HHsearch alignment for GI: 254780828 and conserved domain: cd03760
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.3e-34 Score=236.33 Aligned_cols=174 Identities=16% Similarity=0.124 Sum_probs=147.2
Q ss_pred CCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHH---HCCCCCCCH
Q ss_conf 37179999979979998136545053677445105798159759997313058899999999999998---536656306
Q gi|254780828|r 14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQ---YPNQLLRSS 90 (190)
Q Consensus 14 ~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~---~~~~~~~~~ 90 (190)
T Consensus 1 tGtTiigi~~kdgVilAaDtr~s~g~~~~~~~~~KI~~I~~~i~~~-~sG~~aD~q~l~~~l~~~~~~~~~~~~~~~~s~ 79 (197)
T cd03760 1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLG-ASGDYADFQYLKRLLDQLVIDDECLDDGHSLSP 79 (197)
T ss_pred CCCEEEEEEECCEEEEEECCCCCCCCEEEECCCCCEEEECCCEEEE-ECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf 9650899996998999985875657557606776579926978999-253589999999999999999999867998789
Q ss_pred HHHHHHHHHHHHHHH--CCC-----EEEECCCC-CCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHC--CCCCHH-
Q ss_conf 799999976112220--131-----04513787-6469980586311413279960642345788985207--899989-
Q gi|254780828|r 91 VELAKDWRMDKYLRN--LEA-----MILIADKT-ITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMS--TQNSAE- 159 (190)
Q Consensus 91 ~~~~~~~~~~~y~~~--~~~-----~~~~~~~~-~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~--~~~sa~- 159 (190)
T Consensus 80 ~~~a~~l~~~ly~~r~~~~P~~v~~liaG~D~~g~p~Ly~iD~~Gs~~~~~~~~~Gsgs~~~~~ild~~yk~~pdms~ee 159 (197)
T cd03760 80 KEIHSYLTRVLYNRRSKMNPLWNTLVVGGVDNEGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAWEKKPDLTEEE 159 (197)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCEEEEEECCCCCEEECCEEEECCCHHHHHHHHHHHCCCCCCCCHHH
T ss_conf 99999999999985436886047889999918998599997688737886989993019999999996466578999999
Q ss_pred --HHHHHHHHHHHCCCEEECCCEEEEEEECC
Q ss_conf --99999999754011022595699999417
Q gi|254780828|r 160 --EIARKAMSIAADICVYTNHNIVLETLKVG 188 (190)
Q Consensus 160 --ela~~Al~~A~erDvyTgd~i~i~~i~~~ 188 (190)
T Consensus 160 a~~l~~k~i~~a~~Rd~~sg~~~~v~vI~kd 190 (197)
T cd03760 160 ARALIEECMKVLYYRDARSINKYQIAVVTKE 190 (197)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEEECCC
T ss_conf 9999999999999856552892799999889