HHsearch alignment for GI: 254780828 and conserved domain: cd03758
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.8e-34 Score=232.18 Aligned_cols=172 Identities=17% Similarity=0.188 Sum_probs=147.1
Q ss_pred EEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCC--CCCCHHHH
Q ss_conf 1799999799799981365450536774451057981597599973130588999999999999985366--56306799
Q gi|254780828|r 16 TTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPNQ--LLRSSVEL 93 (190)
Q Consensus 16 TTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~~--~~~~~~~~ 93 (190)
T Consensus 2 ~Tvigi~~kdgVvlAaD~r~s~g~~~~~~~~~KI~~i~~~i~~~-~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (193)
T cd03758 2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMA-CSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAA 80 (193)
T ss_pred CEEEEEEECCEEEEEECCCCCCCCEEECCCCCCEEEECCCEEEE-ECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 57999996999999995886738787548777379956988999-65365899999999999999978875989999999
Q ss_pred HHHHHHHH--HHHHCCC-----EEEECCC-CCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCHH---HHH
Q ss_conf 99997611--2220131-----0451378-76469980586311413279960642345788985207899989---999
Q gi|254780828|r 94 AKDWRMDK--YLRNLEA-----MILIADK-TITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAE---EIA 162 (190)
Q Consensus 94 ~~~~~~~~--y~~~~~~-----~~~~~~~-~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa~---ela 162 (190)
T Consensus 81 a~~i~~~l~~~~~~~~P~~~~~iiaG~D~~~gp~Ly~~D~~G~~~~~~~~a~Gsgs~~~~~~le~~y~~dmt~eea~~l~ 160 (193)
T cd03758 81 ANFTRRELAESLRSRTPYQVNLLLAGYDKVEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYYKPDMTVEEALELM 160 (193)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCEEEEECCCCCEEECCEEEECCCHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 99999999988565898508999999947999589999898773778999976637999999986358988999999999
Q ss_pred HHHHHHHHCCCEEECCCEEEEEEECC
Q ss_conf 99999754011022595699999417
Q gi|254780828|r 163 RKAMSIAADICVYTNHNIVLETLKVG 188 (190)
Q Consensus 163 ~~Al~~A~erDvyTgd~i~i~~i~~~ 188 (190)
T Consensus 161 ~~~i~~~~~Rd~~sg~~~~i~vItkd 186 (193)
T cd03758 161 KKCIKELKKRFIINLPNFTVKVVDKD 186 (193)
T ss_pred HHHHHHHHHHCCCCCCCEEEEEECCC
T ss_conf 99999998637666995699999989