PSIBLAST alignment of GI: 254780828 and protein with PDB id: 1q5q
>gi|40889391|pdb|1Q5Q|H Chain H, The Rhodococcus 20s Proteasome Length = 235
>gi|40889392|pdb|1Q5Q|I Chain I, The Rhodococcus 20s Proteasome Length = 235
>gi|40889393|pdb|1Q5Q|J Chain J, The Rhodococcus 20s Proteasome Length = 235
>gi|40889394|pdb|1Q5Q|K Chain K, The Rhodococcus 20s Proteasome Length = 235
>gi|40889395|pdb|1Q5Q|L Chain L, The Rhodococcus 20s Proteasome Length = 235
>gi|40889396|pdb|1Q5Q|M Chain M, The Rhodococcus 20s Proteasome Length = 235
>gi|40889397|pdb|1Q5Q|N Chain N, The Rhodococcus 20s Proteasome Length = 235
Score = 111 bits (278), Expect = 5e-23, Method: Composition-based stats.
Identities = 41/184 (22%), Positives = 69/184 (37%), Gaps = 22/184 (11%)
Query: 16 TTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERL 75
TTI+ + G V++AGD + + G + + KV + + AG AG++ A L+
Sbjct: 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSA-AGIAGTAGIAIELVRLF 59
Query: 76 EKKLEQYPNQLLRSSVELAKDWRMDKYLRNLEAMILIADKTITLVITGM----------- 124
+LE Y K R+ +R + + L++
Sbjct: 60 AVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGR 119
Query: 125 -------GDVLEPENGVMAIGSGGSYALSAARALMSTQ---NSAEEIARKAMSIAADICV 174
G E G A+GSG +A SA + + S +A A +++ AAD
Sbjct: 120 IVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDDS 179
Query: 175 YTNH 178
T
Sbjct: 180 ATGG 183