Query gi|254780828|ref|YP_003065241.1| ATP-dependent protease peptidase subunit [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 190
No_of_seqs 110 out of 1354
Neff 8.0
Searched_HMMs 39220
Date Sun May 29 20:32:06 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780828.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03757 proteasome_beta_type_1 100.0 1.1E-37 2.7E-42 255.6 19.7 180 8-188 1-200 (212)
2 cd03761 proteasome_beta_type_5 100.0 1.1E-37 2.8E-42 255.5 19.7 172 16-188 1-182 (188)
3 cd03759 proteasome_beta_type_3 100.0 4.8E-37 1.2E-41 251.5 20.6 175 13-188 1-187 (195)
4 KOG0175 consensus 100.0 6.7E-38 1.7E-42 256.8 14.2 182 6-188 61-253 (285)
5 cd03763 proteasome_beta_type_7 100.0 9.4E-36 2.4E-40 243.4 19.2 172 16-188 1-181 (189)
6 cd03762 proteasome_beta_type_6 100.0 1.5E-35 3.8E-40 242.1 20.1 172 16-188 1-182 (188)
7 cd03760 proteasome_beta_type_4 100.0 1.3E-34 3.2E-39 236.3 20.7 174 14-188 1-190 (197)
8 TIGR03634 arc_protsome_B prote 100.0 1.1E-34 2.9E-39 236.6 20.2 173 15-188 1-183 (185)
9 cd03764 proteasome_beta_archea 100.0 3E-34 7.7E-39 234.0 19.8 172 16-188 1-182 (188)
10 KOG0179 consensus 100.0 8E-35 2E-39 237.6 16.6 183 5-188 19-223 (235)
11 cd03758 proteasome_beta_type_2 100.0 5.8E-34 1.5E-38 232.2 20.5 172 16-188 2-186 (193)
12 COG0638 PRE1 20S proteasome, a 100.0 1.9E-33 4.9E-38 229.0 20.2 179 9-188 24-214 (236)
13 pfam00227 Proteasome Proteasom 100.0 3.3E-32 8.3E-37 221.3 18.7 172 13-185 2-188 (188)
14 cd01912 proteasome_beta protea 100.0 7.8E-32 2E-36 218.9 19.9 172 16-188 1-183 (189)
15 cd01913 protease_HslV Protease 100.0 4.3E-32 1.1E-36 220.5 18.0 170 16-185 1-171 (171)
16 PRK05456 ATP-dependent proteas 100.0 4.4E-32 1.1E-36 220.4 17.9 171 15-185 1-172 (172)
17 KOG0173 consensus 100.0 1.1E-31 2.9E-36 217.9 14.7 175 11-186 33-216 (271)
18 COG5405 HslV ATP-dependent pro 100.0 3.7E-31 9.5E-36 214.6 14.6 176 12-187 1-177 (178)
19 TIGR03633 arc_protsome_A prote 100.0 3.3E-30 8.5E-35 208.7 19.1 173 14-189 28-214 (229)
20 cd03756 proteasome_alpha_arche 100.0 2.6E-30 6.6E-35 209.4 18.0 171 14-187 27-211 (211)
21 cd03752 proteasome_alpha_type_ 100.0 2.6E-29 6.5E-34 203.2 18.5 171 14-185 28-213 (213)
22 cd01906 proteasome_protease_Hs 100.0 6.1E-29 1.6E-33 200.8 18.6 169 16-185 1-182 (182)
23 PRK03996 proteasome subunit al 100.0 4.1E-28 1.1E-32 195.6 18.1 173 14-189 34-220 (245)
24 cd01911 proteasome_alpha prote 100.0 3.7E-28 9.3E-33 195.9 17.7 169 14-185 26-209 (209)
25 PTZ00246 proteasome subunit al 100.0 9.7E-28 2.5E-32 193.3 19.3 175 14-189 30-219 (253)
26 cd03753 proteasome_alpha_type_ 100.0 4.3E-28 1.1E-32 195.5 17.4 169 14-185 26-213 (213)
27 KOG0174 consensus 100.0 1.4E-28 3.6E-33 198.5 13.3 175 12-187 16-200 (224)
28 cd03750 proteasome_alpha_type_ 100.0 1.1E-27 2.9E-32 192.9 18.0 172 14-188 26-211 (227)
29 cd03755 proteasome_alpha_type_ 100.0 1.4E-27 3.7E-32 192.2 18.0 167 14-185 26-207 (207)
30 cd03749 proteasome_alpha_type_ 100.0 2.8E-26 7.2E-31 184.1 18.4 169 14-186 26-211 (211)
31 KOG0180 consensus 99.9 4.2E-26 1.1E-30 183.0 16.9 179 9-188 2-192 (204)
32 cd03751 proteasome_alpha_type_ 99.9 2E-25 5E-30 178.9 18.3 170 14-185 29-212 (212)
33 cd03754 proteasome_alpha_type_ 99.9 4.3E-25 1.1E-29 176.7 17.0 171 12-185 26-215 (215)
34 KOG0185 consensus 99.9 4.6E-22 1.2E-26 157.8 13.8 174 13-187 39-229 (256)
35 KOG0176 consensus 99.8 6.1E-19 1.6E-23 138.3 14.6 173 14-189 33-224 (241)
36 cd01901 Ntn_hydrolase The Ntn 99.8 1.7E-16 4.3E-21 123.0 17.7 150 16-166 1-159 (164)
37 KOG0177 consensus 99.8 2.9E-17 7.5E-22 127.7 13.3 171 16-187 2-185 (200)
38 KOG0178 consensus 99.6 9.9E-15 2.5E-19 111.9 13.8 175 14-189 30-220 (249)
39 KOG0184 consensus 99.6 5E-14 1.3E-18 107.5 13.0 153 14-168 33-196 (254)
40 KOG0183 consensus 99.5 9.7E-14 2.5E-18 105.7 11.5 175 14-190 29-217 (249)
41 KOG0863 consensus 99.5 1.1E-12 2.9E-17 99.1 13.6 172 14-189 31-219 (264)
42 KOG0181 consensus 99.5 5.8E-13 1.5E-17 100.9 9.4 170 14-186 31-214 (233)
43 KOG0182 consensus 99.0 3.2E-08 8.2E-13 71.2 14.9 178 9-189 30-224 (246)
44 cd03765 proteasome_beta_bacter 98.2 4.9E-05 1.2E-09 51.3 12.3 165 16-183 1-205 (236)
45 COG3484 Predicted proteasome-t 96.7 0.015 3.9E-07 35.7 8.3 150 16-167 2-177 (255)
46 COG0279 GmhA Phosphoheptose is 86.8 2.5 6.2E-05 21.9 6.2 36 50-85 38-73 (176)
47 TIGR01369 CPSaseII_lrg carbamo 77.1 1 2.5E-05 24.4 0.9 45 131-183 168-250 (1089)
48 TIGR00441 gmhA phosphoheptose 75.3 3.6 9.1E-05 20.9 3.4 42 50-91 36-78 (186)
49 pfam09894 DUF2121 Uncharacteri 73.4 2.7 6.8E-05 21.7 2.4 20 16-35 2-21 (194)
50 KOG3361 consensus 62.2 12 0.0003 17.6 4.9 40 120-159 70-109 (157)
51 PRK10886 DnaA initiator-associ 57.4 14 0.00037 17.1 4.3 29 52-80 40-68 (196)
52 COG4079 Uncharacterized protei 52.6 11 0.00027 17.9 2.2 20 16-35 2-21 (293)
53 PRK13938 phosphoheptose isomer 49.0 20 0.0005 16.2 5.5 31 50-80 42-72 (196)
54 TIGR00328 flhB flagellar biosy 44.9 13 0.00033 17.4 1.6 42 113-155 265-307 (352)
55 KOG0338 consensus 37.1 30 0.00077 15.1 4.2 35 133-167 223-270 (691)
56 PRK10251 phosphopantetheinyltr 33.8 30 0.00077 15.1 2.1 24 1-24 1-24 (207)
57 TIGR00154 ispE 4-diphosphocyti 30.8 38 0.00097 14.5 4.4 39 137-175 111-152 (322)
58 pfam00947 Pico_P2A Picornaviru 29.0 33 0.00085 14.8 1.7 18 6-23 51-68 (127)
59 TIGR00829 FRU PTS system, Fru 26.9 30 0.00075 15.1 1.1 19 21-39 50-68 (85)
60 PRK00414 gmhA phosphoheptose i 26.1 46 0.0012 13.9 4.4 28 52-79 43-70 (192)
61 PRK04425 Maf-like protein; Rev 26.1 31 0.00079 15.0 1.1 25 20-44 60-84 (196)
62 PRK00234 Maf-like protein; Rev 25.9 34 0.00088 14.7 1.3 26 19-44 56-81 (192)
63 PRK01441 Maf-like protein; Rev 25.9 40 0.001 14.3 1.7 23 22-44 69-91 (207)
64 TIGR02704 carboxysome_B carbox 25.6 43 0.0011 14.2 1.7 35 112-146 27-62 (80)
65 TIGR00511 aIF-2BII_fam transla 25.3 32 0.00083 14.9 1.1 27 130-156 114-141 (303)
66 TIGR01028 S7_S5_E_A ribosomal 24.7 49 0.0012 13.8 3.5 32 141-173 153-185 (206)
67 PRK09225 threonine synthase; V 24.7 49 0.0012 13.8 3.6 28 51-78 180-207 (465)
68 TIGR01349 PDHac_trf_mito pyruv 24.3 34 0.00088 14.7 1.0 27 52-79 370-396 (584)
69 PRK01526 Maf-like protein; Rev 24.2 49 0.0012 13.8 1.8 20 24-43 69-88 (205)
70 PRK03411 consensus 24.0 34 0.00088 14.7 1.0 25 20-44 57-81 (194)
71 PRK03098 consensus 23.8 41 0.0011 14.2 1.4 23 22-44 55-77 (185)
72 PRK02478 Maf-like protein; Rev 23.5 36 0.00091 14.6 1.0 23 22-44 66-88 (199)
73 TIGR01090 apt adenine phosphor 23.1 43 0.0011 14.1 1.4 34 45-81 113-146 (175)
74 PRK02676 consensus 23.1 45 0.0011 14.0 1.4 23 22-44 61-83 (196)
75 COG0424 Maf Nucleotide-binding 22.8 49 0.0013 13.8 1.6 21 24-44 63-83 (193)
76 pfam05971 Methyltransf_10 Prot 22.2 25 0.00064 15.6 -0.0 35 135-169 70-105 (254)
77 PRK00032 Maf-like protein; Rev 22.2 29 0.00074 15.2 0.3 26 19-44 57-82 (189)
78 PRK00238 consensus 22.0 52 0.0013 13.6 1.6 23 22-44 62-84 (198)
79 PRK04719 consensus 21.2 51 0.0013 13.6 1.4 26 19-44 59-84 (188)
80 PRK00078 Maf-like protein; Rev 20.8 56 0.0014 13.4 1.6 22 23-44 62-83 (192)
81 PRK01946 consensus 20.8 59 0.0015 13.3 1.7 23 22-44 68-90 (195)
82 PRK04222 consensus 20.6 26 0.00066 15.5 -0.2 26 19-44 57-82 (191)
83 PRK00148 Maf-like protein; Rev 20.5 50 0.0013 13.7 1.3 22 22-43 59-80 (195)
84 PRK00648 Maf-like protein; Rev 20.2 60 0.0015 13.2 1.7 23 21-43 61-83 (191)
No 1
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.1e-37 Score=255.55 Aligned_cols=180 Identities=19% Similarity=0.205 Sum_probs=157.9
Q ss_pred CCCEEECCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCC--C
Q ss_conf 78177637179999979979998136545053677445105798159759997313058899999999999998536--6
Q gi|254780828|r 8 HYAVKMHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPN--Q 85 (190)
Q Consensus 8 ~~~~~~~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~--~ 85 (190)
|+||+.||||+|||+++||||||||+|+|.|+++.+++.+||++|+++++++ .+|.++|+|.+.+.++.++++++. .
T Consensus 1 ~~py~~nGtTvigi~~~dgVvlAaD~r~s~g~~i~~~~~~Ki~~i~~~~~~~-~sG~~aD~q~l~~~l~~~~~~~~~~~~ 79 (212)
T cd03757 1 FSPYTDNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLG-SSGFQADILALTKRLKARIKMYKYSHN 79 (212)
T ss_pred CCCCCCCCCEEEEEEECCEEEEEEECCCCCCCEEECCCCCCEEEECCCEEEE-ECCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9897788800899996999999990786647776527656379947968999-434578899999999999999999878
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCE-----EEECCCC-CCEEEEECCCCCEECCCEEEEECCHHHHHHHHHH---------
Q ss_conf 563067999999761122201310-----4513787-6469980586311413279960642345788985---------
Q gi|254780828|r 86 LLRSSVELAKDWRMDKYLRNLEAM-----ILIADKT-ITLVITGMGDVLEPENGVMAIGSGGSYALSAARA--------- 150 (190)
Q Consensus 86 ~~~~~~~~~~~~~~~~y~~~~~~~-----~~~~~~~-~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~--------- 150 (190)
...++..+++.++..+|.++++|+ +.+.|.. +|++|..|+.|+..+.+|.|+|||+.+|+|+||+
T Consensus 80 ~~~~~~~~a~~l~~~ly~~R~~P~~v~~lvaG~D~~g~p~ly~~D~~Gs~~~~~~~a~GsGs~~a~~iLd~~~~~k~~~~ 159 (212)
T cd03757 80 KEMSTEAIAQLLSTILYSRRFFPYYVFNILAGIDEEGKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKNQNN 159 (212)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCEEEEEECCCCCEEECCEEEEECCHHHHHHHHHHHHHCCCCCC
T ss_conf 98899999999999998606898502899999848998289998899856745879990489999999865410135444
Q ss_pred HHCCCCCH---HHHHHHHHHHHHCCCEEECCCEEEEEEECC
Q ss_conf 20789998---999999999754011022595699999417
Q gi|254780828|r 151 LMSTQNSA---EEIARKAMSIAADICVYTNHNIVLETLKVG 188 (190)
Q Consensus 151 ~y~~~~sa---~ela~~Al~~A~erDvyTgd~i~i~~i~~~ 188 (190)
.|+++||. .+|+++||..|.+||+.+|+++.|.+|+.+
T Consensus 160 ~~~~dmt~eeA~~l~~~al~~~~~RD~~sg~~~~v~iItkd 200 (212)
T cd03757 160 VERTPLSLEEAVSLVKDAFTSAAERDIYTGDSLEIVIITKD 200 (212)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC
T ss_conf 57799899999999999999999737778991799999789
No 2
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.1e-37 Score=255.51 Aligned_cols=172 Identities=23% Similarity=0.184 Sum_probs=154.8
Q ss_pred EEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCC--CCCCCHHHH
Q ss_conf 179999979979998136545053677445105798159759997313058899999999999998536--656306799
Q gi|254780828|r 16 TTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPN--QLLRSSVEL 93 (190)
Q Consensus 16 TTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~--~~~~~~~~~ 93 (190)
||+|||+++||||||||+|+|.|+++.+|+.+||++|+||++++ ++|.++|.|.+.+.++.++++|+. ....++...
T Consensus 1 TT~igi~~~dGVvlAaD~r~s~g~~i~~~~~~KI~~i~d~~~~~-~sG~~aD~~~l~~~l~~~~~~y~~~~~~~~sv~~~ 79 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGT-MAGGAADCQYWERVLGRECRLYELRNKERISVAAA 79 (188)
T ss_pred CCEEEEEECCEEEEEEECCCCCCCEEECCCCCCEEEECCCEEEE-ECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 92899997998999991775546568737865279936988999-15746879999999999999999986999999999
Q ss_pred HHHHHHHHHHHHCCC-----EEEECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCHH---HHHHHH
Q ss_conf 999976112220131-----045137876469980586311413279960642345788985207899989---999999
Q gi|254780828|r 94 AKDWRMDKYLRNLEA-----MILIADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAE---EIARKA 165 (190)
Q Consensus 94 ~~~~~~~~y~~~~~~-----~~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa~---ela~~A 165 (190)
++.++...|.+++++ .+.+.|.++|++++.|+.|+..+.++.|+|||+.+|+|+||+.|+++|+.+ +|+++|
T Consensus 80 a~~ls~~~y~~r~~~~~v~~iiaG~D~~g~~l~~~D~~G~~~~~~~~a~GsGs~~a~~~ld~~yk~dmt~eea~~l~~~a 159 (188)
T cd03761 80 SKLLSNMLYQYKGMGLSMGTMICGWDKTGPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSGYRYDLSVEEAYDLARRA 159 (188)
T ss_pred HHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEECCCCEEEECCCEECCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 99999999960699962899999973999889999489706775734348857999999996468997999999999999
Q ss_pred HHHHHCCCEEECCCEEEEEEECC
Q ss_conf 99754011022595699999417
Q gi|254780828|r 166 MSIAADICVYTNHNIVLETLKVG 188 (190)
Q Consensus 166 l~~A~erDvyTgd~i~i~~i~~~ 188 (190)
|..|.+||++||+++.+.+|+-+
T Consensus 160 l~~a~~rD~~sG~~i~v~vItkd 182 (188)
T cd03761 160 IYHATHRDAYSGGNVNLYHVRED 182 (188)
T ss_pred HHHHHHHCCCCCCCEEEEEECCC
T ss_conf 99999854546896799999888
No 3
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.8e-37 Score=251.48 Aligned_cols=175 Identities=15% Similarity=0.155 Sum_probs=154.4
Q ss_pred ECCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHC--CCCCCCH
Q ss_conf 63717999997997999813654505367744510579815975999731305889999999999999853--6656306
Q gi|254780828|r 13 MHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYP--NQLLRSS 90 (190)
Q Consensus 13 ~~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~--~~~~~~~ 90 (190)
+||||+|||+++||||||||||+|.|.++.+++.+||++|+|+++++ ++|.++|+|.+.+.++.++++++ ......+
T Consensus 1 ~nGtTvigi~~kdgVvlAaDtr~s~g~~~~~~~~~Ki~~i~~~~~~~-~sG~~aD~~~l~~~l~~~~~l~~~~~~~~~~~ 79 (195)
T cd03759 1 YNGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIG-LAGLATDVQTLAQKLRFRVNLYRLREEREIKP 79 (195)
T ss_pred CCCCEEEEEEECCEEEEEECCCCCCCCEEEECCCCEEEECCCCEEEE-EEECHHHHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 99736999996999999983875558788827767189937988999-06848999999999999999888976998779
Q ss_pred HHHHHHHHHHHHHHHCCCEE-----EECCCC-CCEEEEECCCCCEE-CCCEEEEECCHHHHHHHHHHHHCCCCCHH---H
Q ss_conf 79999997611222013104-----513787-64699805863114-13279960642345788985207899989---9
Q gi|254780828|r 91 VELAKDWRMDKYLRNLEAMI-----LIADKT-ITLVITGMGDVLEP-ENGVMAIGSGGSYALSAARALMSTQNSAE---E 160 (190)
Q Consensus 91 ~~~~~~~~~~~y~~~~~~~~-----~~~~~~-~~~~~~~d~~g~~~-~~~~~a~GSGs~~A~g~Le~~y~~~~sa~---e 160 (190)
...++.+++..|.++++|+. .+.|.. +|++++.|+.|+.. ..+|.++|||+.+|+|+||..|+|+|+.+ +
T Consensus 80 ~~~a~~ls~~ly~~R~~P~~~~~lvaG~D~~g~p~l~~~D~~G~~~~~~~~~~~Gsg~~~~~~ild~~~~~~m~~eea~~ 159 (195)
T cd03759 80 KTFSSLISSLLYEKRFGPYFVEPVVAGLDPDGKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMCESLWRPDMEPDELFE 159 (195)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCEEEEECCCCCEEEECCEEEECCCHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 99999999999986699946999998883799819999948998688678699867689999999854568989999999
Q ss_pred HHHHHHHHHHCCCEEECCCEEEEEEECC
Q ss_conf 9999999754011022595699999417
Q gi|254780828|r 161 IARKAMSIAADICVYTNHNIVLETLKVG 188 (190)
Q Consensus 161 la~~Al~~A~erDvyTgd~i~i~~i~~~ 188 (190)
|+++||..|.+||++||+++.|.+|+.+
T Consensus 160 l~~~ai~~a~~RD~~sg~~~~i~iItkd 187 (195)
T cd03759 160 TISQALLSAVDRDALSGWGAVVYIITKD 187 (195)
T ss_pred HHHHHHHHHHHHCCCCCCCEEEEEEECC
T ss_conf 9999999999756565993799999079
No 4
>KOG0175 consensus
Probab=100.00 E-value=6.7e-38 Score=256.84 Aligned_cols=182 Identities=22% Similarity=0.181 Sum_probs=163.2
Q ss_pred CCCCCEEE-CCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 77781776-37179999979979998136545053677445105798159759997313058899999999999998536
Q gi|254780828|r 6 DKHYAVKM-HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPN 84 (190)
Q Consensus 6 ~~~~~~~~-~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~ 84 (190)
++..-|+| ||||++|++|++||++|+|||+|.|++|.+..++||..|+++ .+++++|.++|||+|.|.+..+|++++.
