HHsearch results for GI: 254780828 and protein with PDBid: 1iru_M
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
Probab=100.00 E-value=1.2e-34 Score=235.08 Aligned_cols=181 Identities=18% Similarity=0.178 Sum_probs=155.9
Q ss_pred CCCCEEECCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCC--
Q ss_conf 778177637179999979979998136545053677445105798159759997313058899999999999998536--
Q gi|254780828|r 7 KHYAVKMHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPN-- 84 (190)
Q Consensus 7 ~~~~~~~~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~-- 84 (190)
||+||.+||||+|||+++||||||||+|+|.|.++.+++.+||++|++|++++ .+|.++|++.+.+.++.++++++.
T Consensus 1 ~f~py~~nG~Tivgi~~~dgVvlaaD~r~~~~~~~~~~~~~Ki~~I~~~i~~~-~sG~~~D~~~l~~~l~~~~~~~~~~~ 79 (213)
T 1iru_M 1 RFSPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIG-CSGFHGDCLTLTKIIEARLKMYKHSN 79 (213)
T ss_dssp CCCSCCCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEE-EEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCEEEEEEECCEEEEEECCCCCCCCEEECCCCCEEEEECCCEEEE-EEECHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 98886578807999997999999987875558766638765299957987999-40657999999999999988889870
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCC-----EEEECCCC-CCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHH------
Q ss_conf 656306799999976112220131-----04513787-646998058631141327996064234578898520------
Q gi|254780828|r 85 QLLRSSVELAKDWRMDKYLRNLEA-----MILIADKT-ITLVITGMGDVLEPENGVMAIGSGGSYALSAARALM------ 152 (190)
Q Consensus 85 ~~~~~~~~~~~~~~~~~y~~~~~~-----~~~~~~~~-~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y------ 152 (190)
....++..+++.++...|.++..| .+.+.|.. +|.+|..|+.|+..+..|.|+|||+.+|+++||..|
T Consensus 80 ~~~~~~~~la~~ls~~~~~~~~~p~~v~~lvaG~d~~g~p~ly~iD~~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~~ 159 (213)
T 1iru_M 80 NKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQ 159 (213)
T ss_dssp SSCCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCSCS
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCHHEEEEEEEECCCCCCEEEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 99676269999999999862787320011477770689965899858853888226557845999999999751523212
Q ss_pred ---CCCCC---HHHHHHHHHHHHHCCCEEECCCEEEEEEECC
Q ss_conf ---78999---8999999999754011022595699999417
Q gi|254780828|r 153 ---STQNS---AEEIARKAMSIAADICVYTNHNIVLETLKVG 188 (190)
Q Consensus 153 ---~~~~s---a~ela~~Al~~A~erDvyTgd~i~i~~i~~~ 188 (190)
+++|+ |.+++++||..|.+||+.||++++|.+|+.+
T Consensus 160 ~~~~~~~~~eea~~l~~~al~~~~~rd~~sg~~~~v~vi~k~ 201 (213)
T 1iru_M 160 NVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKE 201 (213)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCC
T ss_conf 334689999999999999999999757778990899999389