HHsearch results for GI: 254780828 and protein with PDBid: 1ryp_J

>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 1g0u_I 1fnt_J 1z7q_J 2zcy_I* ...
Probab=100.00  E-value=2.4e-32  Score=220.71  Aligned_cols=179  Identities=14%  Similarity=0.110  Sum_probs=152.9

Q ss_pred             CCEEECCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHC--CCC
Q ss_conf             817763717999997997999813654505367744510579815975999731305889999999999999853--665
Q gi|254780828|r    9 YAVKMHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYP--NQL   86 (190)
Q Consensus         9 ~~~~~~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~--~~~   86 (190)
                      +|+++||||+|||+++||||||||+|+|+|.++.+++.+||+++ +++++ +++|.++|++.+.+.++.+++.++  ...
T Consensus         2 ~p~~~nG~T~vgi~~~dgVvlaaD~r~t~~~~~~~~~~~Ki~~~-~~i~~-~~aG~~aD~~~l~~~l~~~~~~~~~~~~~   79 (204)
T 1ryp_J            2 DPSSINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHY-GHVFL-GITGLATDVTTLNEMFRYKTNLYKLKEER   79 (204)
T ss_dssp             CGGGSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEE-TTEEE-EEEECHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCCCCCEEEEEEEECCEEEEEECCCCCCCCEEECCCCCEEEEE-CCEEE-EEEECHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             98776873899999899999998788666888561775479994-99999-99766898999999999998888987399


Q ss_pred             CCCHHHHHHHHHHHHHHHHCCCE-----EEECCC--CCCEEEEECCCCCEEC-CCEEEEECCHHHHHHHHHHHHCCCCCH
Q ss_conf             63067999999761122201310-----451378--7646998058631141-327996064234578898520789998
Q gi|254780828|r   87 LRSSVELAKDWRMDKYLRNLEAM-----ILIADK--TITLVITGMGDVLEPE-NGVMAIGSGGSYALSAARALMSTQNSA  158 (190)
Q Consensus        87 ~~~~~~~~~~~~~~~y~~~~~~~-----~~~~~~--~~~~~~~~d~~g~~~~-~~~~a~GSGs~~A~g~Le~~y~~~~sa  158 (190)
                      +.++..+++.++...|.++..|+     +.+.|.  +.|.+|..|+.|...+ ..+++.|+|+.+|+++|++.|+++|+.
T Consensus        80 ~~~~~~la~~l~~~~~~~~~~p~~~~~lvaG~d~~~g~~~l~~~D~~G~~~~~~~~~a~G~gs~~a~~~L~~~~~~~ls~  159 (204)
T 1ryp_J           80 AIEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEP  159 (204)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCCSSCCH
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCCEEEECCEECCCCCCEEEEECCCCEEEEECCCEEEECCHHHHHHHHHHCCCCCCCH
T ss_conf             87568899999999886175420100201055547897079998699829970364896076699999997302247999


Q ss_pred             HH---HHHHHHHHHHCCCEEECCCEEEEEEECCC
Q ss_conf             99---99999997540110225956999994178
Q gi|254780828|r  159 EE---IARKAMSIAADICVYTNHNIVLETLKVGD  189 (190)
Q Consensus       159 ~e---la~~Al~~A~erDvyTgd~i~i~~i~~~~  189 (190)
                      +|   ++++||..|.+||++||++++|.+|+.+.
T Consensus       160 ~ea~~l~~~al~~a~~~d~~sg~~~~v~ii~kdg  193 (204)
T 1ryp_J          160 EDLFETISQALLNAADRDALSGWGAVVYIIKKDE  193 (204)
T ss_dssp             HHHHHHHHHHHHHHHTTBTTSCSCEEEEEEESSC
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCC
T ss_conf             9999999999999987467669838999998995