T Consensus 61 ~~~~~i~~~hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn~y-lLGTmAGgAADCqfWer~L~kecRL~eL 139 (285)
T KOG0175 61 TAGVLIKFAHGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEINPY-LLGTMAGGAADCQFWERVLAKECRLHEL 139 (285)
T ss_pred CCCCEEEECCCCEEEEEEECCCEEEEEECCCCCCCEEEEHHHCEEEEECHH-HHHCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 766045524781589999528679998455556660210201015640614-3100247514568999999988778987
Q ss_pred CC--CCCHHHHHHHHHHHHHHHHCC-----CEEEECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCC
Q ss_conf 65--630679999997611222013-----10451378764699805863114132799606423457889852078999
Q gi|254780828|r 85 QL--LRSSVELAKDWRMDKYLRNLE-----AMILIADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNS 157 (190)
Q Consensus 85 ~~--~~~~~~~~~~~~~~~y~~~~~-----~~~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~s 157 (190)
++ .++++..++.+++..|+++-. .++.+.|..+|.+|++|..|.....+.+++||||.||+|+||+.|++||+
T Consensus 140 RnkeriSVsaASKllsN~~y~YkGmGLsmGtMi~G~Dk~GP~lyYVDseG~Rl~G~~FSVGSGs~yAYGVLDsgYr~dls 219 (285)
T KOG0175 140 RNKERISVSAASKLLSNMVYQYKGMGLSMGTMIAGWDKKGPGLYYVDSEGTRLSGDLFSVGSGSTYAYGVLDSGYRYDLS 219 (285)
T ss_pred HCCCCEEHHHHHHHHHHHHHHCCCCCHHHEEEEEECCCCCCCEEEECCCCCCCCCCEEEECCCCCEEEEEECCCCCCCCC
T ss_conf 52760126889999998776504766102015762068898169985889870476675068984468751268788889
Q ss_pred HH---HHHHHHHHHHHCCCEEECCCEEEEEEECC
Q ss_conf 89---99999999754011022595699999417
Q gi|254780828|r 158 AE---EIARKAMSIAADICVYTNHNIVLETLKVG 188 (190)
Q Consensus 158 a~---ela~~Al~~A~erDvyTgd~i~i~~i~~~ 188 (190)
.+ +|+++||.+|+.||.|+|..|++.-|+.+
T Consensus 220 ~eEA~~L~rrAI~hAThRDaySGG~vnlyHv~ed 253 (285)
T KOG0175 220 DEEAYDLARRAIYHATHRDAYSGGVVNLYHVKED 253 (285)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCC
T ss_conf 8999999998988887303456735789998676
No 5
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.4e-36 Score=243.40 Aligned_cols=172 Identities=17% Similarity=0.111 Sum_probs=147.5
Q ss_pred EEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCC--CCHHHH
Q ss_conf 179999979979998136545053677445105798159759997313058899999999999998536656--306799
Q gi|254780828|r 16 TTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPNQLL--RSSVEL 93 (190)
Q Consensus 16 TTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~~~~--~~~~~~ 93 (190)
||+|||+++||||||+|+|+|.|+++.+++.+||++|+||++++ .+|.++|.|.+.+.++.++++++.... .++...
T Consensus 1 TTvigi~~~dgVviAaD~r~s~g~~i~~~~~~Ki~~i~d~~~~~-~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~v~~~ 79 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCC-GAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTA 79 (189)
T ss_pred CCEEEEEECCEEEEEEECCCCCCCEEECCCCCEEEEECCCEEEE-EEECHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 95999996999999992875668887558765489977983899-85147889999999999999977763895759999
Q ss_pred HHHHHHHHHHH--HCCC--EEEECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCHH---HHHHHHH
Q ss_conf 99997611222--0131--045137876469980586311413279960642345788985207899989---9999999
Q gi|254780828|r 94 AKDWRMDKYLR--NLEA--MILIADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAE---EIARKAM 166 (190)
Q Consensus 94 ~~~~~~~~y~~--~~~~--~~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa~---ela~~Al 166 (190)
++.++..+|.+ .+.+ .+.+.|.++|++|..|+.|+..+.+|.|+|||+.+|+|+||+.|+|+|+.+ +|+++||
T Consensus 80 ~~~~~~~l~~y~~~~~~~liiaG~D~~gp~Ly~~D~~Gs~~~~~~~a~GsGs~~a~~~Le~~yk~dmt~eea~~l~~~al 159 (189)
T cd03763 80 LTMLKQHLFRYQGHIGAALVLGGVDYTGPHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRYKPDMTEEEAKKLVCEAI 159 (189)
T ss_pred HHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEECCEEEEEECCEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 99999999975899746999999909998899985887899857188768769999999986689979999999999999
Q ss_pred HHHHCCCEEECCCEEEEEEECC
Q ss_conf 9754011022595699999417
Q gi|254780828|r 167 SIAADICVYTNHNIVLETLKVG 188 (190)
Q Consensus 167 ~~A~erDvyTgd~i~i~~i~~~ 188 (190)
+.|.+||+.||+++.|.+|+.+
T Consensus 160 ~~a~~rD~~sg~~v~v~vItkd 181 (189)
T cd03763 160 EAGIFNDLGSGSNVDLCVITKD 181 (189)
T ss_pred HHHHHHCCCCCCCEEEEEECCC
T ss_conf 9999756677897899999788
No 6
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.5e-35 Score=242.14 Aligned_cols=172 Identities=20% Similarity=0.109 Sum_probs=149.5
Q ss_pred EEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHC--CCCCCCHHHH
Q ss_conf 17999997997999813654505367744510579815975999731305889999999999999853--6656306799
Q gi|254780828|r 16 TTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYP--NQLLRSSVEL 93 (190)
Q Consensus 16 TTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~--~~~~~~~~~~ 93 (190)
||+|||+++||||||+|+|+|+|+++.+++++||++|++|++++ ++|.++|.|.+.+.++.++++++ .....++...
T Consensus 1 TTvvgi~~~~GVilAaD~r~s~g~~~~~~~~~KI~~i~~~~~~~-~sG~~aD~~~l~~~l~~~~~~y~~~~~~~~~~~~~ 79 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCC-RSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTA 79 (188)
T ss_pred CCEEEEEECCEEEEEECCCCCCCCEEECCCCCCEEEECCCEEEE-ECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 91999997997999983742447864337657479964857999-60657889999999999999999986899899999
Q ss_pred HHHHHHHHHHHHCCC----EEEECCC-CCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCHH---HHHHHH
Q ss_conf 999976112220131----0451378-76469980586311413279960642345788985207899989---999999
Q gi|254780828|r 94 AKDWRMDKYLRNLEA----MILIADK-TITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAE---EIARKA 165 (190)
Q Consensus 94 ~~~~~~~~y~~~~~~----~~~~~~~-~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa~---ela~~A 165 (190)
++.++..+|.++... .+.+.|. ++|.+|+.|+.|+..+.+|.|+|||+.+|+|+||+.|||+||.+ +|+++|
T Consensus 80 a~~ls~~ly~~r~~~~~~~ivaG~D~~~~~~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~~k~~ms~eeA~~L~~~a 159 (188)
T cd03762 80 ASLFKNLCYNYKEMLSAGIIVAGWDEQNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDANYKPGMTLEECIKFVKNA 159 (188)
T ss_pred HHHHHHHHHCCCCCCCEEEEEEECCCCCCCEEEEECCCCCEEECCEEEEECCHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 99999997526887526789971148899689999799966870589992789999999996367998999999999999
Q ss_pred HHHHHCCCEEECCCEEEEEEECC
Q ss_conf 99754011022595699999417
Q gi|254780828|r 166 MSIAADICVYTNHNIVLETLKVG 188 (190)
Q Consensus 166 l~~A~erDvyTgd~i~i~~i~~~ 188 (190)
|+.|.+||++||+++.+.+|+-+
T Consensus 160 l~~a~~rD~~sg~~i~i~~Itkd 182 (188)
T cd03762 160 LSLAMSRDGSSGGVIRLVIITKD 182 (188)
T ss_pred HHHHHHHCCCCCCCEEEEEECCC
T ss_conf 99999847567896799999688
No 7
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.3e-34 Score=236.33 Aligned_cols=174 Identities=16% Similarity=0.124 Sum_probs=147.2
Q ss_pred CCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHH---HCCCCCCCH
Q ss_conf 37179999979979998136545053677445105798159759997313058899999999999998---536656306
Q gi|254780828|r 14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQ---YPNQLLRSS 90 (190)
Q Consensus 14 ~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~---~~~~~~~~~ 90 (190)
.|||+|||+++|||+||||+|+|+|+++.+++.+||++|+++++++ ++|.++|.|.+.+.++.+..+ +......++
T Consensus 1 tGtTiigi~~kdgVilAaDtr~s~g~~~~~~~~~KI~~I~~~i~~~-~sG~~aD~q~l~~~l~~~~~~~~~~~~~~~~s~ 79 (197)
T cd03760 1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLG-ASGDYADFQYLKRLLDQLVIDDECLDDGHSLSP 79 (197)
T ss_pred CCCEEEEEEECCEEEEEECCCCCCCCEEEECCCCCEEEECCCEEEE-ECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf 9650899996998999985875657557606776579926978999-253589999999999999999999867998789
Q ss_pred HHHHHHHHHHHHHHH--CCC-----EEEECCCC-CCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHC--CCCCHH-
Q ss_conf 799999976112220--131-----04513787-6469980586311413279960642345788985207--899989-
Q gi|254780828|r 91 VELAKDWRMDKYLRN--LEA-----MILIADKT-ITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMS--TQNSAE- 159 (190)
Q Consensus 91 ~~~~~~~~~~~y~~~--~~~-----~~~~~~~~-~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~--~~~sa~- 159 (190)
...++.++...|.++ +.| .+.+.|.. +|++++.|+.|+..+.+|.+.|||+.+++|+||+.|| |+|+.+
T Consensus 80 ~~~a~~l~~~ly~~r~~~~P~~v~~liaG~D~~g~p~Ly~iD~~Gs~~~~~~~~~Gsgs~~~~~ild~~yk~~pdms~ee 159 (197)
T cd03760 80 KEIHSYLTRVLYNRRSKMNPLWNTLVVGGVDNEGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAWEKKPDLTEEE 159 (197)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCEEEEEECCCCCEEECCEEEECCCHHHHHHHHHHHCCCCCCCCHHH
T ss_conf 99999999999985436886047889999918998599997688737886989993019999999996466578999999
Q ss_pred --HHHHHHHHHHHCCCEEECCCEEEEEEECC
Q ss_conf --99999999754011022595699999417
Q gi|254780828|r 160 --EIARKAMSIAADICVYTNHNIVLETLKVG 188 (190)
Q Consensus 160 --ela~~Al~~A~erDvyTgd~i~i~~i~~~ 188 (190)
+|+++|+..|.+||+++|+++.|.+|+-+
T Consensus 160 a~~l~~k~i~~a~~Rd~~sg~~~~v~vI~kd 190 (197)
T cd03760 160 ARALIEECMKVLYYRDARSINKYQIAVVTKE 190 (197)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEEECCC
T ss_conf 9999999999999856552892799999889
No 8
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=1.1e-34 Score=236.65 Aligned_cols=173 Identities=23% Similarity=0.159 Sum_probs=153.9
Q ss_pred CEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHC--CCCCCCHHH
Q ss_conf 717999997997999813654505367744510579815975999731305889999999999999853--665630679
Q gi|254780828|r 15 ATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYP--NQLLRSSVE 92 (190)
Q Consensus 15 GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~--~~~~~~~~~ 92 (190)
|||+|||+++||||||+|+|+|+|+++.+++++||++|++|++++ ++|..+|++.+.+.++.++++++ .....++..
T Consensus 1 GtT~vgi~~~dgVvlaaD~r~s~~~~i~~~~~~Ki~~i~~~i~~~-~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~ 79 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADRRASMGNFVASKNAKKVFQIDDYIAIT-IAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKA 79 (185)
T ss_pred CCCEEEEEECCEEEEEECCCCCCCCEEECCCCCEEEEECCCEEEE-EEECHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 965999998999999998886668775258656499937978999-6456899999999999999986997399988999
Q ss_pred HHHHHHHHHHHHHCCCE-----EEECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCHHH---HHHH
Q ss_conf 99999761122201310-----451378764699805863114132799606423457889852078999899---9999
Q gi|254780828|r 93 LAKDWRMDKYLRNLEAM-----ILIADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAEE---IARK 164 (190)
Q Consensus 93 ~~~~~~~~~y~~~~~~~-----~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa~e---la~~ 164 (190)
+++.+....|..++.|+ +.+.|.++|++|..|+.|+..+.+|.|+|||+.+|+++||+.|+++||.+| ++++
T Consensus 80 ~a~~l~~~~~~~~~~P~~v~~l~~G~D~~gp~Ly~~D~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~mt~eea~~l~~~ 159 (185)
T TIGR03634 80 LATLLSNILNSNRFFPYIVQLLVGGVDEDGPHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDEYREDMSLEEAKKLAVR 159 (185)
T ss_pred HHHHHHHHHHHCCCCCCEEEEEEEEEECCCCEEEEECCCEEEEECCEEEEECCHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 99999999873177750017999999489988999989887998786886135799999998454799999999999999
Q ss_pred HHHHHHCCCEEECCCEEEEEEECC
Q ss_conf 999754011022595699999417
Q gi|254780828|r 165 AMSIAADICVYTNHNIVLETLKVG 188 (190)
Q Consensus 165 Al~~A~erDvyTgd~i~i~~i~~~ 188 (190)
||..|.+||+++|+++++.+|+-+
T Consensus 160 ~l~~~~~rd~~sg~~~~v~iv~kd 183 (185)
T TIGR03634 160 AIKSAIERDVASGDGIDVAVITKD 183 (185)
T ss_pred HHHHHHHHCCCCCCEEEEEEECCC
T ss_conf 999999846888992899998898
No 9
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3e-34 Score=233.97 Aligned_cols=172 Identities=21% Similarity=0.133 Sum_probs=152.3
Q ss_pred EEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCC--CCCCCHHHH
Q ss_conf 179999979979998136545053677445105798159759997313058899999999999998536--656306799
Q gi|254780828|r 16 TTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPN--QLLRSSVEL 93 (190)
Q Consensus 16 TTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~--~~~~~~~~~ 93 (190)
||+|||+++||||||+|+|+|+|.++.+++.+|||+|++|+++ +++|.++|++.+.+.++.++++++. ..+.++..+
T Consensus 1 TT~vgi~~~dgVvlaaD~r~s~~~~i~~~~~~Ki~~i~~~i~~-~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 79 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAM-TIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKAL 79 (188)
T ss_pred CCEEEEEECCEEEEEECCCCCCCCEEECCCCCEEEEECCCEEE-EEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 9499999899999999787665877406865639993595999-953467889999999999999989988899889999
Q ss_pred HHHHHHHHHHHHCCCE-----EEECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCHHH---HHHHH
Q ss_conf 9999761122201310-----451378764699805863114132799606423457889852078999899---99999
Q gi|254780828|r 94 AKDWRMDKYLRNLEAM-----ILIADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAEE---IARKA 165 (190)
Q Consensus 94 ~~~~~~~~y~~~~~~~-----~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa~e---la~~A 165 (190)
++.+....|.+++.|+ +.+.|.++|++|..|+.|+..+.++.|+|||+.+|+++||+.|+|+|+.+| |+++|
T Consensus 80 a~~l~~~l~~~~~~P~~v~~liaG~D~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eea~~l~~~a 159 (188)
T cd03764 80 ATLLSNILNSSKYFPYIVQLLIGGVDEEGPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDEYKEDMTVEEAKKLAIRA 159 (188)
T ss_pred HHHHHHHHHHCCCCCCCEEEEEEEEECCCCEEEEECCCCCEEEEEEEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 99999998751688730489999994899879999898467885069988677999999996644798999999999999
Q ss_pred HHHHHCCCEEECCCEEEEEEECC
Q ss_conf 99754011022595699999417
Q gi|254780828|r 166 MSIAADICVYTNHNIVLETLKVG 188 (190)
Q Consensus 166 l~~A~erDvyTgd~i~i~~i~~~ 188 (190)
|+.|.+||++||+++.|.+|+.+
T Consensus 160 l~~~~~rd~~sg~~~~i~ivtkd 182 (188)
T cd03764 160 IKSAIERDSASGDGIDVVVITKD 182 (188)
T ss_pred HHHHHHHCCCCCCEEEEEEECCC
T ss_conf 99999846888991899999999
No 10
>KOG0179 consensus
Probab=100.00 E-value=8e-35 Score=237.57 Aligned_cols=183 Identities=18% Similarity=0.188 Sum_probs=163.4
Q ss_pred CCCCCCEEECCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 67778177637179999979979998136545053677445105798159759997313058899999999999998536
Q gi|254780828|r 5 GDKHYAVKMHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPN 84 (190)
Q Consensus 5 ~~~~~~~~~~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~ 84 (190)
-.+|+||++||+|||||++.|++|+|+|||.|.|+.|.+|..+|||+++|++++. .+|+.+|+..+.+.++.+++.|++
T Consensus 19 ~~~f~PY~~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~-~sGF~aD~l~L~k~i~~r~~~Y~~ 97 (235)
T KOG0179 19 HERFSPYEDNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLG-SSGFYADTLALVKVIKSRIKQYEH 97 (235)
T ss_pred CCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCCEEEECCCCCHHEECCCCEEEE-CCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 1147964258964999817965999536522365013225440320216856985-265104279999999999988710
Q ss_pred CC--CCCHHHHHHHHHHHHHHHHCCCEEE-----ECCC-CCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHC---
Q ss_conf 65--6306799999976112220131045-----1378-76469980586311413279960642345788985207---
Q gi|254780828|r 85 QL--LRSSVELAKDWRMDKYLRNLEAMIL-----IADK-TITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMS--- 153 (190)
Q Consensus 85 ~~--~~~~~~~~~~~~~~~y~~~~~~~~~-----~~~~-~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~--- 153 (190)
.. .+++...+++++..+|.+||||+.. +.|. +++.+|+.||.|+++...|-|.||++.+++|+||....
T Consensus 98 ~h~k~ms~~s~A~lls~~LY~kRFFPYYv~~ilaGiDeeGKG~VySyDPvGsyer~~~~AgGsa~~mI~PfLDnQi~~kn 177 (235)
T KOG0179 98 DHNKKMSIHSAAQLLSTILYSKRFFPYYVFNILAGIDEEGKGAVYSYDPVGSYERVTCRAGGSAASMIQPFLDNQIGHKN 177 (235)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCC
T ss_conf 54311568999999998876424430200102344354686358863687630354145277514432033441226767
Q ss_pred --------CCCCHH---HHHHHHHHHHHCCCEEECCCEEEEEEECC
Q ss_conf --------899989---99999999754011022595699999417
Q gi|254780828|r 154 --------TQNSAE---EIARKAMSIAADICVYTNHNIVLETLKVG 188 (190)
Q Consensus 154 --------~~~sa~---ela~~Al~~A~erDvyTgd~i~i~~i~~~ 188 (190)
+.++.+ .|+++++.+|+||||||||++.|.+++-+
T Consensus 178 ~~~e~~~~~~Ls~e~ai~lv~d~F~SAaERdI~tGD~l~i~I~tk~ 223 (235)
T KOG0179 178 QNLENAERTPLSLERAIRLVKDAFTSAAERDIYTGDKLEICIITKD 223 (235)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECC
T ss_conf 2202576665579999999999741033400203882799999417
No 11
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.8e-34 Score=232.18 Aligned_cols=172 Identities=17% Similarity=0.188 Sum_probs=147.1
Q ss_pred EEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCC--CCCCHHHH
Q ss_conf 1799999799799981365450536774451057981597599973130588999999999999985366--56306799
Q gi|254780828|r 16 TTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPNQ--LLRSSVEL 93 (190)
Q Consensus 16 TTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~~--~~~~~~~~ 93 (190)
+|+|||+++||||||||+|+|.|+++.+++++||++|++|++++ ++|.++|.|.+.+.++.++++++.. ...++...
T Consensus 2 ~Tvigi~~kdgVvlAaD~r~s~g~~~~~~~~~KI~~i~~~i~~~-~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (193)
T cd03758 2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMA-CSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAA 80 (193)
T ss_pred CEEEEEEECCEEEEEECCCCCCCCEEECCCCCCEEEECCCEEEE-ECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 57999996999999995886738787548777379956988999-65365899999999999999978875989999999
Q ss_pred HHHHHHHH--HHHHCCC-----EEEECCC-CCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCHH---HHH
Q ss_conf 99997611--2220131-----0451378-76469980586311413279960642345788985207899989---999
Q gi|254780828|r 94 AKDWRMDK--YLRNLEA-----MILIADK-TITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAE---EIA 162 (190)
Q Consensus 94 ~~~~~~~~--y~~~~~~-----~~~~~~~-~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa~---ela 162 (190)
++..+... |.+++.| .+.+.|. ++|++|..|+.|+..+.+|.|+|||+.+|+|+||+.|+|+||.+ +|+
T Consensus 81 a~~i~~~l~~~~~~~~P~~~~~iiaG~D~~~gp~Ly~~D~~G~~~~~~~~a~Gsgs~~~~~~le~~y~~dmt~eea~~l~ 160 (193)
T cd03758 81 ANFTRRELAESLRSRTPYQVNLLLAGYDKVEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYYKPDMTVEEALELM 160 (193)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCEEEEECCCCCEEECCEEEECCCHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 99999999988565898508999999947999589999898773778999976637999999986358988999999999
Q ss_pred HHHHHHHHCCCEEECCCEEEEEEECC
Q ss_conf 99999754011022595699999417
Q gi|254780828|r 163 RKAMSIAADICVYTNHNIVLETLKVG 188 (190)
Q Consensus 163 ~~Al~~A~erDvyTgd~i~i~~i~~~ 188 (190)
++||+.|.+||+++|+++++.+|+-+
T Consensus 161 ~~~i~~~~~Rd~~sg~~~~i~vItkd 186 (193)
T cd03758 161 KKCIKELKKRFIINLPNFTVKVVDKD 186 (193)
T ss_pred HHHHHHHHHHCCCCCCCEEEEEECCC
T ss_conf 99999998637666995699999989
No 12
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-33 Score=228.95 Aligned_cols=179 Identities=22% Similarity=0.145 Sum_probs=155.0
Q ss_pred CCEEECCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHC--CCC
Q ss_conf 817763717999997997999813654505367744510579815975999731305889999999999999853--665
Q gi|254780828|r 9 YAVKMHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYP--NQL 86 (190)
Q Consensus 9 ~~~~~~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~--~~~ 86 (190)
++.+.+|||+|||+++||||||+|+|+|+|.++.+++++|||+|+||++++ ++|.++|++.+.+.++.++++++ ...
