RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780828|ref|YP_003065241.1| ATP-dependent protease
peptidase subunit [Candidatus Liberibacter asiaticus str. psy62]
(190 letters)
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase;
2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A
1yyf_D*
Length = 180
Score = 172 bits (437), Expect = 4e-44
Identities = 97/178 (54%), Positives = 129/178 (72%), Gaps = 4/178 (2%)
Query: 13 MHATTILTVRKDGVVVIAGDGQVSLGQTV-MKANARKVRRLGKGNIIAGFAGSSADAFTL 71
HATTI V+ G ++GDGQV+ GQ V MK ARKVR+L G ++AGFAGS ADAFTL
Sbjct: 3 FHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTL 62
Query: 72 LERLEKKLEQYPNQLLRSSVELAKDWRMDKYLRNLEAMILIADKTITLVITGMGDVLEPE 131
E+ E KLE+Y L R++VELAK+WR DK LR LEAM+++ ++ L+++G G+V+EP+
Sbjct: 63 FEKFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSGTGEVIEPD 122
Query: 132 NGVMAIGSGGSYALSAARALM---STQNSAEEIARKAMSIAADICVYTNHNIVLETLK 186
+G++AIGSGG+YAL+A RAL SA EIAR A+ A +ICVYTN I+LE L+
Sbjct: 123 DGILAIGSGGNYALAAGRALKKHAGESMSASEIARAALETAGEICVYTNDQIILEELE 180
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine
residue, hydrolase; 2.10A {Thermotoga maritima} SCOP:
d.153.1.4
Length = 171
Score = 165 bits (419), Expect = 5e-42
Identities = 97/171 (56%), Positives = 132/171 (77%), Gaps = 1/171 (0%)
Query: 16 TTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERL 75
TTIL VR++G V+ GDGQV+ G TV+K NARKVR+LG+G ++AGFAGS ADA TL +R
Sbjct: 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRF 60
Query: 76 EKKLEQYPNQLLRSSVELAKDWRMDKYLRNLEAMILIADKTITLVITGMGDVLEPENGVM 135
E KL ++ L +++VELAKDWR D+ LR LEA++L+ADK +I+G G+V++P++
Sbjct: 61 EAKLREWGGNLTKAAVELAKDWRTDRVLRRLEALLLVADKENIFIISGNGEVIQPDDDAA 120
Query: 136 AIGSGGSYALSAARALM-STQNSAEEIARKAMSIAADICVYTNHNIVLETL 185
AIGSGG YAL+AA+AL+ +T SA EI KAM+IA +IC+YTN NIV+E +
Sbjct: 121 AIGSGGPYALAAAKALLRNTDLSAREIVEKAMTIAGEICIYTNQNIVIEEV 171
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus
influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G*
1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C*
1ht2_A* 1ned_A
Length = 174
Score = 160 bits (405), Expect = 2e-40
Identities = 106/173 (61%), Positives = 139/173 (80%), Gaps = 2/173 (1%)
Query: 16 TTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERL 75
TTI++VR++G VV+ GDGQVSLG TVMK NARKVRRL G ++AGFAG +ADAFTL E
Sbjct: 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELF 60
Query: 76 EKKLEQYPNQLLRSSVELAKDWRMDKYLRNLEAMILIADKTITLVITGMGDVLEPE-NGV 134
E+KLE + LL+S+VELAKDWR D+ LR LEAM+++AD+ +L+ITG+GDV++PE + +
Sbjct: 61 ERKLEMHQGHLLKSAVELAKDWRTDRALRKLEAMLIVADEKESLIITGIGDVVQPEEDQI 120
Query: 135 MAIGSGGSYALSAARALM-STQNSAEEIARKAMSIAADICVYTNHNIVLETLK 186
+AIGSGG+YALSAARAL+ +T+ SA EI K++ IA DICV+TN N +E L
Sbjct: 121 LAIGSGGNYALSAARALVENTELSAHEIVEKSLRIAGDICVFTNTNFTIEELP 173
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB:
3hfa_H 2fhg_H* 2fhh_H 3h6i_C 3h6f_C 3hf9_H
Length = 291
Score = 103 bits (258), Expect = 2e-23
Identities = 46/196 (23%), Positives = 74/196 (37%), Gaps = 22/196 (11%)
Query: 14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLE 73
H TTI+ ++ G VV+AGD + + G + + RKV G AG++A A
Sbjct: 56 HGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDD-YTATGIAGTAAVAVEFAR 114
Query: 74 RLEKKLEQYPNQLLRSSVELAKDWRM--------DKYLRNLEAMILIA----------DK 115
+LE Y K R+ ++ L A+ L+A
Sbjct: 115 LYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSA 174
Query: 116 TITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMS---TQNSAEEIARKAMSIAADI 172
+ G E G A+GSG +A S+ + L S +S +A +A+ AAD
Sbjct: 175 GRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADD 234
Query: 173 CVYTNHNIVLETLKVG 188
T ++ +
Sbjct: 235 DSATGGPDLVRGIFPT 250
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
Length = 219
Score = 98.6 bits (245), Expect = 8e-22
