HHsearch results for GI: 254780828 and protein with PDBid: 1g0u_M
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M*
Probab=100.00 E-value=2e-32 Score=221.26 Aligned_cols=181 Identities=15% Similarity=0.145 Sum_probs=150.3
Q ss_pred CCCCCEEECCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 77781776371799999799799981365450536774451057981597599973130588999999999999985366
Q gi|254780828|r 6 DKHYAVKMHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPNQ 85 (190)
Q Consensus 6 ~~~~~~~~~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~~ 85 (190)
+..+|+. +|||+|||+++||||||||+|+|.|+++.+++++||++|+++++++ .+|.++|.+.+.+.++.++.++...
T Consensus 33 ~~~~p~~-tGtTvvgi~~~dGVvlaaD~r~t~g~l~~~~~~~KI~~I~d~i~~~-~sG~~aD~~~l~~~l~~~~~~~~~~ 110 (266)
T 1g0u_M 33 NTQQPIV-TGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVG-ISGDISDMQHIERLLKDLVTENAYD 110 (266)
T ss_dssp -CCCCCE-EECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEE-EEEEHHHHHHHHHHHHHHHHHHHTT
T ss_pred HCCCCCC-CCCEEEEEEECCEEEEEECCCCCCCCEEECCCCCEEEEECCCEEEE-EECCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 3338814-7533999998999999986876668665348765289957978999-8347077999999999999999975
Q ss_pred -------CCCCHHHHHHHHHHHHHHH-----HCCC--EEEECCC-CCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHH
Q ss_conf -------5630679999997611222-----0131--0451378-76469980586311413279960642345788985
Q gi|254780828|r 86 -------LLRSSVELAKDWRMDKYLR-----NLEA--MILIADK-TITLVITGMGDVLEPENGVMAIGSGGSYALSAARA 150 (190)
Q Consensus 86 -------~~~~~~~~~~~~~~~~y~~-----~~~~--~~~~~~~-~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~ 150 (190)
....+..+++.+.+..|.. ++.. .+.+.|. +++.++..|+.|...+.+|+|+|||+.+|+++||+
T Consensus 111 ~~~~~~~~~~~~~~~a~~ls~~~y~~~~~~~P~~vs~liaG~d~~g~~~l~~iD~~G~~~~~~~~aiGsGs~~a~~~Le~ 190 (266)
T 1g0u_M 111 NPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRK 190 (266)
T ss_dssp CTTTTTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHTHHHHHTT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCEEEEEECCCCCEEECCEEEECCCHHHHHHHHHH
T ss_conf 47667774027999999999988875433376640789988817997399998798557873779988768999999999
Q ss_pred HHC-----CCCC---HHHHHHHHHHHHHCCCEEECCCEEEEEEECC
Q ss_conf 207-----8999---8999999999754011022595699999417
Q gi|254780828|r 151 LMS-----TQNS---AEEIARKAMSIAADICVYTNHNIVLETLKVG 188 (190)
Q Consensus 151 ~y~-----~~~s---a~ela~~Al~~A~erDvyTgd~i~i~~i~~~ 188 (190)
.|+ ++|+ |.+++++||+++.+||..+|++|+|.+|+.+
T Consensus 191 ~~~~~~~~~~ms~eea~~l~~~al~~~~~rD~~sg~~i~i~vI~kd 236 (266)
T 1g0u_M 191 VVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKN 236 (266)
T ss_dssp TCSSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETT
T ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECC
T ss_conf 8631278889899999999999999999645668996799999699