HHsearch results for GI: 254780828 and protein with PDBid: 1iru_N

>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
Probab=100.00  E-value=4.9e-32  Score=218.78  Aligned_cols=178  Identities=19%  Similarity=0.106  Sum_probs=152.2

Q ss_pred             CCEEECCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHC---CC
Q ss_conf             817763717999997997999813654505367744510579815975999731305889999999999999853---66
Q gi|254780828|r    9 YAVKMHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYP---NQ   85 (190)
Q Consensus         9 ~~~~~~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~---~~   85 (190)
                      +|+. +|||+|||+++||||||+|+|+|.|.++.+++++||++|+++++++ ++|.++|++.+.+.++.++.+++   ..
T Consensus         3 ~~~~-~GtTivgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~I~~~i~~~-~sG~~~D~~~l~~~l~~~~~~~~~~~~~   80 (219)
T 1iru_N            3 NPMV-TGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLG-ASGDYADFQYLKQVLGQMVIDEELLGDG   80 (219)
T ss_dssp             SCCS-EECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEE-EEEEHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred             CCCC-CCCEEEEEEECCEEEEEECCCCCCCCEEECCCCCEEEEECCCEEEE-ECCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             9867-6217999998999999987876678665137765099917980599-4127779999999999999984664468


Q ss_pred             CCCCHHHHHHHHHHHHHHHH-----CC--CEEEECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHC--CCC
Q ss_conf             56306799999976112220-----13--1045137876469980586311413279960642345788985207--899
Q gi|254780828|r   86 LLRSSVELAKDWRMDKYLRN-----LE--AMILIADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMS--TQN  156 (190)
Q Consensus        86 ~~~~~~~~~~~~~~~~y~~~-----~~--~~~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~--~~~  156 (190)
                      ...++..+++.++...|.++     +.  ..+.+.|.++|+++..|+.|...+.+++|+|||+++|+++||+.|+  ++|
T Consensus        81 ~~~~~~~~a~~l~~~~y~~~~~~~p~~~~~l~aG~d~~~~~l~~~D~~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~l  160 (219)
T 1iru_N           81 HSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVL  160 (219)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEEETTEEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHTSCSCC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEEECCCEEEEECCEEEECCCHHHHHHHHHHHHHCCCCC
T ss_conf             87878899999999999754324861179999997588866999889704666149998078899999999975224799


Q ss_pred             C---HHHHHHHHHHHHHCCCEEECCCEEEEEEECC
Q ss_conf             9---8999999999754011022595699999417
Q gi|254780828|r  157 S---AEEIARKAMSIAADICVYTNHNIVLETLKVG  188 (190)
Q Consensus       157 s---a~ela~~Al~~A~erDvyTgd~i~i~~i~~~  188 (190)
                      +   |.+++++||+.|.+||+++|+++++.+|+.+
T Consensus       161 s~~ea~~l~~~al~~~~~~d~~sg~~i~v~~i~~~  195 (219)
T 1iru_N          161 SQTEARDLVERCMRVLYYRDARSYNRFQTATVTEK  195 (219)
T ss_dssp             CHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETT
T ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECC
T ss_conf             99999999999999999851768994899999589