Identities = 33/189 (17%), Positives = 64/189 (33%), Gaps = 16/189 (8%)
Query: 13 MHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLL 72
+ T++L V+ +G VVIA D S G N ++ R+ + + G +G AD L
Sbjct: 6 VTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNN-STMLGASGDYADFQYLK 64
Query: 73 ERLEKKLEQYP--NQLLRSSVELAKDW------RMDKYLRNLEAMILIA--DKTITLVIT 122
+ L + + S W + L ++I + +
Sbjct: 65 QVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGY 124
Query: 123 GMGDVLEPENGVMAIGSGGSYALSAARALMS-----TQNSAEEIARKAMSIAADICVYTN 177
+ E +A G G A R ++ +Q A ++ + M + +
Sbjct: 125 VDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYYRDARSY 184
Query: 178 HNIVLETLK 186
+ T+
Sbjct: 185 NRFQTATVT 193
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
Length = 201
Score = 95.6 bits (237), Expect = 7e-21
Identities = 21/184 (11%), Positives = 59/184 (32%), Gaps = 14/184 (7%)
Query: 16 TTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERL 75
++ ++ V++A D + MK + K+ ++ + I+ G + D E +
Sbjct: 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSE-KILLLCVGEAGDTVQFAEYI 60
Query: 76 EKKLEQYPNQLLRSSVELAKDW------------RMDKYLRNLEAMILIADKTITLVITG 123
+K ++ Y + A R ++ L A + +
Sbjct: 61 QKNVQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDY 120
Query: 124 MGDVLEPENGVMAIGSGGSYALSAARALMS-TQNSAEEIARKAMSIAADICVYTNHNIVL 182
+ + + G+ + ++ + ++ A E+ RK + + +
Sbjct: 121 LAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKCLEELQKRFILNLPTFSV 180
Query: 183 ETLK 186
+
Sbjct: 181 RIID 184
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, hydrolase; 3.10A {Rhodococcus
erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Length = 294
Score = 95.2 bits (236), Expect = 9e-21
Identities = 40/196 (20%), Positives = 69/196 (35%), Gaps = 22/196 (11%)
Query: 14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLE 73
H TTI+ + G V++AGD + + G + + V + AG AG++ A L+
Sbjct: 64 HGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDE-YSAAGIAGTAGIAIELVR 122
Query: 74 RLEKKLEQYPNQLLRSSVELAKDWRMDKYLR------------------NLEAMILIADK 115
+LE Y K R+ +R +
Sbjct: 123 LFAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRA 182
Query: 116 TITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMS---TQNSAEEIARKAMSIAADI 172
+ +G E G A+GSG +A SA + + S + +A A +++ AAD
Sbjct: 183 GRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADD 242
Query: 173 CVYTNHNIVLETLKVG 188
T + +
Sbjct: 243 DSATGGPDLTRGIYPT 258
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I*
1g65_I 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I*
3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 1g0u_I
1fnt_J 1z7q_J 2zcy_I* 3bdm_I*
Length = 204
Score = 94.1 bits (233), Expect = 2e-20
Identities = 28/187 (14%), Positives = 58/187 (31%), Gaps = 15/187 (8%)
Query: 13 MHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLL 72
++ ++ + V IA D ++ + K+ G++ G G + D TL
Sbjct: 6 INGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHY--GHVFLGITGLATDVTTLN 63
Query: 73 ERLEKKLEQYPNQLLRS----------SVELAKDWRMDKYLRNLEAMILIADKTITLVIT 122
E K Y + R+ S L + ++ + A I +
Sbjct: 64 EMFRYKTNLYKLKEERAIEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGF 123
Query: 123 GMGDVLEPENGVMAIGSGGSYALSAARAL---MSTQNSAEEIARKAMSIAADICVYTNHN 179
+ ++ + G+ +L E +A+ AAD +
Sbjct: 124 DLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALLNAADRDALSGWG 183
Query: 180 IVLETLK 186
V+ +K
Sbjct: 184 AVVYIIK 190
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M*
1jd2_L* 1g65_L 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L*
3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L*
3hye_L* 1g0u_L 2zcy_L* 3bdm_L*
Length = 222
Score = 90.3 bits (223), Expect = 3e-19
Identities = 29/203 (14%), Positives = 59/203 (29%), Gaps = 32/203 (15%)
Query: 13 MHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLL 72
+ TIL + + V+AGD + ++ KV G NI+ G +AD L+
