HHsearch results for GI: 254780828 and protein with PDBid: 1iru_N
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
Probab=100.00 E-value=4.9e-32 Score=218.78 Aligned_cols=178 Identities=19% Similarity=0.106 Sum_probs=152.2
Q ss_pred CCEEECCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHC---CC
Q ss_conf 817763717999997997999813654505367744510579815975999731305889999999999999853---66
Q gi|254780828|r 9 YAVKMHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYP---NQ 85 (190)
Q Consensus 9 ~~~~~~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~---~~ 85 (190)
+|+. +|||+|||+++||||||+|+|+|.|.++.+++++||++|+++++++ ++|.++|++.+.+.++.++.+++ ..
T Consensus 3 ~~~~-~GtTivgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~I~~~i~~~-~sG~~~D~~~l~~~l~~~~~~~~~~~~~ 80 (219)
T 1iru_N 3 NPMV-TGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLG-ASGDYADFQYLKQVLGQMVIDEELLGDG 80 (219)
T ss_dssp SCCS-EECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEE-EEEEHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred CCCC-CCCEEEEEEECCEEEEEECCCCCCCCEEECCCCCEEEEECCCEEEE-ECCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9867-6217999998999999987876678665137765099917980599-4127779999999999999984664468
Q ss_pred CCCCHHHHHHHHHHHHHHHH-----CC--CEEEECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHC--CCC
Q ss_conf 56306799999976112220-----13--1045137876469980586311413279960642345788985207--899
Q gi|254780828|r 86 LLRSSVELAKDWRMDKYLRN-----LE--AMILIADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMS--TQN 156 (190)
Q Consensus 86 ~~~~~~~~~~~~~~~~y~~~-----~~--~~~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~--~~~ 156 (190)
...++..+++.++...|.++ +. ..+.+.|.++|+++..|+.|...+.+++|+|||+++|+++||+.|+ ++|
T Consensus 81 ~~~~~~~~a~~l~~~~y~~~~~~~p~~~~~l~aG~d~~~~~l~~~D~~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~l 160 (219)
T 1iru_N 81 HSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVL 160 (219)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEEETTEEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHTSCSCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEEECCCEEEEECCEEEECCCHHHHHHHHHHHHHCCCCC
T ss_conf 87878899999999999754324861179999997588866999889704666149998078899999999975224799
Q ss_pred C---HHHHHHHHHHHHHCCCEEECCCEEEEEEECC
Q ss_conf 9---8999999999754011022595699999417
Q gi|254780828|r 157 S---AEEIARKAMSIAADICVYTNHNIVLETLKVG 188 (190)
Q Consensus 157 s---a~ela~~Al~~A~erDvyTgd~i~i~~i~~~ 188 (190)
+ |.+++++||+.|.+||+++|+++++.+|+.+
T Consensus 161 s~~ea~~l~~~al~~~~~~d~~sg~~i~v~~i~~~ 195 (219)
T 1iru_N 161 SQTEARDLVERCMRVLYYRDARSYNRFQTATVTEK 195 (219)
T ss_dssp CHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETT
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECC
T ss_conf 99999999999999999851768994899999589