HHsearch alignment for GI: 254780828 and conserved domain: cd03763
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.4e-36 Score=243.40 Aligned_cols=172 Identities=17% Similarity=0.111 Sum_probs=147.5
Q ss_pred EEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCC--CCHHHH
Q ss_conf 179999979979998136545053677445105798159759997313058899999999999998536656--306799
Q gi|254780828|r 16 TTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPNQLL--RSSVEL 93 (190)
Q Consensus 16 TTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~~~~--~~~~~~ 93 (190)
T Consensus 1 TTvigi~~~dgVviAaD~r~s~g~~i~~~~~~Ki~~i~d~~~~~-~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~v~~~ 79 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCC-GAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTA 79 (189)
T ss_pred CCEEEEEECCEEEEEEECCCCCCCEEECCCCCEEEEECCCEEEE-EEECHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 95999996999999992875668887558765489977983899-85147889999999999999977763895759999
Q ss_pred HHHHHHHHHHH--HCCC--EEEECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCHH---HHHHHHH
Q ss_conf 99997611222--0131--045137876469980586311413279960642345788985207899989---9999999
Q gi|254780828|r 94 AKDWRMDKYLR--NLEA--MILIADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAE---EIARKAM 166 (190)
Q Consensus 94 ~~~~~~~~y~~--~~~~--~~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa~---ela~~Al 166 (190)
T Consensus 80 ~~~~~~~l~~y~~~~~~~liiaG~D~~gp~Ly~~D~~Gs~~~~~~~a~GsGs~~a~~~Le~~yk~dmt~eea~~l~~~al 159 (189)
T cd03763 80 LTMLKQHLFRYQGHIGAALVLGGVDYTGPHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRYKPDMTEEEAKKLVCEAI 159 (189)
T ss_pred HHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEECCEEEEEECCEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 99999999975899746999999909998899985887899857188768769999999986689979999999999999
Q ss_pred HHHHCCCEEECCCEEEEEEECC
Q ss_conf 9754011022595699999417
Q gi|254780828|r 167 SIAADICVYTNHNIVLETLKVG 188 (190)
Q Consensus 167 ~~A~erDvyTgd~i~i~~i~~~ 188 (190)
T Consensus 160 ~~a~~rD~~sg~~v~v~vItkd 181 (189)
T cd03763 160 EAGIFNDLGSGSNVDLCVITKD 181 (189)
T ss_pred HHHHHHCCCCCCCEEEEEECCC
T ss_conf 9999756677897899999788