Sbjct: 7 DNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGD-NIVMSANGFAADGDALV 65
Query: 73 ERLEKKLEQYPNQLLRSSVELAKDWR----------MDKYLRNLEAMILIADKTITLVIT 122
+R + ++ Y + + R Y + L D +
Sbjct: 66 KRFKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSF 125
Query: 123 GMGDVLEPENGVMAIGSGGSYALS--------------------AARALMSTQNSAEEIA 162
E E A G+ S + + ++
Sbjct: 126 DPVGSYEREQ-CRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVIKLV 184
Query: 163 RKAMSIAADICVYTNHNIVLETL 185
R + + A + + + + +
Sbjct: 185 RDSFTSATERHIQVGDGLEILIV 207
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
Length = 205
Score = 86.8 bits (214), Expect = 3e-18
Identities = 28/186 (15%), Positives = 63/186 (33%), Gaps = 14/186 (7%)
Query: 13 MHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLL 72
+ ++ ++ V IA D + + ++ + +K+ +G I AG + D T+
Sbjct: 6 YNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIG-LAGLATDVQTVA 64
Query: 73 ERLEKKLEQYPNQL-----LRSSVELAKDWRMDKYLRNLEAMILIA--DKTITLVITGMG 125
+RL+ +L Y + + + + + +K +IA D
Sbjct: 65 QRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSL 124
Query: 126 DVLEPENGVMAIGSGGSYALSAARALMS------TQNSAEEIARKAMSIAADICVYTNHN 179
D++ G+ A S + E +AM A D +
Sbjct: 125 DLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAVSGMG 184
Query: 180 IVLETL 185
+++ +
Sbjct: 185 VIVHII 190
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, hydrolase; 2.60A {Rhodococcus
erythropolis} SCOP: d.153.1.4
Length = 235
Score = 85.2 bits (210), Expect = 8e-18
Identities = 41/194 (21%), Positives = 71/194 (36%), Gaps = 22/194 (11%)
Query: 16 TTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERL 75
TTI+ + G V++AGD + + G + + KV + AG AG++ A L+
Sbjct: 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDE-YSAAGIAGTAGIAIELVRLF 59
Query: 76 EKKLEQYPNQLLRSSVELAKDWRMDKYL--------RNLEAMILIA----------DKTI 117
+LE Y K R+ + + L + L+
Sbjct: 60 AVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGR 119
Query: 118 TLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAEE---IARKAMSIAADICV 174
+ +G E G A+GSG +A SA + + S + E A +++ AAD
Sbjct: 120 IVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDDS 179
Query: 175 YTNHNIVLETLKVG 188
T + +
Sbjct: 180 ATGGPDLTRGIYPT 193
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
Length = 205
Score = 82.1 bits (202), Expect = 6e-17
Identities = 37/177 (20%), Positives = 64/177 (36%), Gaps = 11/177 (6%)
Query: 16 TTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERL 75
TTI+ V+ DG VV+ D + + G + K+ + I +GS+AD + + +
Sbjct: 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHD-RIFCCRSGSAADTQAVADAV 59
Query: 76 EKKLEQYPNQLLRS-SVELAKDWRMDKYLRNLEAMILIADKTITLVITGMGDVLEPENGV 134
+L + +L V A + R E ++ G P G+
Sbjct: 60 TYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGM 119
Query: 135 M------AIGSGGSYALSAARALMS---TQNSAEEIARKAMSIAADICVYTNHNIVL 182
M GSG SY A T+ + A+++A + + I L
Sbjct: 120 MVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRL 176
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
Length = 213
Score = 81.3 bits (200), Expect = 1e-16
Identities = 28/195 (14%), Positives = 63/195 (32%), Gaps = 23/195 (11%)
Query: 13 MHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLL 72
+ TIL + + ++A D ++S G ++ ++ K +L + G +G D TL
Sbjct: 7 FNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTD-KTVIGCSGFHGDCLTLT 65
Query: 73 ERLEKKLEQY---------PNQLLRSSVELAKDWRMDKYLRNLEAMILIADKTITLVITG 123
+ +E +L+ Y + + R Y L + +
Sbjct: 66 KIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFD 125
Query: 124 MGDVLEPENGVMAIGSGGSYALSAARALMS------------TQNSAEEIARKAMSIAAD 171
+ ++ GS + + + + A + + AA+
Sbjct: 126 PVGSYQRDSFKAG-GSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAE 184
Query: 172 ICVYTNHNIVLETLK 186
VYT + + +
Sbjct: 185 RDVYTGDALRICIVT 199
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease,
NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP:
d.153.1.4 PDB: 2zcy_M* 3bdm_M*
Length = 266
Score = 80.9 bits (199), Expect = 2e-16
Identities = 32/194 (16%), Positives = 65/194 (33%), Gaps = 26/194 (13%)
Query: 13 MHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLL 72
+ T++++++ D V+IA D S G + ++ +G N + G +G +D +
Sbjct: 39 VTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGD-NTVVGISGDISDMQHIE 97
Query: 73 ERLEKKLEQYPNQLLRSSVELAKDWR----------------MDKYLRNLEAMILIADKT 116
L+ + + + E A + M+ + + ++
Sbjct: 98 RLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGD 157
Query: 117 ITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMS--------TQNSAEEIARKAMSI 168
L + V +A G G A R ++ T AEE AM +
Sbjct: 158 QFLRYVNLLGVTYSSP-TLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRV 216
Query: 169 AADICVYTNHNIVL 182
++ N L
Sbjct: 217 LYYRDARSSRNFSL 230
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H*
1jd2_H* 1g65_H 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H*
3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H*
3hye_H* 3bdm_H* 1fnt_I* 2zcy_H*
Length = 222
Score = 78.3 bits (192), Expect = 1e-15
Identities = 38/184 (20%), Positives = 80/184 (43%), Gaps = 10/184 (5%)
Query: 16 TTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERL 75
TTI+ V+ + VVIA D + + G V N K+ R+ I AG++AD + + +
Sbjct: 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISP-KIWCAGAGTAADTEAVTQLI 59
Query: 76 EKKLEQYPNQLLR--SSVELAKDWR--MDKYLRNLEAMILIA--DKTITLVITGMGDVLE 129
+E + R V + + + KY ++ A +++A D T + + +
Sbjct: 60 GSNIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVDPTGSHLFSIHAHGST 119
Query: 130 PENGVMAIGSGGSYALSAARALMSTQNSAEE---IARKAMSIAADICVYTNHNIVLETLK 186
+++GSG A++ + + EE +A A+ + + N+ + ++
Sbjct: 120 DVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVME 179
Query: 187 VGDE 190
+G +
Sbjct: 180 IGKD 183
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
Length = 234
Score = 78.2 bits (192), Expect = 1e-15
Identities = 34/176 (19%), Positives = 64/176 (36%), Gaps = 10/176 (5%)
Query: 16 TTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERL 75
TTI V +V+ D + + G V N K+ + NI AG++AD + +
Sbjct: 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISP-NIYCCGAGTAADTDMTTQLI 59
Query: 76 EKKLEQYPNQLLRS-SVELAKDWRMDKYLRN---LEAMILIA--DKTITLVITGMGDVLE 129
LE + R V A R + A +++ D T + +
Sbjct: 60 SSNLELHSLSTGRLPRVVTANRMLKQMLFRYRGYIGAALVLGGVDVTGPHLYSIYPHGST 119
Query: 130 PENGVMAIGSGGSYALSAARALMS---TQNSAEEIARKAMSIAADICVYTNHNIVL 182
+ + +GSG A++ + A+ + +A++ + + NI L
Sbjct: 120 DKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDL 175
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
Length = 204
Score = 76.3 bits (187), Expect = 4e-15
Identities = 33/181 (18%), Positives = 64/181 (35%), Gaps = 11/181 (6%)
Query: 16 TTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERL 75
TT L + V++A D + + G + +KV + ++ AG +AD L
Sbjct: 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINP-YLLGTMAGGAADCSFWERLL 59
Query: 76 EK-----KLEQYPNQLLRSSVELAKDWRMDKYLRNLEAMILIA--DKTITLVITGMGDVL 128
+ +L + ++ +L + L +I DK + +
Sbjct: 60 ARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGN 119
Query: 129 EPENGVMAIGSGGSYALSAARALMS---TQNSAEEIARKAMSIAADICVYTNHNIVLETL 185
++GSG YA S A ++AR+A+ A Y+ + L +
Sbjct: 120 RISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHV 179
Query: 186 K 186
+
Sbjct: 180 R 180
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g65_N*
1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N*
2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N*
3gpj_N* 3gpt_N* 3gpw_N* 3hye_N*
Length = 205
Score = 73.2 bits (179), Expect = 3e-14
Identities = 32/182 (17%), Positives = 62/182 (34%), Gaps = 10/182 (5%)
Query: 14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLE 73
