HHsearch results for GI: 254780828 and protein with PDBid: 1ryp_D
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3bdm_C* 1z7q_D 1fnt_D* 2zcy_C* 1g0u_C 1vsy_D ...
Probab=99.95 E-value=1.6e-26 Score=184.29 Aligned_cols=172 Identities=14% Similarity=0.132 Sum_probs=136.6
Q ss_pred CCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCC--CCCCCHH
Q ss_conf 37179999979979998136545053677445105798159759997313058899999999999998536--6563067
Q gi|254780828|r 14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPN--QLLRSSV 91 (190)
Q Consensus 14 ~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~--~~~~~~~ 91 (190)
+|||+|||+++||||||+|+|++++.++.+++.+||++|++|++++ ++|.++|.+.+.+.++.++..++. ....++.
T Consensus 27 ~G~tvIgik~~dgVvlaad~~~~~~~~~~~~~~~Ki~~I~~~i~~~-~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~ 105 (241)
T 1ryp_D 27 RGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLS-FSGLNADSRILIEKARVEAQSHRLTLEDPVTVE 105 (241)
T ss_dssp TSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEE-EEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred CCCCEEEEEECCEEEEEEECCCCCCCEEECCCCCCEEEECCCEEEE-EEECCCCHHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 4986899995998999996465656641013511379827977999-532234099999999999999999739999999
Q ss_pred HHHHHHHHHHH-------HHHCCC--EEEECC--CCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCC---CCC
Q ss_conf 99999976112-------220131--045137--8764699805863114132799606423457889852078---999
Q gi|254780828|r 92 ELAKDWRMDKY-------LRNLEA--MILIAD--KTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMST---QNS 157 (190)
Q Consensus 92 ~~~~~~~~~~y-------~~~~~~--~~~~~~--~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~---~~s 157 (190)
.+++.+....+ .+++.. .+.+.| .++|++|..|+.|+..+.++.|+|+|+.+|+++||+.|++ +|+
T Consensus 106 ~la~~l~~~~~~~~~~~~~rP~~v~~li~G~D~~~~gp~Ly~idp~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~t 185 (241)
T 1ryp_D 106 YLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPAT 185 (241)
T ss_dssp HHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCEEEBSEEEESTTHHHHHHHHHTTCCTTSCCCS
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCEEEEEECEEEECCCHHHHHHHHHHHCCCCCCCCC
T ss_conf 99999999999863134557765059999984778997799995772897425799897889999999854164667888
Q ss_pred HHHHHH---HHHHHHHCCCEEECCCEEEEEEECCC
Q ss_conf 899999---99997540110225956999994178
Q gi|254780828|r 158 AEEIAR---KAMSIAADICVYTNHNIVLETLKVGD 189 (190)
Q Consensus 158 a~ela~---~Al~~A~erDvyTgd~i~i~~i~~~~ 189 (190)
++|+++ +||..+.++ ++.+|+|.+|+.+.
T Consensus 186 ~~e~v~la~~al~~~~~~---~~~~iei~vi~~~~ 217 (241)
T 1ryp_D 186 VEECVKLTVRSLLEVVQT---GAKNIEITVVKPDS 217 (241)
T ss_dssp HHHHHHHHHHHHHHHHCS---CSTTEEEEEEETTT
T ss_pred HHHHHHHHHHHHHHHHCC---CCCCEEEEEEECCC
T ss_conf 999999999999997558---98817999998899