T Consensus 24 ~a~~~~gtT~vgik~kdgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~-~sG~~aDa~~lv~~~r~~a~~~~~~~~~ 102 (236)
T COG0638 24 EAVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMA-IAGLAADAQVLVRYARAEAQLYRLRYGE 102 (236)
T ss_pred HHHHCCCCEEEEEEECCEEEEEEECCCCCCCEECCCCCCEEEEECCCEEEE-ECCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 666517955999994999999993577777731056763499977988999-4527688999999999999987997199
Q ss_pred CCCHHHHHHHHHHHHHHHHC--CCE-----EEECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCHH
Q ss_conf 63067999999761122201--310-----45137876469980586311413279960642345788985207899989
Q gi|254780828|r 87 LRSSVELAKDWRMDKYLRNL--EAM-----ILIADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAE 159 (190)
Q Consensus 87 ~~~~~~~~~~~~~~~y~~~~--~~~-----~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa~ 159 (190)
.+++..+++.++..+|.+++ .|+ +.+.|.++|.+|..||+|+..+.++.|+|||+++|++.||+.|+++|+.+
T Consensus 103 ~i~v~~la~~ls~~l~~~~~~~rP~gv~~iiaG~d~~~p~Ly~~Dp~G~~~~~~~~a~Gsgs~~a~~~Le~~y~~~m~~e 182 (236)
T COG0638 103 PISVEALAKLLSNILQEYTQSGRPYGVSLLVAGVDDGGPRLYSTDPSGSYNEYKATAIGSGSQFAYGFLEKEYREDLSLE 182 (236)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCEEEEECCCCCEEECCEEEECCCHHHHHHHHHHHCCCCCCHH
T ss_conf 89999999999999998432667760799999971898679998899856617979985775899999997344699989
Q ss_pred H---HHHHHHHHHHCCCEEECCCEEEEEEECC
Q ss_conf 9---9999999754011022595699999417
Q gi|254780828|r 160 E---IARKAMSIAADICVYTNHNIVLETLKVG 188 (190)
Q Consensus 160 e---la~~Al~~A~erDvyTgd~i~i~~i~~~ 188 (190)
| ++.+||..|.+||..+|+++++.+|+.+
T Consensus 183 eai~la~~al~~a~~rd~~s~~~~~v~vi~~~ 214 (236)
T COG0638 183 EAIELAVKALRAAIERDAASGGGIEVAVITKD 214 (236)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCEEEEEECC
T ss_conf 99999999999998434556898189999858
No 13
>pfam00227 Proteasome Proteasome subunit. The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria. The second is call beta-proteobacteria proteasome homologue (BPH).
Probab=100.00 E-value=3.3e-32 Score=221.25 Aligned_cols=172 Identities=24% Similarity=0.225 Sum_probs=140.5
Q ss_pred ECCEEEEEEEECCEEEEEECCCCCCCCEEEECC-CEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCC--C
Q ss_conf 637179999979979998136545053677445-1057981597599973130588999999999999985366563--0
Q gi|254780828|r 13 MHATTILTVRKDGVVVIAGDGQVSLGQTVMKAN-ARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPNQLLR--S 89 (190)
Q Consensus 13 ~~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~-~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~~~~~--~ 89 (190)
.+|||+|||+++||||||||+|+|.|+.+.+++ ++|||+|+++++++ ++|.++|.|.+.+.++.++++++..... +
T Consensus 2 ~~GtTivgi~~~dgVvlaaD~r~s~g~~~~~~~~~~KI~~i~~~i~~~-~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 80 (188)
T pfam00227 2 KTGTTIVGIKGKDGVVLAADKRATRGSKLLSKDTVEKIFKIDDHIGMA-FAGLAADARTLVDYARAEAQLYRLRYGRPIS 80 (188)
T ss_pred CCCCEEEEEEECCEEEEEECCCCCCCCEEECCCCCCEEEEECCCEEEE-ECCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 987479999989999999888767688876578745299967976999-7267578999999999999986897699999
Q ss_pred HH---HHHHHHHHHHH---HHHCCCEE--EECC-CCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCH--
Q ss_conf 67---99999976112---22013104--5137-87646998058631141327996064234578898520789998--
Q gi|254780828|r 90 SV---ELAKDWRMDKY---LRNLEAMI--LIAD-KTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSA-- 158 (190)
Q Consensus 90 ~~---~~~~~~~~~~y---~~~~~~~~--~~~~-~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa-- 158 (190)
+. ..+...+...+ .+++...+ .+.| .++|++|..|+.|+..+.+|.|+|||+.+|+++||+.|+++|+.
T Consensus 81 ~~~~~~~a~~~~~~~~~~~~~p~~~~~ii~G~d~~~~p~Ly~vD~~G~~~~~~~~a~G~g~~~a~~~le~~~~~~mt~ee 160 (188)
T pfam00227 81 VELAKRIADKLQAYTQYSGRRPYGVSLLIAGYDEDGGPHLYSIDPSGSVIEYKATAIGSGSQYAYGFLEKLYKPDMTLEE 160 (188)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCEEEEECCCEEEEECCEEEECCCHHHHHHHHHHHCCCCCCHHH
T ss_conf 99999999999998886267885157999887068994699985877999868488636479999999975568979999
Q ss_pred -HHHHHHHHHHHHCCCEEECCCEEEEEE
Q ss_conf -999999999754011022595699999
Q gi|254780828|r 159 -EEIARKAMSIAADICVYTNHNIVLETL 185 (190)
Q Consensus 159 -~ela~~Al~~A~erDvyTgd~i~i~~i 185 (190)
.+++++||..|.+||.++|+++++.+|
T Consensus 161 a~~l~~~al~~~~~rD~~sg~~v~v~vi 188 (188)
T pfam00227 161 AVELAVKALKEAIDRDALSGGNIEVAVI 188 (188)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEEC
T ss_conf 9999999999998653778983899979
No 14
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.8e-32 Score=218.87 Aligned_cols=172 Identities=23% Similarity=0.171 Sum_probs=150.7
Q ss_pred EEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHC--CCCCCCHHHH
Q ss_conf 17999997997999813654505367744510579815975999731305889999999999999853--6656306799
Q gi|254780828|r 16 TTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYP--NQLLRSSVEL 93 (190)
Q Consensus 16 TTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~--~~~~~~~~~~ 93 (190)
||+|||+++||||||+|||+|.|.++.+++++||++++++++++ .+|.++|.+.+.+.++.+++.++ .....++..+
T Consensus 1 tTvvai~~~dgVvlaaD~r~t~g~~~~~~~~~Ki~~i~~~~~~~-~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 79 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLG-TAGSAADTQALTRLLKRNLRLYELRNGRELSVKAA 79 (189)
T ss_pred CCEEEEEECCEEEEEECCCCCCCCEEECCCCCEEEEECCCEEEE-ECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 93999997999999984875678600057643499975838998-34665889999999999999989973998758999
Q ss_pred HHHHHHHHHHHHCCCE-----EEECCC-CCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCC---HHHHHHH
Q ss_conf 9999761122201310-----451378-764699805863114132799606423457889852078999---8999999
Q gi|254780828|r 94 AKDWRMDKYLRNLEAM-----ILIADK-TITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNS---AEEIARK 164 (190)
Q Consensus 94 ~~~~~~~~y~~~~~~~-----~~~~~~-~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~s---a~ela~~ 164 (190)
++.++...|.+++.|+ +.+.|. ++|++|..|+.|+..+.+|.|+|||+.+|+++||+.|+|+|| |.+++++
T Consensus 80 a~~l~~~l~~~~~~p~~v~~iv~G~D~~~~p~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~eea~~l~~~ 159 (189)
T cd01912 80 ANLLSNILYSYRGFPYYVSLIVGGVDKGGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRGYKPDMTLEEAVELVKK 159 (189)
T ss_pred HHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEEEECCCEEEEEEEEEECCCCHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 99999999974799962688999985999828999967818999988998168077899999665699699999999999
Q ss_pred HHHHHHCCCEEECCCEEEEEEECC
Q ss_conf 999754011022595699999417
Q gi|254780828|r 165 AMSIAADICVYTNHNIVLETLKVG 188 (190)
Q Consensus 165 Al~~A~erDvyTgd~i~i~~i~~~ 188 (190)
||..|.+||+.+|+++++.+|+.+
T Consensus 160 ~l~~~~~rd~~sg~~~~v~vi~~d 183 (189)
T cd01912 160 AIDSAIERDLSSGGGVDVAVITKD 183 (189)
T ss_pred HHHHHHHHCCCCCCCEEEEEECCC
T ss_conf 999999846777995799999388
No 15
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=100.00 E-value=4.3e-32 Score=220.50 Aligned_cols=170 Identities=73% Similarity=1.118 Sum_probs=165.8
Q ss_pred EEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 17999997997999813654505367744510579815975999731305889999999999999853665630679999
Q gi|254780828|r 16 TTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPNQLLRSSVELAK 95 (190)
Q Consensus 16 TTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (190)
|||++|+.++.|+||+|.|+|.|+.|...+.+||+++.+..+++||+|..+|...+.+.++.+++++..+..++...+++
T Consensus 1 TTIl~Vr~~g~vaiagDGQvT~G~~v~K~~A~KVRrl~~g~vlaGFAGstADAftL~erfE~KLe~~~g~L~raaVELAK 80 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLRAAVELAK 80 (171)
T ss_pred CEEEEEEECCEEEEEECCEEEECCEEECCCCEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 97999998999999957733256787837704999947997999735617889999999999999775820799999998
Q ss_pred HHHHHHHHHHCCCEEEECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCE
Q ss_conf 9976112220131045137876469980586311413279960642345788985207-899989999999997540110
Q gi|254780828|r 96 DWRMDKYLRNLEAMILIADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMS-TQNSAEEIARKAMSIAADICV 174 (190)
Q Consensus 96 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~-~~~sa~ela~~Al~~A~erDv 174 (190)
.++..+|+++..++++..|.+..++.++.+....+++++.|+|||++||+....++++ ++|+|+|++++||.+|+|+||
T Consensus 81 ~WRtDk~LRrLEAmlivad~~~~l~iSG~GdViEP~~~i~aIGSGg~yA~aAArAL~~~~~l~A~~Ia~~sl~IAa~ici 160 (171)
T cd01913 81 DWRTDRYLRRLEAMLIVADKEHTLLISGNGDVIEPDDGIAAIGSGGNYALAAARALLDHTDLSAEEIARKALKIAADICI 160 (171)
T ss_pred HHHHHHHHHHHHHHEEEECCCCEEEEECCCCEECCCCCEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHEEE
T ss_conf 86122888877735057756748999268656778887689728769999999998764899999999999998862578
Q ss_pred EECCCEEEEEE
Q ss_conf 22595699999
Q gi|254780828|r 175 YTNHNIVLETL 185 (190)
Q Consensus 175 yTgd~i~i~~i 185 (190)
||.+|+++++|
T Consensus 161 yTN~n~~ie~l 171 (171)
T cd01913 161 YTNHNITVEEL 171 (171)
T ss_pred ECCCCEEEEEC
T ss_conf 60896899859
No 16
>PRK05456 ATP-dependent protease peptidase subunit; Provisional
Probab=100.00 E-value=4.4e-32 Score=220.42 Aligned_cols=171 Identities=69% Similarity=1.075 Sum_probs=166.5
Q ss_pred CEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf 71799999799799981365450536774451057981597599973130588999999999999985366563067999
Q gi|254780828|r 15 ATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPNQLLRSSVELA 94 (190)
Q Consensus 15 GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (190)
||||++|+.++.|+||+|.|+|.|+.|...+.+||+++.+..+++||+|..+|...+.+.++.++++|+.+..++...++
T Consensus 1 gTTIl~Vr~~g~v~iaGDGQVT~G~~V~K~~a~KVRrl~~~~Vi~GFAGstADAftLferfE~KLe~~~GnL~RaaVELA 80 (172)
T PRK05456 1 GTTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQHQGNLLRAAVELA 80 (172)
T ss_pred CCEEEEEEECCEEEEEECCEEEECCEEECCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 96899999899999982776531768880663267991699699983540778999999999999977306789999999
Q ss_pred HHHHHHHHHHHCCCEEEECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCC
Q ss_conf 99976112220131045137876469980586311413279960642345788985207-89998999999999754011
Q gi|254780828|r 95 KDWRMDKYLRNLEAMILIADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMS-TQNSAEEIARKAMSIAADIC 173 (190)
Q Consensus 95 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~-~~~sa~ela~~Al~~A~erD 173 (190)
+.++..+|+++..++++..|.+..++.++.+....++++..|+|||++||+..-.++++ ++|+|+|++++||.+|+|+|
T Consensus 81 K~WRtDk~LRrLEAmlivaD~~~~llisG~GDViEPddgi~aIGSGG~yA~aAArAL~~~~~l~a~~Ia~~al~IAa~iC 160 (172)
T PRK05456 81 KDWRTDRYLRRLEAMLIVADKEASLIISGNGDVIEPEDGIIAIGSGGNYALAAARALLENTDLSAEEIAEKALKIAGDIC 160 (172)
T ss_pred HHHHHHHHHHHHHHHEEEECCCCEEEEECCCCEECCCCCEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHEE
T ss_conf 99854078887651347764575899925755668998768872867999999999987279999999999999886436
Q ss_pred EEECCCEEEEEE
Q ss_conf 022595699999
Q gi|254780828|r 174 VYTNHNIVLETL 185 (190)
Q Consensus 174 vyTgd~i~i~~i 185 (190)
|||.+|+++++|
T Consensus 161 iyTN~ni~ve~l 172 (172)
T PRK05456 161 IYTNHNITIEEL 172 (172)
T ss_pred EEECCCEEEEEC
T ss_conf 873894899849
No 17
>KOG0173 consensus
Probab=99.98 E-value=1.1e-31 Score=217.88 Aligned_cols=175 Identities=18% Similarity=0.148 Sum_probs=151.9
Q ss_pred EEECCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf 77637179999979979998136545053677445105798159759997313058899999999999998536656306
Q gi|254780828|r 11 VKMHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPNQLLRSS 90 (190)
Q Consensus 11 ~~~~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~~~~~~~ 90 (190)
+.-.||||+||.|+||||+|||||+|.|..|+.+|++||+.+.+++++|| +|.++|.....+....+++++.....+.+
T Consensus 33 ~tkTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~IyccG-AGtAADte~vt~m~ss~l~Lh~l~t~R~~ 111 (271)
T KOG0173 33 ATKTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCCG-AGTAADTEMVTRMISSNLELHRLNTGRKP 111 (271)
T ss_pred CCCCCCEEEEEEECCEEEEEECCCCCCCCEEECCHHHHHHHCCCCEEECC-CCCHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 32467589999968827984034455897653311687762066258705-77401189999998777898874148777
Q ss_pred HHHHHHHH----HHHHHHHCCCEEE--ECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCHH---HH
Q ss_conf 79999997----6112220131045--137876469980586311413279960642345788985207899989---99
Q gi|254780828|r 91 VELAKDWR----MDKYLRNLEAMIL--IADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAE---EI 161 (190)
Q Consensus 91 ~~~~~~~~----~~~y~~~~~~~~~--~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa~---el 161 (190)
........ +++|+....+.++ ++|..+|++|...+.|+...-+|.+.||||..|+.+||+.|++||+.+ +|
T Consensus 112 rVv~A~~mlkQ~LFrYqG~IgA~LiiGGvD~TGpHLy~i~phGStd~~Pf~alGSGslaAmsvlEsr~k~dlt~eea~~L 191 (271)
T KOG0173 112 RVVTALRMLKQHLFRYQGHIGAALILGGVDPTGPHLYSIHPHGSTDKLPFTALGSGSLAAMSVLESRWKPDLTKEEAIKL 191 (271)
T ss_pred CEEEHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCEEEECCCCCCCCCCEEEECCCHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 14549999999988755755613577243688871689737997674644552460188899998735766588999999
Q ss_pred HHHHHHHHHCCCEEECCCEEEEEEE
Q ss_conf 9999997540110225956999994
Q gi|254780828|r 162 ARKAMSIAADICVYTNHNIVLETLK 186 (190)
Q Consensus 162 a~~Al~~A~erDvyTgd~i~i~~i~ 186 (190)
+.+|+.+..--|..+|.||++.+|+
T Consensus 192 v~eAi~AGi~nDLgSGsnvdlcVI~ 216 (271)
T KOG0173 192 VCEAIAAGIFNDLGSGSNVDLCVIT 216 (271)
T ss_pred HHHHHHHHHCCCCCCCCCEEEEEEE
T ss_conf 9999986420465788866599983
No 18
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.7e-31 Score=214.64 Aligned_cols=176 Identities=69% Similarity=1.068 Sum_probs=170.1
Q ss_pred EECCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 76371799999799799981365450536774451057981597599973130588999999999999985366563067
Q gi|254780828|r 12 KMHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPNQLLRSSV 91 (190)
Q Consensus 12 ~~~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~~~~~~~~ 91 (190)
++|+|||++++.++-|+||+|.++|.|+.|..++.+||+++-+.-+++|++|..+|...+...++.++++++....+++.
T Consensus 1 ~~h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~g~L~raav 80 (178)
T COG5405 1 TFHMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQGDLFRAAV 80 (178)
T ss_pred CCEEEEEEEEEECCEEEEECCCEEEECCEEEECCHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 91168999996398699952764765324340448989876078388874354016999999999999875680899999
Q ss_pred HHHHHHHHHHHHHHCCCEEEECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHH
Q ss_conf 999999761122201310451378764699805863114132799606423457889852078-9998999999999754
Q gi|254780828|r 92 ELAKDWRMDKYLRNLEAMILIADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMST-QNSAEEIARKAMSIAA 170 (190)
Q Consensus 92 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~-~~sa~ela~~Al~~A~ 170 (190)
.+++.++..+|+++...+++..|....++.++.+....++++++|+|||..||+++..++++. +++|+|++++++.+|.
T Consensus 81 elaKdwr~Dk~lr~LEAmllVad~~~~l~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~~~lsA~eIa~~sl~iA~ 160 (178)
T COG5405 81 ELAKDWRTDKYLRKLEAMLLVADKTHILIITGNGDVIEPEDDIIAIGSGGNYALSAARALMENTELSAREIAEKSLKIAG 160 (178)
T ss_pred HHHHHHHHHHHHHHHHHHEEEECCCCEEEEECCCCEECCCCCEEEECCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 99875610158888662447867885899952762565788868872783389999999986369999999999986553
Q ss_pred CCCEEECCCEEEEEEEC
Q ss_conf 01102259569999941
Q gi|254780828|r 171 DICVYTNHNIVLETLKV 187 (190)
Q Consensus 171 erDvyTgd~i~i~~i~~ 187 (190)
|+||||++|+.++++.-
T Consensus 161 eiciyTN~ni~ve~l~~ 177 (178)
T COG5405 161 DICIYTNHNIVVEELRL 177 (178)
T ss_pred EEEEECCCCEEEEEEEC
T ss_conf 18885399579998306
No 19
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=99.97 E-value=3.3e-30 Score=208.70 Aligned_cols=173 Identities=21% Similarity=0.146 Sum_probs=145.5
Q ss_pred CCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCC--CCCHH
Q ss_conf 3717999997997999813654505367744510579815975999731305889999999999999853665--63067
Q gi|254780828|r 14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPNQL--LRSSV 91 (190)
Q Consensus 14 ~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~~~--~~~~~ 91 (190)
+|||+||++++||||||+|+|++ +.++.+++++||++|++|++++ .+|.++|.+.+.+.++.++++++... ..++.
T Consensus 28 ~GtT~vgi~~kdgVVlaadkr~~-~~li~~~~~~KI~~I~~~I~~~-~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~v~ 105 (229)
T TIGR03633 28 RGTTAVGIKTKDGVVLAVDKRIT-SKLVEPSSIEKIFKIDDHIGAA-TSGLVADARVLIDRARIEAQINRLTYGEPIDVE 105 (229)
T ss_pred CCCCEEEEEECCEEEEEEEECCC-CCCCCCCCCCEEEEECCCEEEE-ECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 49888999979999999950577-7654577534088842866898-604665389999999999998788738888699
Q ss_pred HHHHHHHHHHH-------HHHCCC--EEEECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCHH---
Q ss_conf 99999976112-------220131--045137876469980586311413279960642345788985207899989---
Q gi|254780828|r 92 ELAKDWRMDKY-------LRNLEA--MILIADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAE--- 159 (190)
Q Consensus 92 ~~~~~~~~~~y-------~~~~~~--~~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa~--- 159 (190)
.+++.+....+ .+++.. .+.+.|..+|.+|..||+|+..+.++.|+|||+.+|++.||+.|+++|+.+
T Consensus 106 ~la~~ls~~~q~~tq~~~~RP~g~~lii~G~D~~g~~Ly~~dpsG~~~~~~~~aiGsgs~~a~~~Le~~y~~~mt~eea~ 185 (229)
T TIGR03633 106 TLAKKICDLKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGALLEYKATAIGAGRQAVTEFLEKEYREDLSLDEAI 185 (229)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCEEEEEECCCCEEECCEEEECCCHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 99999999999985445757764058999984899879999189408851479978866999999997656899999999
Q ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEECCC
Q ss_conf 999999997540110225956999994178
Q gi|254780828|r 160 EIARKAMSIAADICVYTNHNIVLETLKVGD 189 (190)
Q Consensus 160 ela~~Al~~A~erDvyTgd~i~i~~i~~~~ 189 (190)
+++.+||+.|.+ |-.+|++|+|.+|+.++
T Consensus 186 ~la~~al~~~~~-~~~s~~~iev~iit~~~ 214 (229)
T TIGR03633 186 ELALKALYSAVE-DKLTPENVEVAYITVED 214 (229)
T ss_pred HHHHHHHHHHHH-CCCCCCCEEEEEEECCC
T ss_conf 999999999973-67998978999998589
No 20
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.97 E-value=2.6e-30 Score=209.38 Aligned_cols=171 Identities=22% Similarity=0.121 Sum_probs=144.7
Q ss_pred CCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCC--CCCCHH
Q ss_conf 371799999799799981365450536774451057981597599973130588999999999999985366--563067
Q gi|254780828|r 14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPNQ--LLRSSV 91 (190)
Q Consensus 14 ~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~~--~~~~~~ 91 (190)
+|||+|||+++||||||+|+|++ ++++.+++.+||++|++|++++ .+|.++|.+.+.+.++.++.+++.. ..+++.