+I+ V V++ D + + G + K+ R+ I +GS+AD + +
Sbjct: 8 LGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHD-KIWCCRSGSAADTQAIAD 66
Query: 74 RLEKKLEQYPNQLLRSSVELAKDWRMDKYLRN--------LEAMILIADKTITLVITGMG 125
++ LE Y +Q S E A + N + A +K I G
Sbjct: 67 IVQYHLELYTSQYGTPSTETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEVYTIPLGG 126
Query: 126 DVLEPENGVMAIGSGGSYALSAARALMS-TQNSAEEIARKAMSIAADICVYTNHNIVLET 184
V + + GS Y + ++ + + ++S A + I +
Sbjct: 127 SVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVV 186
Query: 185 LK 186
L
Sbjct: 187 LT 188
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N*
1jd2_M* 1g65_M 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M*
3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M*
3hye_M*
Length = 233
Score = 69.0 bits (168), Expect = 6e-13
Identities = 32/193 (16%), Positives = 66/193 (34%), Gaps = 24/193 (12%)
Query: 13 MHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLL 72
+ T++++++ D V+IA D S G + ++ +G N + G +G +D +
Sbjct: 6 VTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGD-NTVVGISGDISDMQHIE 64
Query: 73 ERLEKKLEQYPNQLLRSSVE-------LAKDWRMDKYLRNLEAMILIADKTITLVITGMG 125
L+ + + + E + + Y R + L + V +
Sbjct: 65 RLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGD 124
Query: 126 DVLE--------PENGVMAIGSGGSYALSAARALMSTQNS--------AEEIARKAMSIA 169
L + +A G G A R ++ ++ AEE AM +
Sbjct: 125 QFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVL 184
Query: 170 ADICVYTNHNIVL 182
++ N L
Sbjct: 185 YYRDARSSRNFSL 197
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A
{Archaeoglobus fulgidus} SCOP: d.153.1.4
Length = 202
Score = 68.6 bits (167), Expect = 8e-13
Identities = 36/179 (20%), Positives = 68/179 (37%), Gaps = 14/179 (7%)
Query: 16 TTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERL 75
TT + + VV+A + + ++G + A+K+ ++ + AGS DA L +
Sbjct: 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIAD-RMAMTTAGSVGDAQFLARII 59
Query: 76 EKKLEQYPNQLLRSSV---------ELAKDWRMDKYLRNLEAMILIADKTITLVITGMGD 126
+ + Y + R L +R YL L + ++ I +G
Sbjct: 60 KIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSIDPIGG 119
Query: 127 VLEPENGVMAIGSGGSYALSAARALMS---TQNSAEEIARKAMSIAADICVYTNHNIVL 182
+E ++ V A GSG A + + A E+A +A+ A + I +
Sbjct: 120 AIEEKDIV-ATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDV 177
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K
1g0u_J* 1jd2_J* 1g65_J 1z7q_K 2f16_J* 2fak_J* 2fny_J*
2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J*
3gpj_J* 3gpt_J* 3gpw_J* 3hye_J*
Length = 198
Score = 67.9 bits (165), Expect = 1e-12
Identities = 34/185 (18%), Positives = 64/185 (34%), Gaps = 15/185 (8%)
Query: 16 TTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERL 75
IL +R V++A V+ G +V+K + K R+L + + FAG + D E +
Sbjct: 2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSP-HTLMSFAGEAGDTVQFAEYI 60
Query: 76 EKKLEQYPNQLLR-------SSVELAKDWRMDKYLRNLEAMILIA--DKTITLVITGMGD 126
+ ++ Y + SS + + + R + +LI DK D
Sbjct: 61 QANIQLYSIREDYELSPQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQID 120
Query: 127 VLE--PENGVMAIGSGGSYALSAARAL---MSTQNSAEEIARKAMSIAADICVYTNHNIV 181
L E A G G Y S T ++ + + ++
Sbjct: 121 YLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLLKLCVQELEKRMPMDFKGVI 180
Query: 182 LETLK 186
++ +
Sbjct: 181 VKIVD 185
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase,
protease, threonine protease; 4.10A {Methanocaldococcus
jannaschii}
Length = 219
Score = 64.8 bits (157), Expect = 1e-11
Identities = 43/179 (24%), Positives = 69/179 (38%), Gaps = 13/179 (7%)
Query: 16 TTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERL 75
TT + + D V++A D + SLG V A+K+ ++ I AGS DA ++ L
Sbjct: 2 TTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDD-YIAMTIAGSVGDAQAIVRLL 60
Query: 76 EKKLEQYPNQLLRSSVELAKDWRMDKYLRNLEAMILIADKTITLVITGMGDVL---EPEN 132
