HHsearch alignment for GI: 254780828 and conserved domain: cd03764
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3e-34 Score=233.97 Aligned_cols=172 Identities=21% Similarity=0.133 Sum_probs=152.3
Q ss_pred EEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCC--CCCCCHHHH
Q ss_conf 179999979979998136545053677445105798159759997313058899999999999998536--656306799
Q gi|254780828|r 16 TTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPN--QLLRSSVEL 93 (190)
Q Consensus 16 TTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~--~~~~~~~~~ 93 (190)
T Consensus 1 TT~vgi~~~dgVvlaaD~r~s~~~~i~~~~~~Ki~~i~~~i~~-~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 79 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAM-TIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKAL 79 (188)
T ss_pred CCEEEEEECCEEEEEECCCCCCCCEEECCCCCEEEEECCCEEE-EEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 9499999899999999787665877406865639993595999-953467889999999999999989988899889999
Q ss_pred HHHHHHHHHHHHCCCE-----EEECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCHHH---HHHHH
Q ss_conf 9999761122201310-----451378764699805863114132799606423457889852078999899---99999
Q gi|254780828|r 94 AKDWRMDKYLRNLEAM-----ILIADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAEE---IARKA 165 (190)
Q Consensus 94 ~~~~~~~~y~~~~~~~-----~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa~e---la~~A 165 (190)
T Consensus 80 a~~l~~~l~~~~~~P~~v~~liaG~D~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eea~~l~~~a 159 (188)
T cd03764 80 ATLLSNILNSSKYFPYIVQLLIGGVDEEGPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDEYKEDMTVEEAKKLAIRA 159 (188)
T ss_pred HHHHHHHHHHCCCCCCCEEEEEEEEECCCCEEEEECCCCCEEEEEEEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 99999998751688730489999994899879999898467885069988677999999996644798999999999999
Q ss_pred HHHHHCCCEEECCCEEEEEEECC
Q ss_conf 99754011022595699999417
Q gi|254780828|r 166 MSIAADICVYTNHNIVLETLKVG 188 (190)
Q Consensus 166 l~~A~erDvyTgd~i~i~~i~~~ 188 (190)
T Consensus 160 l~~~~~rd~~sg~~~~i~ivtkd 182 (188)
T cd03764 160 IKSAIERDSASGDGIDVVVITKD 182 (188)
T ss_pred HHHHHHHCCCCCCEEEEEEECCC
T ss_conf 99999846888991899999999