T Consensus 27 ~GtT~vgik~kdGVVlaadkr~~-~~li~~~~~~KI~~I~~~i~~~-~sG~~~D~~~lv~~~r~~~~~~~~~~g~~i~v~ 104 (211)
T cd03756 27 RGTTALGIKCKEGVVLAVDKRIT-SKLVEPESIEKIYKIDDHVGAA-TSGLVADARVLIDRARVEAQIHRLTYGEPIDVE 104 (211)
T ss_pred CCCCEEEEEECCEEEEEEECCCC-CCCCCCCCCCEEEEECCCEEEE-EEECCHHHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 59878999979999999921677-7655578644189944984899-975437699999999999999999988997499
Q ss_pred HHHHHHHHHHHH-------HHCCC--EEEECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCHH---
Q ss_conf 999999761122-------20131--045137876469980586311413279960642345788985207899989---
Q gi|254780828|r 92 ELAKDWRMDKYL-------RNLEA--MILIADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAE--- 159 (190)
Q Consensus 92 ~~~~~~~~~~y~-------~~~~~--~~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa~--- 159 (190)
.+++.+....+. +++.. .+.+.|.++|.+|..||.|+..+.++.|+|||+.+|++.||+.|+++|+.+
T Consensus 105 ~l~~~ls~~~~~yt~~~~~RP~g~s~ii~G~D~~g~~Ly~~dpsG~~~~~~~~a~Gsgs~~a~~~Le~~y~~~mt~eea~ 184 (211)
T cd03756 105 VLVKKICDLKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGAYNEYKATAIGSGRQAVTEFLEKEYKEDMSLEEAI 184 (211)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCEEEEEECCEEEEEECEEEECCCHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 99999999999986355657664268998862999889999388459983779989875999999997566998999999
Q ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEEC
Q ss_conf 9999999975401102259569999941
Q gi|254780828|r 160 EIARKAMSIAADICVYTNHNIVLETLKV 187 (190)
Q Consensus 160 ela~~Al~~A~erDvyTgd~i~i~~i~~ 187 (190)
+++.+||+.|.+ |-.++++|++.+|++
T Consensus 185 ~la~~aL~~a~~-~~~~~~~ieva~it~ 211 (211)
T cd03756 185 ELALKALYAALE-ENETPENVEIAYVTV 211 (211)
T ss_pred HHHHHHHHHHHH-CCCCCCCEEEEEEEC
T ss_conf 999999999984-679989889999979
No 21
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.97 E-value=2.6e-29 Score=203.16 Aligned_cols=171 Identities=21% Similarity=0.112 Sum_probs=145.4
Q ss_pred CCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCC--CCCCCHH
Q ss_conf 37179999979979998136545053677445105798159759997313058899999999999998536--6563067
Q gi|254780828|r 14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPN--QLLRSSV 91 (190)
Q Consensus 14 ~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~--~~~~~~~ 91 (190)
+|||+|||+++||||||+|+|++.+.++.+++.+||++|++|++++ .+|.++|++.+.+.++.++++++. ...+++.
T Consensus 28 ~G~T~Vgik~kdgVVlaadkr~~s~l~~~~~~~~Ki~~I~~~ig~~-~sG~~~D~~~lv~~~r~~a~~~~~~~g~~i~v~ 106 (213)
T cd03752 28 HAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACA-VAGITSDANILINYARLIAQRYLYSYQEPIPVE 106 (213)
T ss_pred CCCCEEEEEECCEEEEEEECCCCCCCCCCCCCCCCEEEECCCEEEE-EECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 4797899997999999996136776642777632089953876899-722554889999999999999999809964299
Q ss_pred HHHHHHHHHH-------HHHHCCCE--EEECCC-CCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCHHH-
Q ss_conf 9999997611-------22201310--451378-764699805863114132799606423457889852078999899-
Q gi|254780828|r 92 ELAKDWRMDK-------YLRNLEAM--ILIADK-TITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAEE- 160 (190)
Q Consensus 92 ~~~~~~~~~~-------y~~~~~~~--~~~~~~-~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa~e- 160 (190)
.+++.+...+ ..+++... +.+.|. .+|.+|..||+|+..+.++.|+|||+..|++.||+.|+++|+.+|
T Consensus 107 ~la~~ls~~~q~~t~~~~~RP~gvs~ii~G~D~~~g~~Ly~~dpsG~~~~~~a~aiGsgs~~a~~~LEk~y~~~mt~eea 186 (213)
T cd03752 107 QLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYGFQLYQSDPSGNYSGWKATAIGNNNQAAQSLLKQDYKDDMTLEEA 186 (213)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHCCCCCCHHHH
T ss_conf 99999999999873545625533489999880799946999889866872228980786499999998754489999999
Q ss_pred --HHHHHHHHHHCCCEEECCCEEEEEE
Q ss_conf --9999999754011022595699999
Q gi|254780828|r 161 --IARKAMSIAADICVYTNHNIVLETL 185 (190)
Q Consensus 161 --la~~Al~~A~erDvyTgd~i~i~~i 185 (190)
++.+||+.|.++|..|+++|+|.+|
T Consensus 187 i~lai~al~~~~~~~~~~~~~iei~vi 213 (213)
T cd03752 187 LALAVKVLSKTMDSTKLTSEKLEFATL 213 (213)
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf 999999999997043688885799979
No 22
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=99.97 E-value=6.1e-29 Score=200.80 Aligned_cols=169 Identities=30% Similarity=0.272 Sum_probs=145.1
Q ss_pred EEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCC--CCCCCHHHH
Q ss_conf 179999979979998136545053677445105798159759997313058899999999999998536--656306799
Q gi|254780828|r 16 TTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPN--QLLRSSVEL 93 (190)
Q Consensus 16 TTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~--~~~~~~~~~ 93 (190)
||+|||+++||||||||+|++.|.++..++.+||++++++++++ .+|..+|++.+.+.++.++++++. ....++..+
T Consensus 1 ~t~vgi~~~dgVvlaaD~~~~~g~~~~~~~~~Ki~~i~~~i~~~-~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l 79 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCA-FAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEAL 79 (182)
T ss_pred CCEEEEEECCEEEEEECCCCCCCCEECCCCCCEEEEECCCEEEE-ECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 93999998999999987875669875267654499954847999-64565128899999999999878861989889999
Q ss_pred HHHHHHHHHHH-----HCCCE--EEECCC-CCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCHH---HHH
Q ss_conf 99997611222-----01310--451378-76469980586311413279960642345788985207899989---999
Q gi|254780828|r 94 AKDWRMDKYLR-----NLEAM--ILIADK-TITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAE---EIA 162 (190)
Q Consensus 94 ~~~~~~~~y~~-----~~~~~--~~~~~~-~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa~---ela 162 (190)
++.++...|.+ ++... +.+.|. ++|+++..|+.|...+.+++|+|+|+.+|+++||+.|+++||.+ +++
T Consensus 80 a~~ls~~l~~~~~~~~p~~~~~iv~G~d~~~~~~L~~vd~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l~ 159 (182)
T cd01906 80 AKLLANLLYEYTQSLRPLGVSLLVAGVDEEGGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKLYKPDMTLEEAIELA 159 (182)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCEEEEECCCCCEEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 99999999997645787407999998836999779998799348995389985646999999997602598999999999
Q ss_pred HHHHHHHHCCCEEECCCEEEEEE
Q ss_conf 99999754011022595699999
Q gi|254780828|r 163 RKAMSIAADICVYTNHNIVLETL 185 (190)
Q Consensus 163 ~~Al~~A~erDvyTgd~i~i~~i 185 (190)
++||..|.+||+++|.++++.+|
T Consensus 160 ~~~l~~~~~~d~~~g~~~~v~vi 182 (182)
T cd01906 160 LKALKSALERDLYSGGNIEVAVI 182 (182)
T ss_pred HHHHHHHHHHCCCCCCCEEEEEC
T ss_conf 99999999745777994899979
No 23
>PRK03996 proteasome subunit alpha; Provisional
Probab=99.96 E-value=4.1e-28 Score=195.59 Aligned_cols=173 Identities=22% Similarity=0.147 Sum_probs=145.8
Q ss_pred CCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCC--CCCCCHH
Q ss_conf 37179999979979998136545053677445105798159759997313058899999999999998536--6563067
Q gi|254780828|r 14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPN--QLLRSSV 91 (190)
Q Consensus 14 ~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~--~~~~~~~ 91 (190)
+|||+|||+++||||||+|+|++ +.++.+++.+|||+|++|++++ .+|.++|.+.+.+.++.++++|+. ...+++.
T Consensus 34 ~GtT~Vgik~kdgVVla~~kr~~-s~li~~~~~~KI~~I~~~ig~~-~sG~~aD~~~lv~~~r~ea~~~~~~~g~~i~v~ 111 (245)
T PRK03996 34 RGTTAVGIKCKDGVVLAVDKRIT-SKLIEPSSIEKIFKIDDHIGAA-SAGLVADARVLIDRARVEAQINRLTYDEPIDVE 111 (245)
T ss_pred CCCCEEEEEECCEEEEEEEECCC-CCCCCCCCCCEEEEECCCEEEE-EECCCCCHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 28978999969989999951478-7661677434089860746899-730554289999999999999999869973199
Q ss_pred HHHHHHHHHHH-------HHHCCC--EEEECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCHHH--
Q ss_conf 99999976112-------220131--0451378764699805863114132799606423457889852078999899--
Q gi|254780828|r 92 ELAKDWRMDKY-------LRNLEA--MILIADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAEE-- 160 (190)
Q Consensus 92 ~~~~~~~~~~y-------~~~~~~--~~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa~e-- 160 (190)
.+++.+..... .+++.. .+.+.|..+|.+|..||+|...+..+.|+|||++.|++.||+.|+++|+.+|
T Consensus 112 ~la~~ls~~~q~~tq~~g~RPfgv~lli~G~D~~gp~Ly~idpsG~~~~~~a~AiGsgs~~a~~~LEk~y~~~ms~eeai 191 (245)
T PRK03996 112 YLAKKICDLKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGAYIEYKATAIGSGRDTVMEFLEKEYKEDLSLEEAI 191 (245)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCEEEEECCCCCEEEEEEEEECCCHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 99999999999973313557730489999970898679998799887610379989883999999986555899999999
Q ss_pred -HHHHHHHHHHCCCEEECCCEEEEEEECCC
Q ss_conf -99999997540110225956999994178
Q gi|254780828|r 161 -IARKAMSIAADICVYTNHNIVLETLKVGD 189 (190)
Q Consensus 161 -la~~Al~~A~erDvyTgd~i~i~~i~~~~ 189 (190)
+|.+||..|.+.+. ++++|+|.+|+.++
T Consensus 192 ~lal~aL~~~~~~~~-~~~~iEi~iv~~~~ 220 (245)
T PRK03996 192 ELALKALASATEGKL-DPENIEIAVIDVET 220 (245)
T ss_pred HHHHHHHHHHHCCCC-CCCCEEEEEEECCC
T ss_conf 999999999960679-98847999998589
No 24
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=99.96 E-value=3.7e-28 Score=195.92 Aligned_cols=169 Identities=18% Similarity=0.113 Sum_probs=140.9
Q ss_pred CCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCC--CCCCHH
Q ss_conf 371799999799799981365450536774451057981597599973130588999999999999985366--563067
Q gi|254780828|r 14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPNQ--LLRSSV 91 (190)
Q Consensus 14 ~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~~--~~~~~~ 91 (190)
+|||+|||+++||||||+|+|.+ +.++.+++.+|||+|+++++++ .+|.++|.+.+.+.++.++.+++.. ..+++.
T Consensus 26 ~GtT~Vgik~~~gVvlaad~r~~-~~~~~~~~~~Ki~~I~~~i~~~-~sG~~~D~~~l~~~~r~~~~~~~~~~g~~i~v~ 103 (209)
T cd01911 26 NGSTAVGIKGKDGVVLAVEKKVT-SKLLDPSSVEKIFKIDDHIGCA-VAGLTADARVLVNRARVEAQNYRYTYGEPIPVE 103 (209)
T ss_pred CCCCEEEEEECCEEEEEEECCCC-CCCCCCCCCCEEEEECCCEEEE-EEECHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 49858999938879999951357-4440255555499971858999-984328899999999999999999829998799
Q ss_pred HHHHHHHHHH-------HHHHCCC--EEEECCC-CCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCHH--
Q ss_conf 9999997611-------2220131--0451378-76469980586311413279960642345788985207899989--
Q gi|254780828|r 92 ELAKDWRMDK-------YLRNLEA--MILIADK-TITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAE-- 159 (190)
Q Consensus 92 ~~~~~~~~~~-------y~~~~~~--~~~~~~~-~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa~-- 159 (190)
.+++.+.... +.+++.. .+.+.|. .+|.+|..||.|+..+..+.|+|||+.+|++.||++|+++|+.+
T Consensus 104 ~la~~is~~~q~~t~~~~~RP~g~s~ii~G~D~~~g~~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~~ea 183 (209)
T cd01911 104 VLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGPQLYQTDPSGTYFGYKATAIGKGSQEAKTFLEKRYKKDLTLEEA 183 (209)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCEEEEECCCCCEEEEEEEEECCCHHHHHHHHHHHCCCCCCHHHH
T ss_conf 99999999999976303544652479999896699977999858986885237998988699999999863479999999
Q ss_pred -HHHHHHHHHHHCCCEEECCCEEEEEE
Q ss_conf -99999999754011022595699999
Q gi|254780828|r 160 -EIARKAMSIAADICVYTNHNIVLETL 185 (190)
Q Consensus 160 -ela~~Al~~A~erDvyTgd~i~i~~i 185 (190)
+++.+||+.|.++|. ++++|++.+|
T Consensus 184 i~la~~al~~a~~~d~-~~~~iei~ii 209 (209)
T cd01911 184 IKLALKALKEVLEEDK-KAKNIEIAVV 209 (209)
T ss_pred HHHHHHHHHHHHHCCC-CCCCEEEEEC
T ss_conf 9999999999984679-9787799979
No 25
>PTZ00246 proteasome subunit alpha; Provisional
Probab=99.96 E-value=9.7e-28 Score=193.27 Aligned_cols=175 Identities=18% Similarity=0.087 Sum_probs=148.6
Q ss_pred CCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCC--CCCCCHH
Q ss_conf 37179999979979998136545053677445105798159759997313058899999999999998536--6563067
Q gi|254780828|r 14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPN--QLLRSSV 91 (190)
Q Consensus 14 ~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~--~~~~~~~ 91 (190)
+|+|+|||+++||||||+|+|++++.++.+++.+|||+|++|++++ ++|..+|++.+.+.++.+++.++. ...+++.
T Consensus 30 ~g~ttVGIk~kdgVVlaaekr~~~~l~~~~~~~~KI~~I~~~ig~a-~aGl~aD~r~lv~~~R~ea~~~~~~~~~~i~v~ 108 (253)
T PTZ00246 30 NASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCA-VAGLTADANILINQCRLYAQRYRYNYGEPQPVE 108 (253)
T ss_pred CCCCEEEEEECCEEEEEEECCCCCCCCCCCCCCCCEEEECCCCEEE-EECCCHHHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 4697899997999999995367886755665545279966984799-973657589999999999999999859998799
Q ss_pred HHHHHHHHHH-------HHHHCCCEEE--ECCC-CCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCHHH-
Q ss_conf 9999997611-------2220131045--1378-764699805863114132799606423457889852078999899-
Q gi|254780828|r 92 ELAKDWRMDK-------YLRNLEAMIL--IADK-TITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAEE- 160 (190)
Q Consensus 92 ~~~~~~~~~~-------y~~~~~~~~~--~~~~-~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa~e- 160 (190)
.+++.+...+ ..++|...++ ++|. .+|.+|..||+|+..+..+.|+|+|++.|++.||+.|+++||.+|
T Consensus 109 ~La~~la~~~q~yTq~~g~RPfgvslli~G~D~~~gp~Ly~~DPsG~~~~~ka~AiG~gs~~a~~~LEk~y~~~ms~eea 188 (253)
T PTZ00246 109 QLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDENLGYQLYHTDPSGNYSGWKATAIGTNNQTAQSILKQEWKEDMTLEQG 188 (253)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCEEEEECCCCCEEEEEEEEECCCHHHHHHHHHHHCCCCCCHHHH
T ss_conf 99999999999873536756742799999872899967899879887854579998988089999998746699999999
Q ss_pred --HHHHHHHHHHCCCEEECCCEEEEEEECCC
Q ss_conf --99999997540110225956999994178
Q gi|254780828|r 161 --IARKAMSIAADICVYTNHNIVLETLKVGD 189 (190)
Q Consensus 161 --la~~Al~~A~erDvyTgd~i~i~~i~~~~ 189 (190)
++.+||..+.++|..++++|++.+|+.++
T Consensus 189 i~lAi~aL~~~~~~~~~~~~~iEvavvt~~~ 219 (253)
T PTZ00246 189 LLLALKVLTKSMDSTTPKADKIEVGYLSKGN 219 (253)
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEEEECCC
T ss_conf 9999999999985647988838999998268
No 26
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.96 E-value=4.3e-28 Score=195.47 Aligned_cols=169 Identities=17% Similarity=0.120 Sum_probs=139.7
Q ss_pred CCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCC--CCCHH
Q ss_conf 3717999997997999813654505367744510579815975999731305889999999999999853665--63067
Q gi|254780828|r 14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPNQL--LRSSV 91 (190)
Q Consensus 14 ~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~~~--~~~~~ 91 (190)
+|||+|||+++||||||+|+|++. .++.+++.+|||+|++|++++ ++|.++|++.+.+.++.++++++... .+++.
T Consensus 26 ~GtT~Vgik~~dgVVla~~kr~~s-~l~~~~~~~Ki~~I~~~i~~~-~sG~~~D~~~lv~~~r~e~~~~~~~~~~~i~v~ 103 (213)
T cd03753 26 LGSTAIGIKTKEGVVLAVEKRITS-PLMEPSSVEKIMEIDDHIGCA-MSGLIADARTLIDHARVEAQNHRFTYNEPMTVE 103 (213)
T ss_pred CCCCEEEEEECCEEEEEEECCCCC-CCCCCCCCCEEEEECCCEEEE-ECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 088789999799999999515776-452454004288834858999-613563299999999999999999739999899
Q ss_pred HHHHHHHHHHH------------HHHCCC--EEEECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCC
Q ss_conf 99999976112------------220131--0451378764699805863114132799606423457889852078999
Q gi|254780828|r 92 ELAKDWRMDKY------------LRNLEA--MILIADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNS 157 (190)
Q Consensus 92 ~~~~~~~~~~y------------~~~~~~--~~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~s 157 (190)
.+++.+....+ .+++.. .+.+.|.++|.+|..||+|+..+.++.|+|||+..|.+.||+.|+++|+
T Consensus 104 ~l~~~ls~l~~~~~~~~~~~~~~~RPfgvs~li~G~D~~gp~Ly~~dpsG~~~~~~~~aiG~gs~~a~~~Le~~y~~~lt 183 (213)
T cd03753 104 SVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDENGPQLFHTDPSGTFTRCDAKAIGSGSEGAQSSLQEKYHKDMT 183 (213)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCEEEEECCCCCEEEECEEEECCCHHHHHHHHHHHCCCCCC
T ss_conf 99999999999985122221002677522899999839988899988993588108899898879999999985569989
Q ss_pred HHH---HHHHHHHHHHCCCEEECCCEEEEEE
Q ss_conf 899---9999999754011022595699999
Q gi|254780828|r 158 AEE---IARKAMSIAADICVYTNHNIVLETL 185 (190)
Q Consensus 158 a~e---la~~Al~~A~erDvyTgd~i~i~~i 185 (190)
.+| ++.+||+.+.| +-.++.+|++.+|
T Consensus 184 ~eeai~lai~aL~~~~~-~~~~~~~ieva~i 213 (213)
T cd03753 184 LEEAEKLALSILKQVME-EKLNSTNVELATV 213 (213)
T ss_pred HHHHHHHHHHHHHHHHH-CCCCCCCEEEEEC
T ss_conf 99999999999999985-3789787799979
No 27
>KOG0174 consensus
Probab=99.96 E-value=1.4e-28 Score=198.52 Aligned_cols=175 Identities=22% Similarity=0.153 Sum_probs=143.1
Q ss_pred EECCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 76371799999799799981365450536774451057981597599973130588999999999999985366563067
Q gi|254780828|r 12 KMHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPNQLLRSSV 91 (190)
Q Consensus 12 ~~~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~~~~~~~~ 91 (190)
...||||+||+|+|||||+||+|.|.|.+|.+|...|+.+|+|+++|| .+|.++|.|.....+++++.+|......++.
T Consensus 16 vstGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cC-RSGSAADtQaiaD~~~Y~L~~~~~q~~~~p~ 94 (224)
T KOG0174 16 VSTGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCC-RSGSAADTQAIADIVRYHLELYTIQENKPPL 94 (224)
T ss_pred CCCCCEEEEEEECCCEEEECCCCCCCHHHHHHHHCCCCEECCCCEEEE-CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 125846999997694898116775403777755214530132647996-4786466789999999988775430189916
Q ss_pred HHHHHH--HHHHHHHH--CCCEEE--ECCC-CCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCHHH---H
Q ss_conf 999999--76112220--131045--1378-764699805863114132799606423457889852078999899---9
Q gi|254780828|r 92 ELAKDW--RMDKYLRN--LEAMIL--IADK-TITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAEE---I 161 (190)
Q Consensus 92 ~~~~~~--~~~~y~~~--~~~~~~--~~~~-~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa~e---l 161 (190)
....+. +..-|.++ ..+.++ ++|. ++..+|.....|+..+.+|+..||||.|++|.||+.||++|+.|| +
T Consensus 95 v~~aA~l~r~~~Y~~re~L~AgliVAGwD~~~gGqVY~iplGG~l~rq~~aIgGSGStfIYGf~D~~~r~nMt~EE~~~f 174 (224)
T KOG0174 95 VHTAASLFREICYNYREMLSAGLIVAGWDEKEGGQVYSIPLGGSLTRQPFAIGGSGSTFIYGFCDANWRPNMTLEECVRF 174 (224)
T ss_pred HHHHHHHHHHHHHHCHHHHHCCEEEEECCCCCCCEEEEEECCCEEEECCEEECCCCCEEEEEEEHHHCCCCCCHHHHHHH
T ss_conf 78999999999875877652142786325566963898614865762634322677414554433221799999999999
Q ss_pred HHHHHHHHHCCCEEECCCEEEEEEEC
Q ss_conf 99999975401102259569999941
Q gi|254780828|r 162 ARKAMSIAADICVYTNHNIVLETLKV 187 (190)
Q Consensus 162 a~~Al~~A~erDvyTgd~i~i~~i~~ 187 (190)
+++|+..|.+||=-+|.-|-+.+|..
T Consensus 175 vk~Av~lAi~rDGsSGGviR~~~I~~ 200 (224)
T KOG0174 175 VKNAVSLAIERDGSSGGVIRLVIINK 200 (224)
T ss_pred HHHHHHHHHHCCCCCCCEEEEEEECC
T ss_conf 99999999860688787899999805
No 28
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.96 E-value=1.1e-27 Score=192.87 Aligned_cols=172 Identities=15% Similarity=0.056 Sum_probs=144.9
Q ss_pred CCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCC--CCCCHH
Q ss_conf 371799999799799981365450536774451057981597599973130588999999999999985366--563067
Q gi|254780828|r 14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPNQ--LLRSSV 91 (190)
Q Consensus 14 ~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~~--~~~~~~ 91 (190)
+|||+|||+++||||||+|+|.+ +.++.+++++|||+|++|++++ ++|..+|.+.+.+.++.++.+++.. ..+++.
