161 -IARKAMSIAADICVYTNHNIVLETL 185 (190)
Q Consensus 161 -la~~Al~~A~erDvyTgd~i~i~~i 185 (190)
T Consensus 187 ~la~~al~~~~de~~~~~~~~e~~~i 212 (212)
T cd03751 187 KEAAKIIYIVHDEIKDKAFELELSWV 212 (212)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 99999999973104698723899839