HHsearch results for GI: 254780828 and protein with PDBid: 1ryp_F
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3bdm_E* 1fnt_F 1z7q_F 1vsy_F* 2zcy_E* 3l5q_K ...
Probab=99.94 E-value=2.7e-25 Score=176.60 Aligned_cols=171 Identities=13% Similarity=0.026 Sum_probs=140.5
Q ss_pred CCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCC--CCCCCHH
Q ss_conf 37179999979979998136545053677445105798159759997313058899999999999998536--6563067
Q gi|254780828|r 14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPN--QLLRSSV 91 (190)
Q Consensus 14 ~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~--~~~~~~~ 91 (190)
+|||+|||+++||||||+|+|.+... ..+.+||++|+++++++ ++|..+|.+.+.+.++.++++++. ....++.
T Consensus 30 ~G~t~igi~~~dgvvla~d~~~~~~l---~~~~~KI~~I~~~i~~~-~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~ 105 (233)
T 1ryp_F 30 QGSVTVGLRSNTHAVLVALKRNADEL---SSYQKKIIKCDEHMGLS-LAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVE 105 (233)
T ss_dssp TSCCEEEEECSSEEEEEEECCCSSTT---BCCCCCEEEEETTEEEE-EEECHHHHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred CCCCEEEEEECCEEEEEEECCCCCCC---CCCCCEEEEECCCEEEE-EEECCHHHHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 58868999969959999953666667---76502489946982799-753537799999999999987566539978699
Q ss_pred HHHHHHHHHH-------HHHHCCC--EEEECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHH----CCCCCH
Q ss_conf 9999997611-------2220131--04513787646998058631141327996064234578898520----789998
Q gi|254780828|r 92 ELAKDWRMDK-------YLRNLEA--MILIADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALM----STQNSA 158 (190)
Q Consensus 92 ~~~~~~~~~~-------y~~~~~~--~~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y----~~~~sa 158 (190)
.+++.++... ..+++.. .+.+.|.++|.+|..|+.|+..+.++.|+|+|+..|.++||+.| +++|+.
T Consensus 106 ~la~~l~~~~~~~t~~~~~RP~gvs~liaG~D~~gp~Ly~~Dp~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~~d~~~ 185 (233)
T 1ryp_F 106 RAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNP 185 (233)
T ss_dssp HHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEEEEEEECTTSCEEEESEEEESTTHHHHHHHHHHHHHHHTTCCSCH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEECCCEEEEECCEEEECCCHHHHHHHHHHHHHHCCCCCCCH
T ss_conf 99999999999986241577863059999982899879996488779942789988771889999999875057778999
Q ss_pred HH---HHHHHHHHHHCCCEEECCCEEEEEEECC
Q ss_conf 99---9999999754011022595699999417
Q gi|254780828|r 159 EE---IARKAMSIAADICVYTNHNIVLETLKVG 188 (190)
Q Consensus 159 ~e---la~~Al~~A~erDvyTgd~i~i~~i~~~ 188 (190)
+| ++.+||..+.++|..+++++++.+|+.+
T Consensus 186 eeai~la~~~l~~~~~~d~~~~~~iei~ii~k~ 218 (233)
T 1ryp_F 186 DELIKAGVEAISQSLRDESLTVDNLSIAIVGKD 218 (233)
T ss_dssp HHHHHHHHHHHTTSCCSSCCCTTTEEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC
T ss_conf 999999999999986315788983999999899