T Consensus 26 ~G~t~VGik~~dgVVla~~kr~~-s~l~~~~~~~Ki~~I~~~Ig~~-~sG~~~D~~~lv~~~r~~a~~~~~~~~~~i~v~ 103 (227)
T cd03750 26 SGAPSVGIKAANGVVLATEKKVP-SPLIDESSVHKVEQITPHIGMV-YSGMGPDFRVLVKKARKIAQQYYLVYGEPIPVS 103 (227)
T ss_pred CCCCEEEEEECCEEEEEEECCCC-CCCCCCCCCCCEEEECCCEEEE-EEECCCCHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 48878999959999999950577-7445876501189965975899-962560089999999999999999969973499
Q ss_pred HHHHHHHHHH-------HHHHCCCE--EEECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCHHH--
Q ss_conf 9999997611-------22201310--451378764699805863114132799606423457889852078999899--
Q gi|254780828|r 92 ELAKDWRMDK-------YLRNLEAM--ILIADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAEE-- 160 (190)
Q Consensus 92 ~~~~~~~~~~-------y~~~~~~~--~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa~e-- 160 (190)
.+++.+...+ ..+|+... +.+.|.++|.+|..||+|+..+..+.|+|+|+..|+++||+.|+++|+.+|
T Consensus 104 ~l~~~ls~~~q~~tq~~~~RPfgvslli~G~D~~gp~Ly~~dPsG~~~~~~a~aiG~~s~~a~~~LEk~~~~~ms~eeai 183 (227)
T cd03750 104 QLVREIASVMQEYTQSGGVRPFGVSLLIAGWDEGGPYLYQVDPSGSYFTWKATAIGKNYSNAKTFLEKRYNEDLELEDAI 183 (227)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCEEEEECCCCCEECCCEEECCCCHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 99999999999973457725754067999981898789997799877623289757332999999998654899999999
Q ss_pred -HHHHHHHHHHCCCEEECCCEEEEEEECC
Q ss_conf -9999999754011022595699999417
Q gi|254780828|r 161 -IARKAMSIAADICVYTNHNIVLETLKVG 188 (190)
Q Consensus 161 -la~~Al~~A~erDvyTgd~i~i~~i~~~ 188 (190)
++.+||+.+.++|. |+++|+|.+|+.+
T Consensus 184 ~lai~aL~~~~~~~~-~~~~ievavi~~~ 211 (227)
T cd03750 184 HTAILTLKEGFEGQM-TEKNIEIGICGET 211 (227)
T ss_pred HHHHHHHHHHHHCCC-CCCEEEEEEEECC
T ss_conf 999999999972669-9880899999789
No 29
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.96 E-value=1.4e-27 Score=192.20 Aligned_cols=167 Identities=18% Similarity=0.102 Sum_probs=138.3
Q ss_pred CCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCC--CCCCHH
Q ss_conf 371799999799799981365450536774451057981597599973130588999999999999985366--563067
Q gi|254780828|r 14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPNQ--LLRSSV 91 (190)
Q Consensus 14 ~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~~--~~~~~~ 91 (190)
+|||+|||+++||||||+|+|.+. .++.+++.+|||+|++|++++ .+|.++|++.+.+.++.++++++.. ...++.
T Consensus 26 ~GtT~vGi~~kdgVVlaa~kr~~~-~l~~~~~~~KI~~I~~~i~~~-~aG~~~D~~~lv~~~r~ea~~~~~~~~~~i~v~ 103 (207)
T cd03755 26 KGTTAVGVRGKDCVVLGVEKKSVA-KLQDPRTVRKICMLDDHVCLA-FAGLTADARVLINRARLECQSHRLTVEDPVTVE 103 (207)
T ss_pred CCCCEEEEEECCEEEEEEECCCCH-HHCCCCCCCEEEECCCCEEEE-EEECCHHHHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 088789999799999999515723-312774203488879988999-963648699999999999999999719985099
Q ss_pred HHHHHHHHHHH-------HHHCCCE--EEECCCC-CCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCHHH-
Q ss_conf 99999976112-------2201310--4513787-64699805863114132799606423457889852078999899-
Q gi|254780828|r 92 ELAKDWRMDKY-------LRNLEAM--ILIADKT-ITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAEE- 160 (190)
Q Consensus 92 ~~~~~~~~~~y-------~~~~~~~--~~~~~~~-~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa~e- 160 (190)
.+++.+...++ .+++... +.+.|.+ +|.+|..||.|+..+..+.|+|||+..|++.||+.|+++|+.+|
T Consensus 104 ~la~~ls~~~q~~t~~~~~RP~gv~~li~G~D~~~~p~Ly~~dpsG~~~~~~~~AiGsgs~~a~~~LE~~y~~~mt~eea 183 (207)
T cd03755 104 YITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTPRLYQTDPSGTYSAWKANAIGRNSKTVREFLEKNYKEEMTRDDT 183 (207)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCEEEEEECCCCCEECCCEEEECCCHHHHHHHHHHHCCCCCCHHHH
T ss_conf 99999999999985578754643589999982899978999858876761568998998099999999646699899999
Q ss_pred --HHHHHHHHHHCCCEEECCCEEEEEE
Q ss_conf --9999999754011022595699999
Q gi|254780828|r 161 --IARKAMSIAADICVYTNHNIVLETL 185 (190)
Q Consensus 161 --la~~Al~~A~erDvyTgd~i~i~~i 185 (190)
+|.+||..+.+. +++||+|++|
T Consensus 184 i~lai~aL~~~~~~---~~~~iev~vi 207 (207)
T cd03755 184 IKLAIKALLEVVQS---GSKNIELAVM 207 (207)
T ss_pred HHHHHHHHHHHHHC---CCCCEEEEEC
T ss_conf 99999999999856---8984079969
No 30
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.95 E-value=2.8e-26 Score=184.12 Aligned_cols=169 Identities=15% Similarity=0.042 Sum_probs=139.6
Q ss_pred CCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCC--CCCCHH
Q ss_conf 371799999799799981365450536774451057981597599973130588999999999999985366--563067
Q gi|254780828|r 14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPNQ--LLRSSV 91 (190)
Q Consensus 14 ~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~~--~~~~~~ 91 (190)
+|||+|||+++||||||+|+|++... ....+|||+|++|++++ ++|..+|++.+.+.++.++++++.. ..+++.
T Consensus 26 ~G~t~VGik~kdgVVla~~kr~~~~l---~~~~~KI~~I~~~ig~~-~sG~~~D~~~lv~~~r~~a~~~~~~~~~~i~v~ 101 (211)
T cd03749 26 QGSATVGLKSKTHAVLVALKRATSEL---SSYQKKIFKVDDHIGIA-IAGLTADARVLSRYMRQECLNYRFVYDSPIPVS 101 (211)
T ss_pred CCCCEEEEEECCEEEEEEECCCCCCC---CCHHCCEEEECCCEEEE-EECCCCCHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 38978999959989999970255557---87001389947980799-824673299999999999999999849975399
Q ss_pred HHHHHHHHHH-------HHHHCCCE--EEECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHC--CCCCHH-
Q ss_conf 9999997611-------22201310--45137876469980586311413279960642345788985207--899989-
Q gi|254780828|r 92 ELAKDWRMDK-------YLRNLEAM--ILIADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMS--TQNSAE- 159 (190)
Q Consensus 92 ~~~~~~~~~~-------y~~~~~~~--~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~--~~~sa~- 159 (190)
.+++.+.... ..|++... +.+.|..+|.+|..||+|+..+..+.|+|||++.|+++||+.|+ ++|+.+
T Consensus 102 ~La~~ls~~~q~~tq~~~~RPfgv~lli~G~D~~gp~Ly~~DPsG~~~~~~a~aiG~gs~~a~~~LEk~y~~~~~~s~ee 181 (211)
T cd03749 102 RLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDESGPHLFQTCPSGNYFEYKATSIGARSQSARTYLERHFEEFEDCSLEE 181 (211)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHCCCCCCCCHHH
T ss_conf 99999999988620023657834689999973996389998799888611089999998899999998726688999999
Q ss_pred --HHHHHHHHHHHCCCE-EECCCEEEEEEE
Q ss_conf --999999997540110-225956999994
Q gi|254780828|r 160 --EIARKAMSIAADICV-YTNHNIVLETLK 186 (190)
Q Consensus 160 --ela~~Al~~A~erDv-yTgd~i~i~~i~ 186 (190)
+||.+||+.+.++|. .|+++|+|+++.
T Consensus 182 av~lA~~aL~~~~~~~~~l~~~~ieiavvg 211 (211)
T cd03749 182 LIKHALRALRETLPGEQELTIKNVSIAIVG 211 (211)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEEEEEC
T ss_conf 999999999998516676486735999969
No 31
>KOG0180 consensus
Probab=99.95 E-value=4.2e-26 Score=183.03 Aligned_cols=179 Identities=15% Similarity=0.165 Sum_probs=154.7
Q ss_pred CCEEECCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHC--CCC
Q ss_conf 817763717999997997999813654505367744510579815975999731305889999999999999853--665
Q gi|254780828|r 9 YAVKMHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYP--NQL 86 (190)
Q Consensus 9 ~~~~~~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~--~~~ 86 (190)
++++++|+++||++++++|.||+|.|........+++.+|||+++|+.++ |.+|.+.|.|++.+.++.+.++|+ +.+
T Consensus 2 ~i~synGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~-GL~glatDvqtl~~~~~fr~nLy~lre~R 80 (204)
T KOG0180 2 SIMSYNGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYL-GLTGLATDVQTLLERLRFRKNLYELREER 80 (204)
T ss_pred CCEEECCCEEEEEECCCEEEEEECCCCCEEEEEEECCCHHHEECCCEEEE-ECCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 61465283699970796589975351333555510341454233780697-04223230899999999887677765411
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEE------CCCCCCEEEEECCCCCE-ECCCEEEEECCHHHHHHHHHHHHCCCCCHH
Q ss_conf 63067999999761122201310451------37876469980586311-413279960642345788985207899989
Q gi|254780828|r 87 LRSSVELAKDWRMDKYLRNLEAMILI------ADKTITLVITGMGDVLE-PENGVMAIGSGGSYALSAARALMSTQNSAE 159 (190)
Q Consensus 87 ~~~~~~~~~~~~~~~y~~~~~~~~~~------~~~~~~~~~~~d~~g~~-~~~~~~a~GSGs~~A~g~Le~~y~~~~sa~ 159 (190)
.+.+..++.+.+...|.+||.|++.. .+.++|+++..|..|.. ....|.++|++++..+|+||++|+|+|+++
T Consensus 81 ~i~P~~~s~mvS~~lYekRfgpYf~~PvVAGl~~~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly~pnmepd 160 (204)
T KOG0180 81 EIKPETFSSMVSSLLYEKRFGPYFTEPVVAGLDDDNKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALYEPNMEPD 160 (204)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCCCCHH
T ss_conf 36817899999999887513875010237324899980586234336767667758961317889998998628999989
Q ss_pred HHHH---HHHHHHHCCCEEECCCEEEEEEECC
Q ss_conf 9999---9999754011022595699999417
Q gi|254780828|r 160 EIAR---KAMSIAADICVYTNHNIVLETLKVG 188 (190)
Q Consensus 160 ela~---~Al~~A~erDvyTgd~i~i~~i~~~ 188 (190)
+|.+ +||..|.|||.-+|=+..+.+|+-+
T Consensus 161 ~LFetisQa~Lna~DRDalSGwGa~vyiI~kd 192 (204)
T KOG0180 161 ELFETISQALLNAVDRDALSGWGAVVYIITKD 192 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 99999999998575043340677189998143
No 32
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.94 E-value=2e-25 Score=178.87 Aligned_cols=170 Identities=19% Similarity=0.100 Sum_probs=135.6
Q ss_pred CCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCC--CCCCCHH
Q ss_conf 37179999979979998136545053677445105798159759997313058899999999999998536--6563067
Q gi|254780828|r 14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPN--QLLRSSV 91 (190)
Q Consensus 14 ~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~--~~~~~~~ 91 (190)
+|||+|||+++||||||+|+|++. .++.+++.+|||+|++|++++ ++|..+|.+.+.+.++.++++++. ...+++.
T Consensus 29 ~G~T~VGik~kdgVVlaa~k~~~s-~l~~~~~~~KI~~I~~~ig~a-~sGl~~D~~~lv~~~r~~a~~~~~~~~~~i~v~ 106 (212)
T cd03751 29 NSGTAIGIRCKDGVVLAVEKLVTS-KLYEPGSNKRIFNVDRHIGIA-VAGLLADGRHLVSRAREEAENYRDNYGTPIPVK 106 (212)
T ss_pred CCCCEEEEEECCEEEEEEECCCCC-CCCCCCCCCEEEEECCCEEEE-EEECCHHHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 269789998289899999625776-563566445489964882799-985757489999999999999999858998899
Q ss_pred HHHHHHHHHHH-------HHHCCCE--EEECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCHHH--
Q ss_conf 99999976112-------2201310--451378764699805863114132799606423457889852078999899--
Q gi|254780828|r 92 ELAKDWRMDKY-------LRNLEAM--ILIADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAEE-- 160 (190)
Q Consensus 92 ~~~~~~~~~~y-------~~~~~~~--~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa~e-- 160 (190)
.+++.+...++ .|++... +.+.|.++|.+|..||+|+..+..+.|+|||++.|+++||+.|+++|+.+|
T Consensus 107 ~la~~ls~~~q~~tq~~~~RPfGvslli~G~D~~gp~Ly~~dPsG~~~~~~a~AiG~~s~~a~~~LEk~y~~~ms~eeai 186 (212)
T cd03751 107 VLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDSDGPQLYMIEPSGVSYGYFGCAIGKGKQAAKTELEKLKFSELTCREAV 186 (212)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCEEEEECCCCCEECCEEEEECCCCHHHHHHHHHHCCCCCCHHHHH
T ss_conf 99999999999861445546673168999971897479999899887460499978997899999987554899999999
Q ss_pred -HHHHHHHHHHCCCEEECCCEEEEEE
Q ss_conf -9999999754011022595699999
Q gi|254780828|r 161 -IARKAMSIAADICVYTNHNIVLETL 185 (190)
Q Consensus 161 -la~~Al~~A~erDvyTgd~i~i~~i 185 (190)
++.+||..+.|-.--+-..+++..|
T Consensus 187 ~la~~al~~~~de~~~~~~~~e~~~i 212 (212)
T cd03751 187 KEAAKIIYIVHDEIKDKAFELELSWV 212 (212)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 99999999973104698723899839
No 33
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=99.94 E-value=4.3e-25 Score=176.75 Aligned_cols=171 Identities=15% Similarity=0.101 Sum_probs=141.9
Q ss_pred EECCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHC--CCCCCC
Q ss_conf 763717999997997999813654505367744510579815975999731305889999999999999853--665630
Q gi|254780828|r 12 KMHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYP--NQLLRS 89 (190)
Q Consensus 12 ~~~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~--~~~~~~ 89 (190)
+..|+|+|||+++||||||+|+|++ +.++.+++.+|||+|++|++++ ++|..+|.+.+.+.++.++++|+ ....++
T Consensus 26 ~~~G~T~VGIk~kdgVVla~ekr~~-~~l~~~~~~~ki~~I~~~ig~~-~sGl~~D~~~li~~~r~ea~~y~~~~~~~i~ 103 (215)
T cd03754 26 KNAGLTSVAVRGKDCAVVVTQKKVP-DKLIDPSTVTHLFRITDEIGCV-MTGMIADSRSQVQRARYEAAEFKYKYGYEMP 103 (215)
T ss_pred HCCCCCEEEEEECCEEEEEEECCCC-CCCCCCCCCCEEEECCCCEEEE-EEECCHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 6079857999959999999970577-6455865003078738987999-9706177999999999999999998099988
Q ss_pred HHHHHHHHHHH-------HHHHHCCCE--EEECCC-CCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCC----
Q ss_conf 67999999761-------122201310--451378-7646998058631141327996064234578898520789----
Q gi|254780828|r 90 SVELAKDWRMD-------KYLRNLEAM--ILIADK-TITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQ---- 155 (190)
Q Consensus 90 ~~~~~~~~~~~-------~y~~~~~~~--~~~~~~-~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~---- 155 (190)
+..+++.+... .+.|+|... +.+.|. .+|.+|..||+|+..+..+.|+|+|++.|.+.||+.|+++
T Consensus 104 v~~La~~ls~~~q~yTq~~~~RPfgvs~li~G~D~~~gp~Ly~~DPsG~~~~~~a~AiG~~~~~a~~~LEk~yk~d~~~~ 183 (215)
T cd03754 104 VDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGPQLYKCDPAGYFAGYKATAAGVKEQEATNFLEKKLKKKPDLI 183 (215)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999999717777047756899999848997189999999687614699989998899999999863177779
Q ss_pred CCHH---HHHHHHHHHHHCCCEEECCCEEEEEE
Q ss_conf 9989---99999999754011022595699999
Q gi|254780828|r 156 NSAE---EIARKAMSIAADICVYTNHNIVLETL 185 (190)
Q Consensus 156 ~sa~---ela~~Al~~A~erDvyTgd~i~i~~i 185 (190)
|+.+ ++|.+||+.+.++| .+.++|+|.++
T Consensus 184 ~s~eeai~lAi~aL~~~~~~~-~~~~~ieva~v 215 (215)
T cd03754 184 ESYEETVELAISCLQTVLSTD-FKATEIEVGVV 215 (215)
T ss_pred CCHHHHHHHHHHHHHHHHHCC-CCCCCEEEEEC
T ss_conf 999999999999999986056-89885799979
No 34
>KOG0185 consensus
Probab=99.89 E-value=4.6e-22 Score=157.81 Aligned_cols=174 Identities=19% Similarity=0.135 Sum_probs=147.1
Q ss_pred ECCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHC---CCCCCC
Q ss_conf 63717999997997999813654505367744510579815975999731305889999999999999853---665630
Q gi|254780828|r 13 MHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYP---NQLLRS 89 (190)
Q Consensus 13 ~~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~---~~~~~~ 89 (190)
..||++||+||++||+||||++.|+|++...+++++|++++|++++ |++|+.+|.|.+.+.+.....+.+ ......
T Consensus 39 vTGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntll-G~sGdisD~Q~i~r~L~~l~iedn~~~Dg~~l~ 117 (256)
T KOG0185 39 VTGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLL-GASGDISDFQYIQRVLEQLVIEDNRLDDGQSLG 117 (256)
T ss_pred ECCCEEEEEEECCCEEEEECCCCCCHHHHHHCCCEEEEEECCCEEE-ECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 1254589999438669984355330555633382346874681488-447667879999999999875133456522169
Q ss_pred HHHHHHHHHHHHHHHHCCCEE-------EECCC-CCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHC---CCCC-
Q ss_conf 679999997611222013104-------51378-76469980586311413279960642345788985207---8999-
Q gi|254780828|r 90 SVELAKDWRMDKYLRNLEAMI-------LIADK-TITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMS---TQNS- 157 (190)
Q Consensus 90 ~~~~~~~~~~~~y~~~~~~~~-------~~~~~-~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~---~~~s- 157 (190)
++.....+..-+|.+|....+ .+.++ ..|++.+.+..|...+++..|+|.|.+.|.++|+..|+ ++++
T Consensus 118 Pk~ih~yltrvlY~rRsKmnPlwntlvVgGv~~~g~~~lg~V~~~G~~Y~~~~vATGfg~hLa~P~lR~~~~~k~~~~s~ 197 (256)
T KOG0185 118 PKAIHSYLTRVLYARRSKMNPLWNTLVVGGVDNTGEPFLGYVDLLGVAYESPVVATGFGAHLALPLLRDEWEKKGEDLSR 197 (256)
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHEEEEEECCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 28999999999987640468253510675223789734788840042010726554468876518988753032106679
Q ss_pred --HHHHHHHHHHHHHCCCEEECCCEEEEEEEC
Q ss_conf --899999999975401102259569999941
Q gi|254780828|r 158 --AEEIARKAMSIAADICVYTNHNIVLETLKV 187 (190)
Q Consensus 158 --a~ela~~Al~~A~erDvyTgd~i~i~~i~~ 187 (190)
|++++++||+.--.||--.-++..+.+|+.
T Consensus 198 eeA~~li~~cMrVL~YRD~ra~n~fqva~v~~ 229 (256)
T KOG0185 198 EEAEALIEKCMRVLYYRDARASNEFQVATVDE 229 (256)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCEEEEEECC
T ss_conf 99999999998887202254345237999826
No 35
>KOG0176 consensus
Probab=99.82 E-value=6.1e-19 Score=138.26 Aligned_cols=173 Identities=17% Similarity=0.069 Sum_probs=139.4
Q ss_pred CCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCC--CCCCCHH
Q ss_conf 37179999979979998136545053677445105798159759997313058899999999999998536--6563067
Q gi|254780828|r 14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPN--QLLRSSV 91 (190)
Q Consensus 14 ~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~--~~~~~~~ 91 (190)
-|+|.+||+.++|||||+++|+|+ .+..+.+++||++|++|+.| +++|..+|..++.+..+.+++.++. ...+.+.
