HHsearch results for GI: 254780828 and protein with PDBid: 3bdm_F

>3bdm_F Proteasome component C1; ubiquitin, proteolysis, pathogen, virulence factor, cytoplasm, hydrolase, nucleus, protease; HET: GDT; 2.70A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_G* 2zcy_F* 1z7q_G
Probab=99.95  E-value=3.7e-26  Score=182.06  Aligned_cols=174  Identities=14%  Similarity=0.050  Sum_probs=142.6

Q ss_pred             CCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHC--CCCCCCHH
Q ss_conf             3717999997997999813654505367744510579815975999731305889999999999999853--66563067
Q gi|254780828|r   14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYP--NQLLRSSV   91 (190)
Q Consensus        14 ~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~--~~~~~~~~   91 (190)
                      +|||+|||+++||||||+|+|++++.++ .++.+||++|++|++++ .+|..+|++.+.+.++.++..++  .....++.
T Consensus        32 ~G~t~Vgik~kdGVVlaadkr~~s~l~~-~~~~~KI~~I~~~i~~a-~sG~~aD~~~l~~~~r~e~~~~~~~~~~~i~~~  109 (287)
T 3bdm_F           32 NGTTSIGIKCNDGVVFAVEKLITSKLLV-PQKNVKIQVVDRHIGCV-YSGLIPDGRHLVNRGREEAASFKKLYKTPIPIP  109 (287)
T ss_dssp             TSCCEEEEEETTEEEEEEEEEECCTTBC-TTTSCCCEEETTTEEEE-EEECHHHHHHHHHHHHHHHHHHHHHHCSCCCHH
T ss_pred             CCCCEEEEEECCEEEEEEECCCCCCCCC-CCCCCEEEEECCCEEEE-EEECHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf             5987899994999999993665666610-03333289977980799-987568899999999999999899709989889


Q ss_pred             HHHHHHHHHHH-------HHHCCC--EEEECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHH---HHCCCCCHH
Q ss_conf             99999976112-------220131--045137876469980586311413279960642345788985---207899989
Q gi|254780828|r   92 ELAKDWRMDKY-------LRNLEA--MILIADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARA---LMSTQNSAE  159 (190)
Q Consensus        92 ~~~~~~~~~~y-------~~~~~~--~~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~---~y~~~~sa~  159 (190)
                      .+++.+....+       .+++..  .+.+.|.++|.+|..||.|+..+..+.|+|+|+++|+++||+   .|+++|+.+
T Consensus       110 ~la~~l~~~~~~~t~~~~~RPfgvs~liaG~D~~gp~Ly~iDpsG~~~~~~~~AiG~gs~~a~~~LEk~~~~~~~~ms~e  189 (287)
T 3bdm_F          110 AFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAR  189 (287)
T ss_dssp             HHHHHHHHHHHHTTSCTTBCCCSEEEEEEEEETTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHTCTTCCCHH
T ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCEEEEECCCEEEEEECEEEECCCHHHHHHHHHHHHHCCCCCCCHH
T ss_conf             99999999998853203457658999999972998889998587558722869989888999999986665278998999


Q ss_pred             H---HHHHHHHHHHCCCEEECCCEEEEEEECCC
Q ss_conf             9---99999997540110225956999994178
Q gi|254780828|r  160 E---IARKAMSIAADICVYTNHNIVLETLKVGD  189 (190)
Q Consensus       160 e---la~~Al~~A~erDvyTgd~i~i~~i~~~~  189 (190)
                      |   ++.++|..+.+.+.-+..++++.+|..++
T Consensus       190 Eai~la~kaL~~~~d~~~~~~~~iev~~i~~~~  222 (287)
T 3bdm_F          190 EAVKQAAKIIYLAHEDNKEKDFELEISWCSLSE  222 (287)
T ss_dssp             HHHHHHHHHHHHHGGGSTTSEEEEEEEEEETTT
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEC
T ss_conf             999999999999861336877627999999606