HHsearch results for GI: 254780828 and protein with PDBid: 3h4p_a
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=99.97 E-value=9.8e-30 Score=204.39 Aligned_cols=173 Identities=21% Similarity=0.139 Sum_probs=144.9
Q ss_pred CEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHC--CCCCCCHHH
Q ss_conf 717999997997999813654505367744510579815975999731305889999999999999853--665630679
Q gi|254780828|r 15 ATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYP--NQLLRSSVE 92 (190)
Q Consensus 15 GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~--~~~~~~~~~ 92 (190)
-||+|||+++||||||+|+|+|.|.++.+++.+||++|+++++++ ++|..+|.+.+.+.++.++++++ ......+..
T Consensus 1 MTT~vgi~~~dgVvlaaD~r~t~~~~~~~~~~~KI~~i~~~i~~~-~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~ 79 (219)
T 3h4p_a 1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMT-IAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLA 79 (219)
T ss_dssp -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEE-CCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHH
T ss_pred CCEEEEEEECCEEEEEECCCCCCCCEECCCCCCEEEEECCCEEEE-ECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 932999998999999983886668663068755699978968999-6446388999999999998876540255665478
Q ss_pred HHHHHHHHHHHHHCCC---E--EEECC-CCCCEEEEECCCCCE-ECCCEEEEECCHHHHHHHHHHHHCCCCCHH---HHH
Q ss_conf 9999976112220131---0--45137-876469980586311-413279960642345788985207899989---999
Q gi|254780828|r 93 LAKDWRMDKYLRNLEA---M--ILIAD-KTITLVITGMGDVLE-PENGVMAIGSGGSYALSAARALMSTQNSAE---EIA 162 (190)
Q Consensus 93 ~~~~~~~~~y~~~~~~---~--~~~~~-~~~~~~~~~d~~g~~-~~~~~~a~GSGs~~A~g~Le~~y~~~~sa~---ela 162 (190)
+++.+....|.++..| . +.+.+ .++|+++..|+.|.. +..+|.|+|+|+.+|+++||+.|+++|+.+ +++
T Consensus 80 ~a~~l~~~~~~~~~~P~~~~~llaG~d~~~~~~L~~~d~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~l~ 159 (219)
T 3h4p_a 80 CATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIKLA 159 (219)
T ss_dssp HHHHHHHHHHHTTTTTCCCCCEEEEEETTTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTSCCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCEEEEECCCCCEEECCEEEEEECCCHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 99999999985167773489999998258993576652898802334047743671876546761567799999999999
Q ss_pred HHHHHHHHCCCEEECCCEEEEEEECC
Q ss_conf 99999754011022595699999417
Q gi|254780828|r 163 RKAMSIAADICVYTNHNIVLETLKVG 188 (190)
Q Consensus 163 ~~Al~~A~erDvyTgd~i~i~~i~~~ 188 (190)
++||..|.+||+++|++++|.+|+.+
T Consensus 160 ~~al~~~~~~d~~s~~~v~v~vi~~~ 185 (219)
T 3h4p_a 160 LNALKSAMERDTFSGNGISLAVITKD 185 (219)
T ss_dssp HHHHHHHHTSCSSCCSCCCEEEEETT
T ss_pred HHHHHHHHHHCCCCCCCEEEEEEECC
T ss_conf 99999998636788996799999789