+ + Y + R+ LA + L + + I G L +P
Sbjct: 61 IAEAKLYKMRTGRNIPPLACATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLG 120
Query: 133 GVM------AIGSGGSYALSAARALMSTQNSAEE---IARKAMSIAADICVYTNHNIVL 182
G+ A GSG A A S EE +A A+ A + ++ + I L
Sbjct: 121 GMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIKLALNALKSAMERDTFSGNGISL 179
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L
1z7q_L 1g0u_K 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K*
2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K*
3gpt_K* 3gpw_K* 3hye_K* 1g65_K*
Length = 212
Score = 64.4 bits (156), Expect = 1e-11
Identities = 28/178 (15%), Positives = 61/178 (34%), Gaps = 12/178 (6%)
Query: 16 TTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERL 75
TT L R G +++A D + + G V ++V + ++ AG +AD L
Sbjct: 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINP-FLLGTMAGGAADCQFWETWL 59
Query: 76 EKKLEQYPNQLLRSSVELAKDWRMDKYLRNLEAMILIADKTITLVITGMGDVL------- 128
+ + + A + + + L I G +
Sbjct: 60 GSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDG 119
Query: 129 -EPENGVMAIGSGGSYALSAARALMS---TQNSAEEIARKAMSIAADICVYTNHNIVL 182
+ + +GSG ++A + + A + ++++ AA Y+ ++ L
Sbjct: 120 TRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNL 177
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator
11S, hydrolase/hydrolase activator complex; 1.90A
{Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H
1yau_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Length = 217
Score = 62.6 bits (151), Expect = 6e-11
Identities = 32/189 (16%), Positives = 69/189 (36%), Gaps = 11/189 (5%)
Query: 10 AVKMHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAF 69
++ TT + + V++A + +V++ +M N +K+ ++ AG DA
Sbjct: 4 TLE-TGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDT-YTGMTIAGLVGDAQ 61
Query: 70 TLLERLEKKLEQYPNQLLRSSVELAKDWRMDKYLRNLEAMILIADKTITLVITGMGDVLE 129
L+ ++ +LE Y Q + A + L ++ M + + + T
Sbjct: 62 VLVRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGIDTAPHVFSI 121
Query: 130 PENG------VMAIGSGGSYALSAARALMS---TQNSAEEIARKAMSIAADICVYTNHNI 180
G + GSG + + S T + ++ +A+S A + I
Sbjct: 122 DAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMI 181
Query: 181 VLETLKVGD 189
+ + D
Sbjct: 182 DVAVITRKD 190
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
Length = 261
Score = 48.5 bits (115), Expect = 9e-07
Identities = 30/190 (15%), Positives = 64/190 (33%), Gaps = 19/190 (10%)
Query: 9 YAVK--MHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSA 66
YA++ HA T L + + V++A + + + K+ +L + ++ AG ++
Sbjct: 23 YAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNE-DMACSVAGITS 81
Query: 67 DAFTLLERLEKKLEQYPNQLLRSSVELAKDWRMDKYLRNLEAMILIADKTITLVITGMGD 126
DA L L ++Y Q + + ++L+ G
Sbjct: 82 DANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDK 141
Query: 127 VLEPENGVM------------AIGSGGSYALSAARALMS----TQNSAEEIARKAMSIAA 170
+ IG+ + A+S + T SA +A K ++
Sbjct: 142 HYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTM 201
Query: 171 DICVYTNHNI 180
D+ + +
Sbjct: 202 DVSKLSAEKV 211
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A
{Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Length = 246
Score = 46.9 bits (111), Expect = 3e-06
Identities = 31/179 (17%), Positives = 64/179 (35%), Gaps = 19/179 (10%)
Query: 9 YAVKM--HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSA 66
YA + T + ++ V++ D +V + K K+ ++ + +I A +G A
Sbjct: 26 YAREAVKRGATAIGIKCKEGVILIADKRVGSKL-LEKDTIEKIYKIDE-HICAATSGLVA 83
Query: 67 DAFTLLERLEKKLEQY---------PNQLLRSSVELAKDWRMDKYLRNLEAMILIA--DK 115
DA L++R + + +L + + + + +R +LIA ++
Sbjct: 84 DARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVNE 143
Query: 116 TITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMS---TQNSAEEIARKAMSIAAD 171
L T L AIG G + + A + AM ++ +
Sbjct: 144 VPKLYETDPSGALLEYKA-TAIGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIE 201
