HHsearch results for GI: 254780828 and protein with PDBid: 3h4p_A
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=99.96 E-value=2.9e-28 Score=195.24 Aligned_cols=171 Identities=22% Similarity=0.142 Sum_probs=141.4
Q ss_pred CCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCC--CCCCHH
Q ss_conf 371799999799799981365450536774451057981597599973130588999999999999985366--563067
Q gi|254780828|r 14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPNQ--LLRSSV 91 (190)
Q Consensus 14 ~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~~--~~~~~~ 91 (190)
+|||+|||+++||||||+|+|.+ ++++.+++.+||++|+++++++ ++|.++|++.+.+.++.++++++.. ...++.
T Consensus 37 ~G~TvIgik~~dgVvlaad~r~t-~~~~~~~~~~KI~~i~~~i~~~-~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 114 (264)
T 3h4p_A 37 RGTTAIGIACKDGVVLAVDRRIT-SKLVKIRSIEKIFQIDDHVAAA-TSGLVADARVLIDRARLEAQIYRLTYGEEISIE 114 (264)
T ss_dssp HSCCEEEECCSSEEEEEEECCCC-STTBCTTTCCCEEEEETTEEEE-EEECSHHHHHHHTTHHHHHHHHHHTTCSCCCHH
T ss_pred CCCCEEEEEECCEEEEEEECCCC-CCCCCCCCCCEEEEECCCCEEE-EEECHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 59878999969999999956777-7763467666389960783389-514538899999999999999899878987489
Q ss_pred HHHHHHHHHHH-------HHHCCC--EEEECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCH---H
Q ss_conf 99999976112-------220131--04513787646998058631141327996064234578898520789998---9
Q gi|254780828|r 92 ELAKDWRMDKY-------LRNLEA--MILIADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSA---E 159 (190)
Q Consensus 92 ~~~~~~~~~~y-------~~~~~~--~~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa---~ 159 (190)
.+++.++...+ .+++.. .+.+.+..+|.+|..|+.|+..+.++.|+|+|+.+|+++|++.|+++|+. .
T Consensus 115 ~la~~~~~~~~~~~~~~~~rP~~v~~liaG~d~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~y~~~ms~eeai 194 (264)
T 3h4p_A 115 MLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKNEARLFETDPSGALIEYKATAIGSGRPVVMELLEKEYRDDITLDEGL 194 (264)
T ss_dssp HHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEETTEEEEEEECTTCCCEEESEEEESTTHHHHTTTHHHHCCTTCCSHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCEEEEECCCCCEECCCCEEECCCHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 99999999999875356767665367999961799828995677362235624444768999999997644899999999
Q ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEECC
Q ss_conf 99999999754011022595699999417
Q gi|254780828|r 160 EIARKAMSIAADICVYTNHNIVLETLKVG 188 (190)
Q Consensus 160 ela~~Al~~A~erDvyTgd~i~i~~i~~~ 188 (190)
+++++||..|.+++ ++++++|.+|..+
T Consensus 195 ~lal~aL~~a~~~~--~~~~~ei~ii~~~ 221 (264)
T 3h4p_A 195 ELAITALTKANEDI--KPENVDVCIITVK 221 (264)
T ss_dssp HHHHHHHHHHSSSC--CTTSEEEEEEETT
T ss_pred HHHHHHHHHHHHCC--CCCCEEEEEEEEC
T ss_conf 99999999985446--8786799999954