T Consensus 33 LGsTaIGv~TkEgVvL~vEKritS-pLm~p~sveKi~eid~HIgc-a~SGl~aDarTlve~arv~~qnh~f~Y~e~i~VE 110 (241)
T KOG0176 33 LGSTAIGVKTKEGVVLAVEKRITS-PLMEPSSVEKIVEIDDHIGC-AMSGLIADARTLVERARVETQNHWFTYGEPISVE 110 (241)
T ss_pred CCCCEEEEECCCEEEEEEECCCCC-CCCCCHHHHHHEEHHHCEEE-ECCCCCCCHHHHHHHHHHHHHHCEEECCCCCCHH
T ss_conf 377246664265179987000267-44585213320111300002-0023342168899998887642026628854399
Q ss_pred HHHHHHHHH------------HHHHHCCCEEE--ECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCC
Q ss_conf 999999761------------12220131045--1378764699805863114132799606423457889852078999
Q gi|254780828|r 92 ELAKDWRMD------------KYLRNLEAMIL--IADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNS 157 (190)
Q Consensus 92 ~~~~~~~~~------------~y~~~~~~~~~--~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~s 157 (190)
+..+..+.- .+.++|...++ +.|..+|.+|..||+|++..-+--|+||||+-|.+.|...|+++|+
T Consensus 111 s~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~~gpqL~h~dPSGtf~~~~AKAIGSgsEga~~~L~~e~~~~lt 190 (241)
T KOG0176 111 SLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDETGPQLYHLDPSGTFIRYKAKAIGSGSEGAESSLQEEYHKDLT 190 (241)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHCCCCCEEEEEEECCCCCCEEEEECCCCCEEEECCEECCCCCHHHHHHHHHHHHHCCC
T ss_conf 99999998876737784423452577632889864168886278767987569734501246655778899998754033
Q ss_pred HHHHHHHHH---HHHHCCCEEECCCEEEEEEECCC
Q ss_conf 899999999---97540110225956999994178
Q gi|254780828|r 158 AEEIARKAM---SIAADICVYTNHNIVLETLKVGD 189 (190)
Q Consensus 158 a~ela~~Al---~~A~erDvyTgd~i~i~~i~~~~ 189 (190)
.+|..+.++ +-.+|- -.+.+||.+.+++-++
T Consensus 191 L~ea~~~~L~iLkqVMee-Kl~~~Nvev~~vt~e~ 224 (241)
T KOG0176 191 LKEAEKIVLKILKQVMEE-KLNSNNVEVAVVTPEG 224 (241)
T ss_pred HHHHHHHHHHHHHHHHHH-HCCCCCEEEEEECCCC
T ss_conf 779999999999999997-4485563799971468
No 36
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.76 E-value=1.7e-16 Score=122.97 Aligned_cols=150 Identities=27% Similarity=0.249 Sum_probs=119.8
Q ss_pred EEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCC--CHHHH
Q ss_conf 1799999799799981365450536774451057981597599973130588999999999999985366563--06799
Q gi|254780828|r 16 TTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPNQLLR--SSVEL 93 (190)
Q Consensus 16 TTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~~~~~--~~~~~ 93 (190)
||++|++++|||++|+|+|.+.+..+..++.+|++++++++++ +.+|...|++.+.+.++.++.+++..... +....
T Consensus 1 ~t~i~i~~~~~vvla~d~~~~~~~~~~~~~~~k~~~~~~~~~~-~~~g~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAW-GLAGLAADAQTLVRRLREALQLYRLRYGEPISVVAL 79 (164)
T ss_pred CCEEEEEECCEEEEEECCCCCCCCEECCCCCCEEEEECCCEEE-EECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 9599999799999998687676888326875528994797899-974566079999999999999999998899989999
Q ss_pred HHHHHHHHHHH----HCCC--EEEECCCCCCEEEEECCCCCEECC-CEEEEECCHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 99997611222----0131--045137876469980586311413-2799606423457889852078999899999999
Q gi|254780828|r 94 AKDWRMDKYLR----NLEA--MILIADKTITLVITGMGDVLEPEN-GVMAIGSGGSYALSAARALMSTQNSAEEIARKAM 166 (190)
Q Consensus 94 ~~~~~~~~y~~----~~~~--~~~~~~~~~~~~~~~d~~g~~~~~-~~~a~GSGs~~A~g~Le~~y~~~~sa~ela~~Al 166 (190)
+.......+.. ++.. .+.+.+..++.++..++.|...+. .+.++|+|+.++.++|+..|+++|+.+|..+.++
T Consensus 80 a~~~~~~~~~~~~~~p~~~~~iv~g~~~~~~~l~~id~~g~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 159 (164)
T cd01901 80 AKELAKLLQVYTQGRPFGVNLIVAGVDEGGGNLYYIDPSGPVIENPGAVATGSRSQRAKSLLEKLYKPDMTLEEAVELAL 159 (164)
T ss_pred HHHHHHHHHHHCCCCCCEEEEEEEEECCCCCEEEEECCCCCEEECCCEEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 99999999984487872489999997199988999968986675498678667509999999965659869999999999
No 37
>KOG0177 consensus
Probab=99.75 E-value=2.9e-17 Score=127.74 Aligned_cols=171 Identities=17% Similarity=0.155 Sum_probs=138.6
Q ss_pred EEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 17999997997999813654505367744510579815975999731305889999999999999853665630679999
Q gi|254780828|r 16 TTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPNQLLRSSVELAK 95 (190)
Q Consensus 16 TTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (190)
-|++||+++|+|++|+||-++.+-++...+.+|++++++++.++ ..|.++|+..+..+.+..+++|+.+++..+++.+.
T Consensus 2 e~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~-~~Ge~GDt~qF~eyi~~Ni~LY~irnGyeLSp~~a 80 (200)
T KOG0177 2 ETLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMA-TVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAA 80 (200)
T ss_pred CEEEEEECCCEEEEEECCHHHCCEEEECCCCCCEEEECCCEEEE-EECCCCCEEHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 34787504887999604043344289736644026724310455-30588651079999985305765426876788999
Q ss_pred HHHHH----HHHH---HCCC--EEEECC-CCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCHHH---HH
Q ss_conf 99761----1222---0131--045137-8764699805863114132799606423457889852078999899---99
Q gi|254780828|r 96 DWRMD----KYLR---NLEA--MILIAD-KTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAEE---IA 162 (190)
Q Consensus 96 ~~~~~----~y~~---~~~~--~~~~~~-~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa~e---la 162 (190)
+...- -+++ ++.. .+.+.| ..+|.+++.|+.+..-..+|.+.|-|+.|.+++||..|+|+||.+| |.
T Consensus 81 ahFtR~~La~~LRsr~~yqV~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~pdmt~eea~~lm 160 (200)
T KOG0177 81 AHFTRRELAESLRSRTPYQVNILVAGYDPEEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYYKPDMTIEEALDLM 160 (200)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCEEEEHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 99999999999722897158999852578779733665233332557753344045221787776608987899999999
Q ss_pred HHHHHHHHCCCEEECCCEEEEEEEC
Q ss_conf 9999975401102259569999941
Q gi|254780828|r 163 RKAMSIAADICVYTNHNIVLETLKV 187 (190)
Q Consensus 163 ~~Al~~A~erDvyTgd~i~i~~i~~ 187 (190)
+||+.-.-+|=+.---|..+.+++-
T Consensus 161 kKCv~El~kRlvin~~~f~v~IVdk 185 (200)
T KOG0177 161 KKCVLELKKRLVINLPGFIVKIVDK 185 (200)
T ss_pred HHHHHHHHHHCCCCCCCCEEEEECC
T ss_conf 9999999975102778848999847
No 38
>KOG0178 consensus
Probab=99.64 E-value=9.9e-15 Score=111.93 Aligned_cols=175 Identities=18% Similarity=0.077 Sum_probs=141.7
Q ss_pred CCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHH--HCCCCCCCHH
Q ss_conf 37179999979979998136545053677445105798159759997313058899999999999998--5366563067
Q gi|254780828|r 14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQ--YPNQLLRSSV 91 (190)
Q Consensus 14 ~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~--~~~~~~~~~~ 91 (190)
|-+|++|+...||||||+++|.+.--+-.+-.++||++++|+++|+ .+|..+|...+.+.++...+. .......+..
T Consensus 30 ~aGt~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~-vaGlt~DAnvL~n~aRi~AQ~yl~~y~e~iP~e 108 (249)
T KOG0178 30 HAGTCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACA-VAGLTSDANVLKNYARIIAQRYLFRYGEEIPCE 108 (249)
T ss_pred HHCCEEEEEECCCEEEEEECCCCHHHHHCCCCHHHHHHCCCCEEEE-EECCCCCHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 2064257874385699850444156663266477762047744788-723554078999999999999999717777499
Q ss_pred HHHHHHH-------HHHHHHHCCCEEEECCCC---CCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCC----
Q ss_conf 9999997-------611222013104513787---64699805863114132799606423457889852078999----
Q gi|254780828|r 92 ELAKDWR-------MDKYLRNLEAMILIADKT---ITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNS---- 157 (190)
Q Consensus 92 ~~~~~~~-------~~~y~~~~~~~~~~~~~~---~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~s---- 157 (190)
.+.+.++ .+.-.++|...++...++ +..+|.+||+|.+-.++-.++|-.+..|+..|...|+++..
T Consensus 109 qLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~~gyqLy~SdPSGny~gWka~ciG~N~~Aa~s~Lkqdykdd~~~~~e 188 (249)
T KOG0178 109 QLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDRYGYQLYQSDPSGNYGGWKATCIGANSGAAQSMLKQDYKDDENDLEE 188 (249)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEEECEECCCCEEEEECCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCHHH
T ss_conf 99999877777776506867774155550110475537874289988565100132466599999997550232101899
Q ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEECCC
Q ss_conf 89999999997540110225956999994178
Q gi|254780828|r 158 AEEIARKAMSIAADICVYTNHNIVLETLKVGD 189 (190)
Q Consensus 158 a~ela~~Al~~A~erDvyTgd~i~i~~i~~~~ 189 (190)
|.+++.|.|.-+.+...-|-+.+++++|..+.
T Consensus 189 A~~laikvL~kt~d~~~lt~eklEia~~~k~~ 220 (249)
T KOG0178 189 AKALAIKVLSKTLDSGSLTAEKLEIATITKDC 220 (249)
T ss_pred HHHHHHHHHHHHCCCCCCCHHHEEEEEEEECC
T ss_conf 99999999876415677783145788999628
No 39
>KOG0184 consensus
Probab=99.59 E-value=5e-14 Score=107.52 Aligned_cols=153 Identities=16% Similarity=0.122 Sum_probs=122.8
Q ss_pred CCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 37179999979979998136545053677445105798159759997313058899999999999998536656306799
Q gi|254780828|r 14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPNQLLRSSVEL 93 (190)
Q Consensus 14 ~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (190)
+++|.+||+++||||+++++..++ .+......+|||.+++|+.++ .+|...|.+++....+.+...++..-..+++..
T Consensus 33 n~~T~IGIk~kdGVVl~vEKli~S-kLy~p~sn~ri~~V~r~iG~a-vaGl~~Dg~~l~~~ar~ea~~~~~~y~~piP~~ 110 (254)
T KOG0184 33 NSGTCIGIKCKDGVVLAVEKLITS-KLYEPGSNERIFSVDRHIGMA-VAGLIPDGRHLVNRARDEAASWRKNYGDPIPGK 110 (254)
T ss_pred CCCCEEEEECCCEEEEEEEEEECC-CCCCCCCCCCEEEECCCCCEE-EECCCCCHHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 378579886277089997211014-200368887347631630079-852056457999999999988998638998668
Q ss_pred HHHHHHHHH---------HHHCCC--EEEECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 999976112---------220131--045137876469980586311413279960642345788985207899989999
Q gi|254780828|r 94 AKDWRMDKY---------LRNLEA--MILIADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAEEIA 162 (190)
Q Consensus 94 ~~~~~~~~y---------~~~~~~--~~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa~ela 162 (190)
.-+.+...| .++|.. ++...+.++|.+|-.+|+|+...-.-+|+|-|.+.|---||++--++|+.+|++
T Consensus 111 ~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~~g~~LymiepSG~~~~Y~~aaiGKgrq~aKtElEKL~~~~mt~~e~V 190 (254)
T KOG0184 111 HLADRVADYVHAFTLYSSVRPFGASTILGSYDDEGPQLYMIEPSGSSYGYKGAAIGKGRQAAKTELEKLKIDEMTCKELV 190 (254)
T ss_pred HHHHHHHHHHHEEEHHHCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf 99999976641123010015554337888880898459997578873303356505105788878886154525199999
Q ss_pred HHHHHH
Q ss_conf 999997
Q gi|254780828|r 163 RKAMSI 168 (190)
Q Consensus 163 ~~Al~~ 168 (190)
++|-++
T Consensus 191 keaakI 196 (254)
T KOG0184 191 KEAAKI 196 (254)
T ss_pred HHHHHE
T ss_conf 987724
No 40
>KOG0183 consensus
Probab=99.55 E-value=9.7e-14 Score=105.74 Aligned_cols=175 Identities=16% Similarity=0.129 Sum_probs=131.4
Q ss_pred CCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 37179999979979998136545053677445105798159759997313058899999999999998536656306799
Q gi|254780828|r 14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPNQLLRSSVEL 93 (190)
Q Consensus 14 ~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (190)
+|+|.||++++++|||+.+++... .+-..|..+||..++||+.+ .++|.-+|...+....+.+|+.|+...+.++...
T Consensus 29 kGstaVgvrg~~~vvlgvEkkSv~-~Lq~~r~~rkI~~ld~hV~m-afaGl~aDArilinrArvecqShrlt~edpvtve 106 (249)
T KOG0183 29 KGSTAVGVRGNNCVVLGVEKKSVP-KLQDERTVRKISMLDDHVVM-AFAGLTADARILINRARVECQSHRLTLEDPVTVE 106 (249)
T ss_pred CCCEEEEECCCCEEEEEEEECCHH-HHHHHHHHHHHEEECCEEEE-EECCCCCCCEEEHHHHHHHHHHHHCCCCCCCHHH
T ss_conf 276379860685599998405526-65211103221010451467-7337886400120067676565203658970799
Q ss_pred --HHHHH-------HHHHHHHCCC-EEE-ECCC-CCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCC--CHH
Q ss_conf --99997-------6112220131-045-1378-76469980586311413279960642345788985207899--989
Q gi|254780828|r 94 --AKDWR-------MDKYLRNLEA-MIL-IADK-TITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQN--SAE 159 (190)
Q Consensus 94 --~~~~~-------~~~y~~~~~~-~~~-~~~~-~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~--sa~ 159 (190)
++.+. .+...++|.. .++ +.|. +.|.+|..+|+|.+.++...|+|-+|.-...+||+.|+++- +..
T Consensus 107 yitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g~p~lyqtePsG~f~ewka~aiGr~sk~VrEflEK~y~e~~~~~~~ 186 (249)
T KOG0183 107 YITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDGTPRLYQTEPSGIFSEWKANAIGRSSKTVREFLEKNYKEEAIATEG 186 (249)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCC
T ss_conf 99999998666630058826652157887537999803676479864155512553645087999998721435556620
Q ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEECCCC
Q ss_conf 9999999975401102259569999941789
Q gi|254780828|r 160 EIARKAMSIAADICVYTNHNIVLETLKVGDE 190 (190)
Q Consensus 160 ela~~Al~~A~erDvyTgd~i~i~~i~~~~~ 190 (190)
+.++-++++-.|-----+.||++.+++.++|
T Consensus 187 ~~ikL~ir~LleVvqs~~~nie~aVm~~~~~ 217 (249)
T KOG0183 187 ETIKLAIRALLEVVQSGGKNIEVAVMKRRKD 217 (249)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEEEEECCCC
T ss_conf 0799999999998605887068999806886
No 41
>KOG0863 consensus
Probab=99.50 E-value=1.1e-12 Score=99.07 Aligned_cols=172 Identities=16% Similarity=0.100 Sum_probs=133.4
Q ss_pred CCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCH--H
Q ss_conf 37179999979979998136545053677445105798159759997313058899999999999998536656306--7
Q gi|254780828|r 14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPNQLLRSS--V 91 (190)
Q Consensus 14 ~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~~~~~~~--~ 91 (190)
-|+++||++-+.-+||.|=+|..+. ++...+||++|++|+.+ .++|..+|...+.++++.++-.++.....++ .
T Consensus 31 qGsatVGLks~thaVLvAl~r~~se---Lss~QkKi~~iD~h~g~-siAGLt~Darvl~~Ylr~ec~~~~~~~~r~~pv~ 106 (264)
T KOG0863 31 QGSATVGLKSRTHAVLVALKRAQSE---LSSHQKKIFKIDDHIGI-SIAGLTADARVLSRYLRQECLNSRFIYGRPLPVL 106 (264)
T ss_pred CCCCEEEECCCCEEEEEEECCCHHH---HHHHHHEEEECCCCCCE-EEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 3560674225636886532113667---77764115760354524-6753373369999999998743523148854199
Q ss_pred HHHHHHH-----HH-HHHH-HCCCE--EEECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHC--CCCCHHH
Q ss_conf 9999997-----61-1222-01310--45137876469980586311413279960642345788985207--8999899
Q gi|254780828|r 92 ELAKDWR-----MD-KYLR-NLEAM--ILIADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMS--TQNSAEE 160 (190)
Q Consensus 92 ~~~~~~~-----~~-~y~~-~~~~~--~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~--~~~sa~e 160 (190)
.+...+. +. .|-+ ++... +.+.|..+|+++...|++...+-.-.++||-|+-|.-+||...+ ++++.+|
T Consensus 107 rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe~G~hl~e~~Psg~v~e~~g~sIGsRSQsARTyLEr~~e~f~d~~~eE 186 (264)
T KOG0863 107 RLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDESGPHLYEFCPSGNVFECKGMSIGSRSQSARTYLERNLEEFEDSSPEE 186 (264)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCHHH
T ss_conf 99999998876556550786654058997405788606887698648987500402210356899999888775089999
Q ss_pred HHHHHHHHH---HC-CCEEECCCEEEEEEECCC
Q ss_conf 999999975---40-110225956999994178
Q gi|254780828|r 161 IARKAMSIA---AD-ICVYTNHNIVLETLKVGD 189 (190)
Q Consensus 161 la~~Al~~A---~e-rDvyTgd~i~i~~i~~~~ 189 (190)
|++.+|.+- -. -+--|+.|++|+++.-++
T Consensus 187 LI~~gi~Alr~tlp~de~lt~~nvsI~Ivgkd~ 219 (264)
T KOG0863 187 LIKHGIMALRETLPEDEDLTGENVSIAIVGKDE 219 (264)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCC
T ss_conf 999999999742776312345503899973797
No 42
>KOG0181 consensus
Probab=99.45 E-value=5.8e-13 Score=100.89 Aligned_cols=170 Identities=15% Similarity=0.075 Sum_probs=130.8
Q ss_pred CCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCC--CCCCC--
Q ss_conf 37179999979979998136545053677445105798159759997313058899999999999998536--65630--
Q gi|254780828|r 14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPN--QLLRS-- 89 (190)
Q Consensus 14 ~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~--~~~~~-- 89 (190)
+|-|.||++-.||||||.++..+. .++...+++||++|+++|.+. .+|.-.|+..+++.-+...++|.. ...++
T Consensus 31 ~G~~SvGi~A~nGvVlatekk~~s-~L~~~~sv~KV~~i~~~IG~v-YSGmgpD~RvlV~~~rkiAe~Yy~vY~e~~pt~ 108 (233)
T KOG0181 31 NGQTSVGIKAANGVVLATEKKDVS-PLVDEESVRKVEKITPHIGCV-YSGMGPDYRVLVHKSRKIAEQYYRVYGEPIPTT 108 (233)
T ss_pred CCCCCEEEEECCCEEEEECCCCCC-CCCHHHHHHHHHHCCCCCCEE-EECCCCCEEEHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 798730056048469986367898-412044455576306874548-726899665212678999999999846899889
Q ss_pred -----HHHHHHHHHHHHHHHHCCCEEE--ECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf -----6799999976112220131045--137876469980586311413279960642345788985207899989999
Q gi|254780828|r 90 -----SVELAKDWRMDKYLRNLEAMIL--IADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAEEIA 162 (190)
Q Consensus 90 -----~~~~~~~~~~~~y~~~~~~~~~--~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa~ela 162 (190)
+++..+....+.-.++|...++ +++...|.+|..||+|++..++..|+|-+..-|--.||+.|+++|..++-.
T Consensus 109 qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~~~p~LyQvdPSGsyf~wkatA~Gkn~v~aktFlEkR~~edleldd~i 188 (233)
T KOG0181 109 QLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDEGGPLLYQVDPSGSYFAWKATAMGKNYVNAKTFLEKRYNEDLELDDAI 188 (233)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEEEECCCCCEEEHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHH
T ss_conf 99999999999986338866562378986537982059987786563111344306674037889998714453330489
Q ss_pred HHHHHHH---HCCCEEECCCEEEEEEE
Q ss_conf 9999975---40110225956999994
Q gi|254780828|r 163 RKAMSIA---ADICVYTNHNIVLETLK 186 (190)
Q Consensus 163 ~~Al~~A---~erDvyTgd~i~i~~i~ 186 (190)
..|+.+- .|-.+ |.|||+|.++.
T Consensus 189 htailtlkE~fege~-~~~nieigv~~ 214 (233)
T KOG0181 189 HTAILTLKESFEGEM-TAKNIEIGVCG 214 (233)
T ss_pred HHHHHHHHHHHCCCC-CCCCEEEEEEC
T ss_conf 999998888745652-35753799943
No 43
>KOG0182 consensus
Probab=99.02 E-value=3.2e-08 Score=71.21 Aligned_cols=178 Identities=17% Similarity=0.090 Sum_probs=125.1
Q ss_pred CCEEECCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHH--CCCC
Q ss_conf 81776371799999799799981365450536774451057981597599973130588999999999999985--3665
Q gi|254780828|r 9 YAVKMHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQY--PNQL 86 (190)
Q Consensus 9 ~~~~~~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~--~~~~ 86 (190)
.++.-.|-|.||++++|++|+..-+++.. .++.+..+.-+|+|+.+++++ +.|.-+|........+.+..+. ...-
T Consensus 30 kAin~~gltsVavrgkDcavvvsqKkvpD-KLld~~tvt~~f~itk~ig~v-~tG~~aDar~~v~rar~eAa~~~yk~Gy 107 (246)
T KOG0182 30 KAINQAGLTSVAVRGKDCAVVVTQKKVPD-KLLDSSTVTHLFRITKKIGCV-ITGMIADARSQVQRARYEAAEFRYKYGY 107 (246)
T ss_pred HHHHCCCCCEEEECCCCEEEEEECCCCCC-CCCCCCCCEEEEEEECCCEEE-EECCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 77522797158873786699997354871-003644222789840541179-9527755789999999898752564288
Q ss_pred CCCHHHHHHHHH-------HHHHHHH--CCCEEEECCCC-CCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCC-
Q ss_conf 630679999997-------6112220--13104513787-646998058631141327996064234578898520789-
Q gi|254780828|r 87 LRSSVELAKDWR-------MDKYLRN--LEAMILIADKT-ITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQ- 155 (190)
Q Consensus 87 ~~~~~~~~~~~~-------~~~y~~~--~~~~~~~~~~~-~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~- 155 (190)
+++.-.+++.+- ..-+.++ +-..+++.|.+ +|.+|..|+.|.+.--.-.|.|--..-+-..||+.||++
T Consensus 108 emp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~E~gP~vYk~DpAGyy~g~kAtaaG~Kq~e~tsfLEKk~Kk~~ 187 (246)
T KOG0182 108 EMPCDILAKRMADKSQVYTQNAAMRPLGVAATLIGVDEERGPSVYKTDPAGYYYGFKATAAGVKQQEATSFLEKKYKKDI 187 (246)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEECCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCC
T ss_conf 78788999988667888765564256530588987602458715766575230141132046230067789998632463
Q ss_pred -CCHHH---HHHHHHHHHHCCCEEECCCEEEEEEECCC
Q ss_conf -99899---99999997540110225956999994178
Q gi|254780828|r 156 -NSAEE---IARKAMSIAADICVYTNHNIVLETLKVGD 189 (190)
Q Consensus 156 -~sa~e---la~~Al~~A~erDvyTgd~i~i~~i~~~~ 189 (190)
++-+| ++..||..+...|.-. ..++|-+++.++
T Consensus 188 ~~t~~e~ve~ai~al~~sl~~Dfk~-se~EVgvv~~~~ 224 (246)
T KOG0182 188 DLTFEETVETAISALQSSLGIDFKS-SELEVGVVTVDN 224 (246)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCC-CCEEEEEEECCC
T ss_conf 2018899999999999986013577-624899998478
No 44
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=98.23 E-value=4.9e-05 Score=51.31 Aligned_cols=165 Identities=21% Similarity=0.246 Sum_probs=103.3
Q ss_pred EEEEEEEECCEEEEEECCCCCCC-CEEEECCCEEEEEE---CCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCC---
Q ss_conf 17999997997999813654505-36774451057981---597599973130588999999999999985366563---
Q gi|254780828|r 16 TTILTVRKDGVVVIAGDGQVSLG-QTVMKANARKVRRL---GKGNIIAGFAGSSADAFTLLERLEKKLEQYPNQLLR--- 88 (190)
Q Consensus 16 TTivgi~~~dgVviAaDtR~S~G-~~v~sr~~~KI~~i---~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~~~~~--- 88 (190)
|=+|||+-++|.|+++|||+..| ..|.+ .+|+|.. ++..++.-.+|--+..|.....++..++........