Score = 45.4 bits (107), Expect = 9e-06
Identities = 17/192 (8%), Positives = 33/192 (17%), Gaps = 26/192 (13%)
Query: 9 YAVK--MHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSA 66
K + + G V A L + R + S+
Sbjct: 30 KEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKL-YKMRTGRNIP-PLACATLLSNI 87
Query: 67 DAFTLLERLEKKLEQY---------PNQLLRSSVELAKDWRMDKYLRNLEAMILIA--DK 115
+ + ++ L + + A ++
Sbjct: 88 LHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYD 147
Query: 116 TITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMS---TQNSAEEIARKAMSIAAD- 171
V G+ L M + +S A E A
Sbjct: 148 RDMSVEEGIKLALNALKSAMERDTFSGNGISLAVITKDGVKIFEDEEIEKILDSMKAKPK 207
Query: 172 -------ICVYT 176
Sbjct: 208 KKTTKRSRRKSK 219
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
Length = 254
Score = 44.2 bits (104), Expect = 2e-05
Identities = 27/187 (14%), Positives = 60/187 (32%), Gaps = 20/187 (10%)
Query: 10 AVKMHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAF 69
AV+ +++T + +R VV + V + + + +++ + + ++ AG ADA
Sbjct: 29 AVE-NSSTAIGIRCKDGVVFGVEKLVL-SKLYEEGSNKRLFNVDR-HVGMAVAGLLADAR 85
Query: 70 TLLERLEKKLEQY---------PNQLLRSSVELAKDWRMDKYLRNLEAMILIA----DKT 116
+L + ++ + L + + +R ++ +
Sbjct: 86 SLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDG 145
Query: 117 ITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMS---TQNSAEEIARKAMSIAADIC 173
L + V G AIG A + L T + K + I D
Sbjct: 146 AQLYMIDPSGVSYGYWG-CAIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEV 204
Query: 174 VYTNHNI 180
+
Sbjct: 205 KDKAFEL 211
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F*
1g65_F 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F*
3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 1g0u_F
Length = 244
Score = 44.2 bits (104), Expect = 2e-05
Identities = 26/199 (13%), Positives = 62/199 (31%), Gaps = 22/199 (11%)
Query: 10 AVKMHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAF 69
AV+ + TT + ++ + VV A + ++ V + N + +I ++G D
Sbjct: 26 AVE-NGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQV--VDRHIGCVYSGLIPDGR 82
Query: 70 TLLERLEKKLEQY---------PNQLLRSSVELAKDWRMDKYLRNLEAMILIA---DKTI 117
L+ R ++ + + + + +R +
Sbjct: 83 HLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGA 142
Query: 118 TLVITGMGDVLEPENGVMAIGSGGSYALSAARALMS------TQNSAEEIARKAMSIAAD 171
L + G A G G A + L+ + A + A K + +A +
Sbjct: 143 HLYMLEPSGSYWGYKG-AATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHE 201
Query: 172 ICVYTNHNIVLETLKVGDE 190
+ + + + +
Sbjct: 202 DNKEKDFELEISWCSLSET 220
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
Length = 233
Score = 42.6 bits (100), Expect = 5e-05
Identities = 26/180 (14%), Positives = 57/180 (31%), Gaps = 20/180 (11%)
Query: 9 YAVK--MHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSA 66
YA+ + ++ VV+A + + + + KV + K +I ++G
Sbjct: 23 YALAAVAGGAPSVGIKAANGVVLATEKKQKSI-LYDERSVHKVEPITK-HIGLVYSGMGP 80
Query: 67 DAFTLLERLEKKLEQY---------PNQLLRSSVELAKDWRMDKYLRNLEAMILIA---D 114
D L+ R K +QY QL++ + +++ +R +LI +
Sbjct: 81 DYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNE 140
Query: 115 KTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMS---TQNSAEEIARKAMSIAAD 171
L + A+G + + A A + + +
Sbjct: 141 GRPYLFQSDPSGAYFAWKAT-AMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFE 199
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B*
1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B*
3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3bdm_B*
1z7q_C* 2zcy_B* 1g0u_B 1fnt_C
Length = 244
Score = 42.4 bits (99), Expect = 7e-05
Identities = 35/198 (17%), Positives = 71/198 (35%), Gaps = 18/198 (9%)
Query: 9 YAVK--MHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSA 66
YA++ HA T + + +V+A + +V+ + K+ +L I AG +A
Sbjct: 23 YALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLND-KIAVAVAGLTA 81