T Consensus 1 TYCvgi~l~~GLVf~SDsRTNAGvD~ist--~rKm~~~~~~g~R~ivlltaGNLattQ~Vi~~l~~~~~~~~~~~l~~~~ 78 (236)
T cd03765 1 TYCLGIKLDAGLVFASDSRTNAGVDNIST--YRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAP 78 (236)
T ss_pred CEEEEEEECCCEEEEECCCCCCCCCCHHH--CEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 95799991688699973774457541200--2214885379978999976786088999999999985158888834456
Q ss_pred CHHHHHHHH----HHHH-----HH----HHCCCE-EEE--CCCCCCEEEEECCCCCE----ECCCEEEEECCHHHHHHHH
Q ss_conf 067999999----7611-----22----201310-451--37876469980586311----4132799606423457889
Q gi|254780828|r 89 SSVELAKDW----RMDK-----YL----RNLEAM-ILI--ADKTITLVITGMGDVLE----PENGVMAIGSGGSYALSAA 148 (190)
Q Consensus 89 ~~~~~~~~~----~~~~-----y~----~~~~~~-~~~--~~~~~~~~~~~d~~g~~----~~~~~~a~GSGs~~A~g~L 148 (190)
.+...+... +... .. ..|... +++ ...+.|.+|-.+|.|-+ ++.||.-+|= +-|=-|+|
T Consensus 79 ~m~~aA~~vG~~~r~v~~~~~~~l~~~~~~f~as~IlGGQI~g~~p~LflIYpeGNfIeas~dtPf~QIGE-tKYGKPIL 157 (236)
T cd03765 79 TMFDAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKGEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGKPIL 157 (236)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCEEEEEECCCCEEECCCCCCEEEECC-CCCCCCEE
T ss_conf 89999999999999999974566764577624799997316799843899936986186069996588546-56798538
Q ss_pred HHHHCCCCCHHHHHHHHHHH---H----------HCCCEEECCCEEEE
Q ss_conf 85207899989999999997---5----------40110225956999
Q gi|254780828|r 149 RALMSTQNSAEEIARKAMSI---A----------ADICVYTNHNIVLE 183 (190)
Q Consensus 149 e~~y~~~~sa~ela~~Al~~---A----------~erDvyTgd~i~i~ 183 (190)
|..++++++.++.+|-||.+ - .|.-+|..|...+.
T Consensus 158 DR~i~~~~sl~~A~K~aLvSfDST~rSNlSVG~PiDl~vY~~dsl~~~ 205 (236)
T cd03765 158 DRVITPDTSLEDAAKCALVSMDSTMRSNLSVGPPLDLLVYERDSLQVG 205 (236)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCC
T ss_conf 853579999999999877712555542267689826999977975413
No 45
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.015 Score=35.69 Aligned_cols=150 Identities=16% Similarity=0.134 Sum_probs=92.9
Q ss_pred EEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEE---CCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 1799999799799981365450536774451057981---5975999731305889999999999999853665630679
Q gi|254780828|r 16 TTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRL---GKGNIIAGFAGSSADAFTLLERLEKKLEQYPNQLLRSSVE 92 (190)
Q Consensus 16 TTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i---~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (190)
|-.||++-+.|.|+++|+|...|---. ...+|.|.. ++.+.+...+|--+..|.....+....+......-..+++
T Consensus 2 TYCv~l~l~~GlVf~sDsRTNAGvD~i-stfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~n~~s 80 (255)
T COG3484 2 TYCVGLILDFGLVFGSDSRTNAGVDYI-STFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDERIQRDDGDSLLNIPS 80 (255)
T ss_pred CEEEEEEECCCEEEECCCCCCCCCHHH-HHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHCCHH
T ss_conf 268999841653883156645570678-8877775105888659999705750889999999998863144055534514
Q ss_pred HHHHH------HHHHHHH----------H-CCCEEEE--CCCCCCEEEEECCCCCE----ECCCEEEEECCHHHHHHHHH
Q ss_conf 99999------7611222----------0-1310451--37876469980586311----41327996064234578898
Q gi|254780828|r 93 LAKDW------RMDKYLR----------N-LEAMILI--ADKTITLVITGMGDVLE----PENGVMAIGSGGSYALSAAR 149 (190)
Q Consensus 93 ~~~~~------~~~~y~~----------~-~~~~~~~--~~~~~~~~~~~d~~g~~----~~~~~~a~GSGs~~A~g~Le 149 (190)
+.... -...+-+ . +..++++ +..+.|.+|..++.|.+ ++.+|.-+|- +-|--++++
T Consensus 81 m~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~pp~Ly~IYpqGNFIqaT~etpf~QiGE-tKYGKPild 159 (255)
T COG3484 81 MYEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGEPPRLYLIYPQGNFIQATPETPFLQIGE-TKYGKPILD 159 (255)
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHCCCCCEEEEEEECCEECCCCCEEEEECCCCCEEECCCCCCEEECCC-CCCCCHHHH
T ss_conf 9899999988899998623710111686436889970332699960489715787245589985167143-125860100
Q ss_pred HHHCCCCCHHHHHHHHHH
Q ss_conf 520789998999999999
Q gi|254780828|r 150 ALMSTQNSAEEIARKAMS 167 (190)
Q Consensus 150 ~~y~~~~sa~ela~~Al~ 167 (190)
..+.-++..+|.+|-|+.
T Consensus 160 R~i~~~~pLeea~kcaLv 177 (255)
T COG3484 160 RTITYDTPLEEAAKCALV 177 (255)
T ss_pred HHHHCCCCHHHHHHHEEE
T ss_conf 011136878997410077
No 46
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=86.80 E-value=2.5 Score=21.91 Aligned_cols=36 Identities=25% Similarity=0.272 Sum_probs=28.1
Q ss_pred EEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 981597599973130588999999999999985366
Q gi|254780828|r 50 RRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPNQ 85 (190)
Q Consensus 50 ~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~~ 85 (190)
++-+.++++||-+|.++|.|++..-+.-+.+..+..
T Consensus 38 l~~G~Kvl~cGNGgSaadAqHfaaEl~gRf~~eR~~ 73 (176)
T COG0279 38 LLNGNKVLACGNGGSAADAQHFAAELTGRFEKERPS 73 (176)
T ss_pred HHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 976997999769852451899999986078752789
No 47
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit; InterPro: IPR006275 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents glutamine-dependent CPSase (6.3.5.5 from EC) from prokaryotes and eukaryotes (CPSase II). ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=77.07 E-value=1 Score=24.36 Aligned_cols=45 Identities=27% Similarity=0.349 Sum_probs=29.7
Q ss_pred CCCEEEEECCHHHHHHHHHHHHCCCCCHHHHHHHHHHHH--HC------------------CC-----------------
Q ss_conf 132799606423457889852078999899999999975--40------------------11-----------------
Q gi|254780828|r 131 ENGVMAIGSGGSYALSAARALMSTQNSAEEIARKAMSIA--AD------------------IC----------------- 173 (190)
Q Consensus 131 ~~~~~a~GSGs~~A~g~Le~~y~~~~sa~ela~~Al~~A--~e------------------rD----------------- 173 (190)
.-.|+-.|.||-.|.- .-+.++++++||+.. -+ ||
T Consensus 168 RpAftLGG~GgGiA~n--------~eEL~~~~~~aL~~SpI~qvL~EkSl~GWKE~EYEVmRD~~dNCItVCNmEN~DPm 239 (1089)
T TIGR01369 168 RPAFTLGGTGGGIASN--------EEELKEIVERALSASPINQVLVEKSLAGWKEIEYEVMRDSKDNCITVCNMENFDPM 239 (1089)
T ss_pred CCCHHCCCCCCCEECC--------HHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEEEEEECCCCEEEEECCCCCCCC
T ss_conf 1003238899852257--------78999999988630888557501100331788988986268788999745476898
Q ss_pred -EEECCCEEEE
Q ss_conf -0225956999
Q gi|254780828|r 174 -VYTNHNIVLE 183 (190)
Q Consensus 174 -vyTgd~i~i~ 183 (190)
|||||+|+|+
T Consensus 240 GVHTGdSIVVA 250 (1089)
T TIGR01369 240 GVHTGDSIVVA 250 (1089)
T ss_pred CEEECCCEEEC
T ss_conf 45707833650
No 48
>TIGR00441 gmhA phosphoheptose isomerase; InterPro: IPR004515 Phosphoheptose isomerase is involved in lipopolysaccharide biosynthesis, and more specifically in the synthesis of glyceromannoheptose 7-phosphate. It may also have a role in virulence in Haemophilus ducreyi.; GO: 0008968 phosphoheptose isomerase activity, 0009244 lipopolysaccharide core region biosynthetic process, 0005737 cytoplasm.
Probab=75.28 E-value=3.6 Score=20.89 Aligned_cols=42 Identities=24% Similarity=0.201 Sum_probs=31.1
Q ss_pred EEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCC-CCCHH
Q ss_conf 9815975999731305889999999999999853665-63067
Q gi|254780828|r 50 RRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPNQL-LRSSV 91 (190)
Q Consensus 50 ~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~~~-~~~~~ 91 (190)
|+-++++.+||-+|+++|.|++..-+.-+.++.+... -++++
T Consensus 36 l~~GgK~L~CGNGgSaadAqHFAaEl~GRf~~eR~glPAIAL~ 78 (186)
T TIGR00441 36 LKNGGKILICGNGGSAADAQHFAAELVGRFKLERPGLPAIALN 78 (186)
T ss_pred HHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHH
T ss_conf 9808908985685043358889998716400026776467776
No 49
>pfam09894 DUF2121 Uncharacterized protein conserved in archaea (DUF2121). This domain, found in various hypothetical archaeal proteins, has no known function.
Probab=73.43 E-value=2.7 Score=21.68 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=18.1
Q ss_pred EEEEEEEECCEEEEEECCCC
Q ss_conf 17999997997999813654
Q gi|254780828|r 16 TTILTVRKDGVVVIAGDGQV 35 (190)
Q Consensus 16 TTivgi~~~dgVviAaDtR~ 35 (190)
|-|+|.-+++|+|||+|+|-
T Consensus 2 SlII~y~GknGaViaGDkR~ 21 (194)
T pfam09894 2 SLVIAYYGKNGAVIAGDKRN 21 (194)
T ss_pred EEEEEEECCCCEEEECCHHH
T ss_conf 39999964887088534233
No 50
>KOG3361 consensus
Probab=62.24 E-value=12 Score=17.61 Aligned_cols=40 Identities=13% Similarity=0.072 Sum_probs=32.9
Q ss_pred EEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCHH
Q ss_conf 9980586311413279960642345788985207899989
Q gi|254780828|r 120 VITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAE 159 (190)
Q Consensus 120 ~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa~ 159 (190)
-+..+..|..++..|-.-|-||..|-..+-..|-..++.+
T Consensus 70 qIkvd~~g~I~dakFKTFGCGSAIASSS~aTewvkgkt~d 109 (157)
T KOG3361 70 QIKVDDSGVIEDAKFKTFGCGSAIASSSLATEWVKGKTLD 109 (157)
T ss_pred EEEECCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCHH
T ss_conf 8897799828876652115634766668899998356288
No 51
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=57.41 E-value=14 Score=17.09 Aligned_cols=29 Identities=21% Similarity=0.264 Sum_probs=22.0
Q ss_pred ECCCEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 15975999731305889999999999999
Q gi|254780828|r 52 LGKGNIIAGFAGSSADAFTLLERLEKKLE 80 (190)
Q Consensus 52 i~d~~~~~g~ag~a~d~~~~~~~~~~~~~ 80 (190)
=+.++++||-+|.+++.+++...+..+.+
T Consensus 40 ~g~ki~~cGNGGSaa~A~Hfa~el~~~f~ 68 (196)
T PRK10886 40 NGNKILCCGNGTSAANAQHFAASMINRFE 68 (196)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHCCCC
T ss_conf 79979998684748899999999964655
No 52
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=52.60 E-value=11 Score=17.93 Aligned_cols=20 Identities=30% Similarity=0.343 Sum_probs=18.0
Q ss_pred EEEEEEEECCEEEEEECCCC
Q ss_conf 17999997997999813654
Q gi|254780828|r 16 TTILTVRKDGVVVIAGDGQV 35 (190)
Q Consensus 16 TTivgi~~~dgVviAaDtR~ 35 (190)
|-+++..+.+|.|+|+|+|-
T Consensus 2 tLviay~gknGaviaGDrR~ 21 (293)
T COG4079 2 TLVIAYIGKNGAVIAGDRRE 21 (293)
T ss_pred EEEEEEECCCCCEEECCCEE
T ss_conf 49999954788187244127
No 53
>PRK13938 phosphoheptose isomerase; Provisional
Probab=48.97 E-value=20 Score=16.25 Aligned_cols=31 Identities=32% Similarity=0.379 Sum_probs=23.3
Q ss_pred EEECCCEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 9815975999731305889999999999999
Q gi|254780828|r 50 RRLGKGNIIAGFAGSSADAFTLLERLEKKLE 80 (190)
Q Consensus 50 ~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~ 80 (190)
++=+.++++||-+|.+++.+++...+..+..
T Consensus 42 ~~~g~kI~~cGNGGSaa~A~Hfa~el~~~~~ 72 (196)
T PRK13938 42 YRAGARVFMCGNGGSAADAQHFAAELTGHLI 72 (196)
T ss_pred HHCCCEEEEEECCHHHHHHHHHHHHHHHHCC
T ss_conf 9879989999686889999999999863335
No 54
>TIGR00328 flhB flagellar biosynthetic protein FlhB; InterPro: IPR006136 The flhB and flhA genes constitute an operon called flhB operon on the Salmonella typhimurium chromosome. They, together with FliI and FliH, may constitute the export apparatus of flagellin, the component protein of flagellar filament. The flhB gene encodes a highly hydrophobic polypeptide with several potential membrane-spanning segments, suggesting that it may be an integral membrane protein .; GO: 0009306 protein secretion, 0016020 membrane.
Probab=44.87 E-value=13 Score=17.42 Aligned_cols=42 Identities=14% Similarity=0.010 Sum_probs=17.1
Q ss_pred CCCCCCEEEEECCCCCEECCC-EEEEECCHHHHHHHHHHHHCCC
Q ss_conf 378764699805863114132-7996064234578898520789
Q gi|254780828|r 113 ADKTITLVITGMGDVLEPENG-VMAIGSGGSYALSAARALMSTQ 155 (190)
Q Consensus 113 ~~~~~~~~~~~d~~g~~~~~~-~~a~GSGs~~A~g~Le~~y~~~ 155 (190)
+-|+-+|-+-.-|....+.-| ..|=|.|.- |+=+=+-..++|
T Consensus 265 ITNPTHyAVALkY~~~~m~AP~VVAKG~D~~-AlkI~eiA~en~ 307 (352)
T TIGR00328 265 ITNPTHYAVALKYDPGKMKAPVVVAKGVDEL-ALKIKEIAEENN 307 (352)
T ss_pred EECCCEEEEEEEECCCCCCCCEEEECCCCHH-HHHHHHHHHHCC
T ss_conf 6376013455641488898887787788568-899999998869
No 55
>KOG0338 consensus
Probab=37.09 E-value=30 Score=15.10 Aligned_cols=35 Identities=29% Similarity=0.413 Sum_probs=23.9
Q ss_pred CEEEEECC--HHHHHHHHHHH-HCCCCC----------HHHHHHHHHH
Q ss_conf 27996064--23457889852-078999----------8999999999
Q gi|254780828|r 133 GVMAIGSG--GSYALSAARAL-MSTQNS----------AEEIARKAMS 167 (190)
Q Consensus 133 ~~~a~GSG--s~~A~g~Le~~-y~~~~s----------a~ela~~Al~ 167 (190)
..+++||| +.|++|+||.+ |+|-.- -+||+.+...
T Consensus 223 a~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~s 270 (691)
T KOG0338 223 ACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHS 270 (691)
T ss_pred HEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHHHHHH
T ss_conf 401146871145678899998527356761269998350899999999
No 56
>PRK10251 phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex; Provisional
Probab=33.82 E-value=30 Score=15.08 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=22.8
Q ss_pred CEEECCCCCCEEECCEEEEEEEEC
Q ss_conf 920067778177637179999979
Q gi|254780828|r 1 MVVMGDKHYAVKMHATTILTVRKD 24 (190)
Q Consensus 1 ~~~~~~~~~~~~~~GTTivgi~~~ 24 (190)
||.|-.-|.|.++-|.|..-+.|+
T Consensus 1 ~~~m~t~h~~lp~ag~~l~~~~FD 24 (207)
T PRK10251 1 MVDMKTTHTSLPFAGHTLHFVEFD 24 (207)
T ss_pred CCCCCCCCCCCCCCCCEEEEEEEC
T ss_conf 964211464446788078999768
No 57
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; InterPro: IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase is a member of the family of GHMP kinases that were previously designated as conserved hypothetical protein YchB or as isopentenyl monophosphate kinase. In Lycopersicon esculentum (tomato) and Escherichia coli the protein has been indentified as 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an enzyme of the deoxyxylulose phosphate pathway of terpenoid biosynthesis.; GO: 0050515 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity, 0016114 terpenoid biosynthetic process.
Probab=30.77 E-value=38 Score=14.45 Aligned_cols=39 Identities=28% Similarity=0.398 Sum_probs=28.3
Q ss_pred EECCHHHHHHHH---HHHHCCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf 606423457889---852078999899999999975401102
Q gi|254780828|r 137 IGSGGSYALSAA---RALMSTQNSAEEIARKAMSIAADICVY 175 (190)
Q Consensus 137 ~GSGs~~A~g~L---e~~y~~~~sa~ela~~Al~~A~erDvy 175 (190)
.|-||.=|=++| +.+|..+||.+||++-+...-+|..++
T Consensus 111 LgGGSsdAA~~L~~LN~LW~~~LS~~EL~~lG~~lGaDvpff 152 (322)
T TIGR00154 111 LGGGSSDAAAVLVGLNQLWNLNLSLEELAELGATLGADVPFF 152 (322)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEE
T ss_conf 654045799999987677621688789999988746983078
No 58
>pfam00947 Pico_P2A Picornavirus core protein 2A. This protein is a protease, involved in cleavage of the polyprotein.
Probab=28.99 E-value=33 Score=14.81 Aligned_cols=18 Identities=22% Similarity=0.545 Sum_probs=6.8
Q ss_pred CCCCCEEECCEEEEEEEE
Q ss_conf 777817763717999997
Q gi|254780828|r 6 DKHYAVKMHATTILTVRK 23 (190)
Q Consensus 6 ~~~~~~~~~GTTivgi~~ 23 (190)
|||+|+.+.|-+.+-|+.
T Consensus 51 nK~YPV~~~~p~~~~ie~ 68 (127)
T pfam00947 51 NKYYPVTFTGPTLIEIEE 68 (127)
T ss_pred CCCCCEEEECCCEEEECC
T ss_conf 868156981897699577
No 59
>TIGR00829 FRU PTS system, Fru family, IIB component; InterPro: IPR003353 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The PTS catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred to enzyme-I (EI) of PTS which in turn transfers it to a phosphoryl carrier protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease which consists of at least three structurally distinct domains (IIA, IIB, and IIC) which can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). IIB (2.7.1.69 from EC) is is phosphorylated by phospho-IIA, before the phosphoryl group is transferred to the sugar substrate.; GO: 0005351 sugar:hydrogen ion symporter activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane.
Probab=26.91 E-value=30 Score=15.15 Aligned_cols=19 Identities=21% Similarity=0.541 Sum_probs=13.6
Q ss_pred EEECCEEEEEECCCCCCCC
Q ss_conf 9979979998136545053
Q gi|254780828|r 21 VRKDGVVVIAGDGQVSLGQ 39 (190)
Q Consensus 21 i~~~dgVviAaDtR~S~G~ 39 (190)
|.-.|+|+||+|+.+....
T Consensus 50 i~aAd~VIlA~D~~id~~~ 68 (85)
T TIGR00829 50 IAAADLVILAADREIDLSR 68 (85)
T ss_pred HHCCCEEEEECCCCCCHHH
T ss_conf 6105857886146347254
No 60
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=26.12 E-value=46 Score=13.95 Aligned_cols=28 Identities=29% Similarity=0.410 Sum_probs=21.4
Q ss_pred ECCCEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf 1597599973130588999999999999
Q gi|254780828|r 52 LGKGNIIAGFAGSSADAFTLLERLEKKL 79 (190)
Q Consensus 52 i~d~~~~~g~ag~a~d~~~~~~~~~~~~ 79 (190)
-+.++++||-+|.+++.+++...+..+.
T Consensus 43 ~g~kI~~cGNGGSaa~A~Hfa~dl~~~~ 70 (192)
T PRK00414 43 AGGKVLSCGNGGSHCDAMHFAEELTGRY 70 (192)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHCCC
T ss_conf 7997999968588999999999874631
No 61
>PRK04425 Maf-like protein; Reviewed
Probab=26.11 E-value=31 Score=15.02 Aligned_cols=25 Identities=12% Similarity=0.011 Sum_probs=17.2
Q ss_pred EEEECCEEEEEECCCCCCCCEEEEC
Q ss_conf 9997997999813654505367744
Q gi|254780828|r 20 TVRKDGVVVIAGDGQVSLGQTVMKA 44 (190)
Q Consensus 20 gi~~~dgVviAaDtR~S~G~~v~sr 44 (190)
+-++++.+||||||-+..+..+..+
T Consensus 60 ~~~~~~~iVIgaDtvv~~~g~ilgK 84 (196)
T PRK04425 60 TGRFPEALIVGADQVAWCDGRQWGK 84 (196)
T ss_pred HHHCCCCEEEECCCEEEECCEECCC
T ss_conf 9758997798148499999998589
No 62
>PRK00234 Maf-like protein; Reviewed
Probab=25.89 E-value=34 Score=14.74 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=19.6
Q ss_pred EEEEECCEEEEEECCCCCCCCEEEEC
Q ss_conf 99997997999813654505367744
Q gi|254780828|r 19 LTVRKDGVVVIAGDGQVSLGQTVMKA 44 (190)
Q Consensus 19 vgi~~~dgVviAaDtR~S~G~~v~sr 44 (190)
++-++++.+||||||-+..+..+..+
T Consensus 56 v~~~~~~~~VIgaDtvv~~~g~il~K 81 (192)
T PRK00234 56 LAGSHPQHLIIGSDQVAVLGEQILGK 81 (192)
T ss_pred HHHHCCCCEEEECCEEEEECCEEECC
T ss_conf 47648986787358699989999779
No 63
>PRK01441 Maf-like protein; Reviewed
Probab=25.89 E-value=40 Score=14.30 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=14.5
Q ss_pred EECCEEEEEECCCCCCCCEEEEC
Q ss_conf 97997999813654505367744
Q gi|254780828|r 22 RKDGVVVIAGDGQVSLGQTVMKA 44 (190)
Q Consensus 22 ~~~dgVviAaDtR~S~G~~v~sr 44 (190)
.+++.+||+|||-+..+.-+..+
T Consensus 69 ~~~~~~VIgaDTvv~~~g~ilgK 91 (207)
T PRK01441 69 GLRGAFILAADTVVAVGRRILPK 91 (207)
T ss_pred CCCCCEEEEECEEEEECCEEECC
T ss_conf 47998899969299979999479
No 64
>TIGR02704 carboxysome_B carboxysome peptide B; InterPro: IPR014077 This entry describes the carboxysome operon protein orfB (protein B of Thiobacillus denitrificans). It distinguishes one of two closely related paralogs encoded by nearby genes in the carboxysome operons of a number of cyanobacteria and chemoautotrophic bacteria. More distantly related proteins are components of other types of shell such as the shell of the ethanolamine degradation organelle..
Probab=25.63 E-value=43 Score=14.15 Aligned_cols=35 Identities=11% Similarity=0.035 Sum_probs=27.3
Q ss_pred ECCCCCCEEEEECCCCCEE-CCCEEEEECCHHHHHH
Q ss_conf 1378764699805863114-1327996064234578
Q gi|254780828|r 112 IADKTITLVITGMGDVLEP-ENGVMAIGSGGSYALS 146 (190)
Q Consensus 112 ~~~~~~~~~~~~d~~g~~~-~~~~~a~GSGs~~A~g 146 (190)
.-+..+...+-.||.|..+ .+=|.++||-+-||.|
T Consensus 27 L~~~~G~~~VA~DPvG~p~G~WVft~sGSAAR~a~p 62 (80)
T TIGR02704 27 LEDAKGKISVAVDPVGAPEGKWVFTVSGSAARFAVP 62 (80)
T ss_pred ECCCCCCEEEEECCCCCCCCCEEEEECCHHHHCCCC
T ss_conf 229996467854576789897799700216323698
No 65
>TIGR00511 aIF-2BII_fam translation initiation factor, putative, aIF-2BII family; InterPro: IPR005250 The delineation of this family is based in part on a discussion and neighbour-joining phylogenetic study , , of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. The archaeal proteins are related to the common ancestor of eIF-2B alpha, beta, and delta rather then specifically to any one of them, and that designation of particular archaeal members as corresponding to eIF-2B alpha or eIF-2B delta is imprecise. It has been suggested that designating the archaeal proteins as translation initiation factors remains unproven. So far, members of this family are found only in the euryarchaeota..
Probab=25.27 E-value=32 Score=14.90 Aligned_cols=27 Identities=15% Similarity=0.166 Sum_probs=14.5
Q ss_pred ECCCEEEE-ECCHHHHHHHHHHHHCCCC
Q ss_conf 41327996-0642345788985207899
Q gi|254780828|r 130 PENGVMAI-GSGGSYALSAARALMSTQN 156 (190)
Q Consensus 130 ~~~~~~a~-GSGs~~A~g~Le~~y~~~~ 156 (190)
..|++... =-.|+.|+++....|++.-
T Consensus 114 IKDG~T~lTHCNS~AA~SVIK~A~~~GK 141 (303)
T TIGR00511 114 IKDGDTVLTHCNSEAALSVIKKAYDEGK 141 (303)
T ss_pred CCCCCEEEEECCHHHHHHHHHHHHHCCC
T ss_conf 2478715530050679999987753687
No 66
>TIGR01028 S7_S5_E_A ribosomal protein S7; InterPro: IPR005716 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . This family describes the members from the eukaryotic cytosol and the Archaea of the family that includes ribosomal protein S7 of bacteria and S5 of eukaryotes.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015935 small ribosomal subunit.
Probab=24.69 E-value=49 Score=13.78 Aligned_cols=32 Identities=28% Similarity=0.273 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHCCCCCHHH-HHHHHHHHHHCCC
Q ss_conf 23457889852078999899-9999999754011
Q gi|254780828|r 141 GSYALSAARALMSTQNSAEE-IARKAMSIAADIC 173 (190)
Q Consensus 141 s~~A~g~Le~~y~~~~sa~e-la~~Al~~A~erD 173 (190)
...+.|+.++.||.-+|-+| ||.+-|. ||+-|
T Consensus 153 ~~ia~GA~~AAfk~kksIae~LA~Eii~-AA~~~ 185 (206)
T TIGR01028 153 RNIALGAREAAFKNKKSIAECLAEEIIA-AAKGD 185 (206)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHH-HHHCC
T ss_conf 9999999999730788788887999999-97103
No 67
>PRK09225 threonine synthase; Validated
Probab=24.69 E-value=49 Score=13.78 Aligned_cols=28 Identities=14% Similarity=0.149 Sum_probs=21.5
Q ss_pred EECCCEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf 8159759997313058899999999999
Q gi|254780828|r 51 RLGKGNIIAGFAGSSADAFTLLERLEKK 78 (190)
Q Consensus 51 ~i~d~~~~~g~ag~a~d~~~~~~~~~~~ 78 (190)
..++++...+.-|..+|||.+++.+-..
T Consensus 180 ~~~~NV~~i~v~G~FDDcQ~lVK~~f~D 207 (465)
T PRK09225 180 LQGDNIHVVAVEGDFDDCQALVKAAFND 207 (465)
T ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHHC
T ss_conf 1799779998468767899999999719
No 68
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; InterPro: IPR006257 This group of sequences represent one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria, but not the Gram-positive bacteria.; GO: 0004742 dihydrolipoyllysine-residue acetyltransferase activity, 0006090 pyruvate metabolic process, 0045254 pyruvate dehydrogenase complex.
Probab=24.30 E-value=34 Score=14.74 Aligned_cols=27 Identities=7% Similarity=-0.022 Sum_probs=10.2
Q ss_pred ECCCEEEEEECCHHHHHHHHHHHHHHHH
Q ss_conf 1597599973130588999999999999
Q gi|254780828|r 52 LGKGNIIAGFAGSSADAFTLLERLEKKL 79 (190)
Q Consensus 52 i~d~~~~~g~ag~a~d~~~~~~~~~~~~ 79 (190)
.-+|-|+ ..---.+-+..|+..|....
T Consensus 370 ~iPHyYv-s~~~~~~~LL~LR~~LNa~~ 396 (584)
T TIGR01349 370 TIPHYYV-SVECNVDKLLKLRKELNAMA 396 (584)
T ss_pred CCCEEEE-EEEEEHHHHHHHHHHHHHHC
T ss_conf 8860799-99886106899999998446
No 69
>PRK01526 Maf-like protein; Reviewed
Probab=24.24 E-value=49 Score=13.79 Aligned_cols=20 Identities=20% Similarity=0.577 Sum_probs=10.4
Q ss_pred CCEEEEEECCCCCCCCEEEE
Q ss_conf 99799981365450536774
Q gi|254780828|r 24 DGVVVIAGDGQVSLGQTVMK 43 (190)
Q Consensus 24 ~dgVviAaDtR~S~G~~v~s 43 (190)
++.+||||||-+..+..+..
T Consensus 69 ~~~~VIgaDTvv~~~g~il~ 88 (205)
T PRK01526 69 ESAIIIAADTVAAVGRRILP 88 (205)
T ss_pred CCCEEEEECEEEEECCEEEC
T ss_conf 99899997939998999968
No 70
>PRK03411 consensus
Probab=23.96 E-value=34 Score=14.74 Aligned_cols=25 Identities=16% Similarity=0.182 Sum_probs=19.0
Q ss_pred EEEECCEEEEEECCCCCCCCEEEEC
Q ss_conf 9997997999813654505367744
Q gi|254780828|r 20 TVRKDGVVVIAGDGQVSLGQTVMKA 44 (190)
Q Consensus 20 gi~~~dgVviAaDtR~S~G~~v~sr 44 (190)
+-++++.+||+|||-+..+.-+..+
T Consensus 57 ~~~~~~~~VIgaDtvv~~~g~il~K 81 (194)
T PRK03411 57 ASRYPQHLIIGSDQVCVLDGEITGK 81 (194)
T ss_pred HHHCCCCEEECCCEEEEECCEEECC
T ss_conf 8758997665467699989999768
No 71
>PRK03098 consensus
Probab=23.80 E-value=41 Score=14.23 Aligned_cols=23 Identities=13% Similarity=0.303 Sum_probs=17.1
Q ss_pred EECCEEEEEECCCCCCCCEEEEC
Q ss_conf 97997999813654505367744
Q gi|254780828|r 22 RKDGVVVIAGDGQVSLGQTVMKA 44 (190)
Q Consensus 22 ~~~dgVviAaDtR~S~G~~v~sr 44 (190)
++++.+||+|||-+..+.-+..+
T Consensus 55 ~~~~~~vI~aDtvv~~~g~ilgK 77 (185)
T PRK03098 55 NNPDAIVLGADTIVTYDGRILGK 77 (185)
T ss_pred HCCCCEEEEECEEEEECCEEECC
T ss_conf 78998799877189719978469
No 72
>PRK02478 Maf-like protein; Reviewed
Probab=23.51 E-value=36 Score=14.64 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=14.3
Q ss_pred EECCEEEEEECCCCCCCCEEEEC
Q ss_conf 97997999813654505367744
Q gi|254780828|r 22 RKDGVVVIAGDGQVSLGQTVMKA 44 (190)
Q Consensus 22 ~~~dgVviAaDtR~S~G~~v~sr 44 (190)
++++.+||||||-+..+.-|..+
T Consensus 66 ~~~~~lVI~aDtvv~~~g~ilgK 88 (199)
T PRK02478 66 KFPGALVIGCDQTLSLGDEVFHK 88 (199)
T ss_pred HCCCCEEECCCCEEEECCEECCC
T ss_conf 58998897378589989998269
No 73
>TIGR01090 apt adenine phosphoribosyltransferase; InterPro: IPR005764 Adenine phosphoribosyltransferase (APRTase, 2.4.2.7 from EC) is a widely distributed enzyme, and its deficiency in humans causes the accumulation of 2,8-dihydroxyadenine. It is the sole catalyst for adenine recycling in most eukaryotes. AMP + diphosphate = adenine + 5-phospho-alpha-D-ribose 1-diphosphate ; GO: 0003999 adenine phosphoribosyltransferase activity, 0006168 adenine salvage.
Probab=23.11 E-value=43 Score=14.12 Aligned_cols=34 Identities=15% Similarity=0.388 Sum_probs=25.9
Q ss_pred CCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHH
Q ss_conf 5105798159759997313058899999999999998
Q gi|254780828|r 45 NARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQ 81 (190)
Q Consensus 45 ~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~ 81 (190)
..+||-.+|| .++| +|++.....|.+.+..++-+
T Consensus 113 ~g~RVliVDD--LlAT-GGT~~A~~eLi~~Lggev~~ 146 (175)
T TIGR01090 113 PGQRVLIVDD--LLAT-GGTAEATLELIKKLGGEVVE 146 (175)
T ss_pred CCCEEEEEEC--CCCC-HHHHHHHHHHHHHHCCEEEE
T ss_conf 7890899832--2012-67899999999985961687
No 74
>PRK02676 consensus
Probab=23.07 E-value=45 Score=14.02 Aligned_cols=23 Identities=13% Similarity=0.322 Sum_probs=15.5
Q ss_pred EECCEEEEEECCCCCCCCEEEEC
Q ss_conf 97997999813654505367744
Q gi|254780828|r 22 RKDGVVVIAGDGQVSLGQTVMKA 44 (190)
Q Consensus 22 ~~~dgVviAaDtR~S~G~~v~sr 44 (190)
.+++.+||+|||-+..+.-|..+
T Consensus 61 ~~~~~~VI~aDTvv~~~g~ilgK 83 (196)
T PRK02676 61 QFEPALVLGCDSVLAIGGEIYGK 83 (196)
T ss_pred HCCCCEEEEECEEEEECCEEECC
T ss_conf 48997999908799989999789
No 75
>COG0424 Maf Nucleotide-binding protein implicated in inhibition of septum formation [Cell division and chromosome partitioning]
Probab=22.82 E-value=49 Score=13.76 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=16.6
Q ss_pred CCEEEEEECCCCCCCCEEEEC
Q ss_conf 997999813654505367744
Q gi|254780828|r 24 DGVVVIAGDGQVSLGQTVMKA 44 (190)
Q Consensus 24 ~dgVviAaDtR~S~G~~v~sr 44 (190)
++.+||+|||-+..+.-|..+
T Consensus 63 ~~~~VigaDtvv~ldgrilgK 83 (193)
T COG0424 63 PDALVIGADTVVVLDGRILGK 83 (193)
T ss_pred CCCEEEECCEEEEECCEEECC
T ss_conf 998799627499989998269
No 76
>pfam05971 Methyltransf_10 Protein of unknown function (DUF890). This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of this family is unknown.
Probab=22.17 E-value=25 Score=15.61 Aligned_cols=35 Identities=14% Similarity=0.219 Sum_probs=15.1
Q ss_pred EEEECCHHHHHHHHHH-HHCCCCCHHHHHHHHHHHH
Q ss_conf 9960642345788985-2078999899999999975
Q gi|254780828|r 135 MAIGSGGSYALSAARA-LMSTQNSAEEIARKAMSIA 169 (190)
Q Consensus 135 ~a~GSGs~~A~g~Le~-~y~~~~sa~ela~~Al~~A 169 (190)
.=+|.|+..+|++|-. .|.+.+-+-|+-.+++..|
T Consensus 70 LDIGtGAscIYPLLg~~~y~W~fvgtDId~~sl~~A 105 (254)
T pfam05971 70 LDIGTGANCIYPLLGVTEYGWRFVGSEVDPQSLNSA 105 (254)
T ss_pred EEECCCHHHHHHHHCCCCCCCEEEEEECCHHHHHHH
T ss_conf 773366415777540400486379762798999999
No 77
>PRK00032 Maf-like protein; Reviewed
Probab=22.16 E-value=29 Score=15.20 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=19.2
Q ss_pred EEEEECCEEEEEECCCCCCCCEEEEC
Q ss_conf 99997997999813654505367744
Q gi|254780828|r 19 LTVRKDGVVVIAGDGQVSLGQTVMKA 44 (190)
Q Consensus 19 vgi~~~dgVviAaDtR~S~G~~v~sr 44 (190)
++...++.+||+||+-+..+.-+..+
T Consensus 57 ~~~~~~~~~VigaDtvv~~~g~i~~K 82 (189)
T PRK00032 57 VALVPQDLPVLGADTIVVLDGEVLEK 82 (189)
T ss_pred HHHCCCCCEEEECCEEEEECCEEECC
T ss_conf 97449997799547699999999779
No 78
>PRK00238 consensus
Probab=21.98 E-value=52 Score=13.62 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=16.4
Q ss_pred EECCEEEEEECCCCCCCCEEEEC
Q ss_conf 97997999813654505367744
Q gi|254780828|r 22 RKDGVVVIAGDGQVSLGQTVMKA 44 (190)
Q Consensus 22 ~~~dgVviAaDtR~S~G~~v~sr 44 (190)
.+++.+||+|||-+..+.-+..+
T Consensus 62 ~~~~~lVIgaDtvv~~~g~i~~K 84 (198)
T PRK00238 62 AEGPACVLGADTAVVLDGRILGK 84 (198)
T ss_pred CCCCCEEEECCCEEEECCEEECC
T ss_conf 38996899448199989999689
No 79
>PRK04719 consensus
Probab=21.17 E-value=51 Score=13.65 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=18.2
Q ss_pred EEEEECCEEEEEECCCCCCCCEEEEC
Q ss_conf 99997997999813654505367744
Q gi|254780828|r 19 LTVRKDGVVVIAGDGQVSLGQTVMKA 44 (190)
Q Consensus 19 vgi~~~dgVviAaDtR~S~G~~v~sr 44 (190)
++-.+++.+||+|||-+..+..+..+
T Consensus 59 ~~~~~~~~~VigaDtvv~~~g~i~gK 84 (188)
T PRK04719 59 LALVKATSVVLGSDTIVVCDGQVLEK 84 (188)
T ss_pred HHHHCCCCEEEEECEEEEECCEEECC
T ss_conf 88628998899708799989999789
No 80
>PRK00078 Maf-like protein; Reviewed
Probab=20.81 E-value=56 Score=13.41 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=14.3
Q ss_pred ECCEEEEEECCCCCCCCEEEEC
Q ss_conf 7997999813654505367744
Q gi|254780828|r 23 KDGVVVIAGDGQVSLGQTVMKA 44 (190)
Q Consensus 23 ~~dgVviAaDtR~S~G~~v~sr 44 (190)
.++.+||+|||-+..+..+..+
T Consensus 62 ~~~~~Vi~aDtvv~~~g~ilgK 83 (192)
T PRK00078 62 NESAIVIGCDTVVAFNGKVLGK 83 (192)
T ss_pred CCCCEEEEECEEEEECCEEECC
T ss_conf 9997999968199989999679
No 81
>PRK01946 consensus
Probab=20.77 E-value=59 Score=13.30 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=13.8
Q ss_pred EECCEEEEEECCCCCCCCEEEEC
Q ss_conf 97997999813654505367744
Q gi|254780828|r 22 RKDGVVVIAGDGQVSLGQTVMKA 44 (190)
Q Consensus 22 ~~~dgVviAaDtR~S~G~~v~sr 44 (190)
.+++.+||+|||-+..+.-+..+
T Consensus 68 ~~~~~lVI~aDtvv~~~g~i~~K 90 (195)
T PRK01946 68 MKPNELLITADTIVWLDGKALGK 90 (195)
T ss_pred CCCCCEEEEECEEEEECCEEECC
T ss_conf 48998899847399889999769
No 82
>PRK04222 consensus
Probab=20.58 E-value=26 Score=15.52 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=20.3
Q ss_pred EEEEECCEEEEEECCCCCCCCEEEEC
Q ss_conf 99997997999813654505367744
Q gi|254780828|r 19 LTVRKDGVVVIAGDGQVSLGQTVMKA 44 (190)
Q Consensus 19 vgi~~~dgVviAaDtR~S~G~~v~sr 44 (190)
|+-++++.+||+|||-+..+..+..+
T Consensus 57 v~~~~~~~~VIgaDtvv~~~g~ilgK 82 (191)
T PRK04222 57 VAVRFPEAWVIGSDQVADLDGQALGK 82 (191)
T ss_pred HHHHCCCCEEEECCEEEEECCEEECC
T ss_conf 89768986697145699989999479
No 83
>PRK00148 Maf-like protein; Reviewed
Probab=20.46 E-value=50 Score=13.71 Aligned_cols=22 Identities=14% Similarity=0.217 Sum_probs=14.5
Q ss_pred EECCEEEEEECCCCCCCCEEEE
Q ss_conf 9799799981365450536774
Q gi|254780828|r 22 RKDGVVVIAGDGQVSLGQTVMK 43 (190)
Q Consensus 22 ~~~dgVviAaDtR~S~G~~v~s 43 (190)
++++.+||+|||-+..+.-+..
T Consensus 59 ~~~~~iVI~aDtvv~~~g~i~g 80 (195)
T PRK00148 59 VAPDAVVLGCDSMLLIDGRLLG 80 (195)
T ss_pred HCCCCEEEEEEEEEEECCEEEC
T ss_conf 7899779964359998999835
No 84
>PRK00648 Maf-like protein; Reviewed
Probab=20.23 E-value=60 Score=13.22 Aligned_cols=23 Identities=17% Similarity=0.118 Sum_probs=13.8
Q ss_pred EEECCEEEEEECCCCCCCCEEEE
Q ss_conf 99799799981365450536774
Q gi|254780828|r 21 VRKDGVVVIAGDGQVSLGQTVMK 43 (190)
Q Consensus 21 i~~~dgVviAaDtR~S~G~~v~s 43 (190)
-.+++.+||+|||-+..+.-+..
T Consensus 61 ~~~~~~~vI~aDtvv~~~g~i~~ 83 (191)
T PRK00648 61 DHFPDELIITADTIVWYDGKVLG 83 (191)
T ss_pred HHCCCCEEEEECEEEEECCEEEC
T ss_conf 21899889996849998999967
Done!