Query: 67 DAFTLLERLEKKLEQY---------PNQLLRSSVELAKDWRMDKYLRNLEAMILIA---D 114
DA L+ + Y L+R ++ + + LR + A D
Sbjct: 82 DAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDD 141
Query: 115 KTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAEE---IARKAMSIAAD 171
+ + T +++G+ S A + + ++ +A K +S D
Sbjct: 142 RYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDDAIELALKTLSKTTD 201
Query: 172 ICVYTNHNIVLETLKVGD 189
T + T++ G
Sbjct: 202 SSALTYDRLEFATIRKGA 219
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
Length = 241
Score = 39.9 bits (93), Expect = 3e-04
Identities = 25/181 (13%), Positives = 59/181 (32%), Gaps = 22/181 (12%)
Query: 10 AVKMHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAF 69
A+K +T + ++ V +A + +++ + K+ + +I +G ADA
Sbjct: 30 AIK-LGSTAIGIQTSEGVCLAVEKRITSPLMEPS-SIEKIVEIDA-HIGCAMSGLIADAK 86
Query: 70 TLLERLEKKLEQYPNQLLRSSVELAKDWRMDKYL--------------RNLEAMILIA-- 113
TL+++ + + + + + + R +L
Sbjct: 87 TLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGV 146
Query: 114 DKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMS---TQNSAEEIARKAMSIAA 170
D+ + + AIGS A S+ + L T A + + +
Sbjct: 147 DEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQELYHKSMTLKEAIKSSLIILKQVM 206
Query: 171 D 171
+
Sbjct: 207 E 207
>3bdm_F Proteasome component C1; ubiquitin, proteolysis, pathogen,
virulence factor, cytoplasm, hydrolase, nucleus,
protease; HET: GDT; 2.70A {Saccharomyces cerevisiae}
SCOP: d.153.1.4 PDB: 1fnt_G* 2zcy_F* 1z7q_G
Length = 287
Score = 39.6 bits (92), Expect = 4e-04
Identities = 28/202 (13%), Positives = 63/202 (31%), Gaps = 23/202 (11%)
Query: 9 YAVKM--HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSA 66
YAVK + TT + ++ + VV A + ++ V + N + +I ++G
Sbjct: 25 YAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQV--VDRHIGCVYSGLIP 82
Query: 67 DAFTLLERLEKKLEQY---------PNQLLRSSVELAKDWRMDKYLRNLEAMILIA---D 114
D L+ R ++ + + + + +R +
Sbjct: 83 DGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK 142
Query: 115 KTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMS------TQNSAEEIARKAMSI 168
L + G A G G A + L+ + A + A K + +
Sbjct: 143 NGAHLYMLEPSGSYWGYKG-AATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYL 201
Query: 169 AADICVYTNHNIVLETLKVGDE 190
A + + + + + +
Sbjct: 202 AHEDNKEKDFELEISWCSLSET 223
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 39.2 bits (91), Expect = 6e-04
Identities = 40/211 (18%), Positives = 77/211 (36%), Gaps = 56/211 (26%)
Query: 6 DKH-YAVKMHA--TTILTVRKDGVVVIAGDGQVSLGQTVMKANA----RKVRRLGKGNII 58
D H A K+ T L K+ ++ ++ + K + R V G ++
Sbjct: 100 DIHALAAKLLQENDTTLVKTKE-LIKNYITARIMAKRPFDKKSNSALFRAVGE-GNAQLV 157
Query: 59 AGFAG--SSADAFT-----------LLERLEKKLEQYPNQLLRSSVELAKDWR---MD-- 100
A F G ++ D F L+ L K + ++L+R++++ A+ ++
Sbjct: 158 AIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLD-AEKVFTQGLNIL 216
Query: 101 KYLRNLEA-------------MILI-----ADKTITLVITGM--GDVLEPENGVMAIGSG 140
++L N LI A +T + G G++ G +G
Sbjct: 217 EWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA----TG 272
Query: 141 GSYALSAARALMSTQNSAE---EIARKAMSI 168
S L A ++ +S E RKA+++
Sbjct: 273 HSQGLVTA-VAIAETDSWESFFVSVRKAITV 302
Score = 31.8 bits (72), Expect = 0.089
Identities = 33/170 (19%), Positives = 51/170 (30%), Gaps = 66/170 (38%)
Query: 8 HYAVKMHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKG------NIIAGF 61
HY V T + LG T ++R KG ++
Sbjct: 248 HYVV--------TAK-------------LLGFTP-----GELRSYLKGATGHSQGLVTAV 281
Query: 62 AGSSADAFTLLERLEKK------------LEQYPNQLLRSSVELAKDWRMDKYLRNLEA- 108
A + D++ +K E YPN L S+ D L N E
Sbjct: 282 AIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSI------LEDS-LENNEGV 334
Query: 109 ---MILIADKTITLVITGMGDV---LEPENGVMAIGSGGSYAL-SAARAL 151
M+ I++ T V + L P + I +L + A+ L
Sbjct: 335 PSPMLSISNLTQEQVQDYVNKTNSHL-PAGKQVEI------SLVNGAKNL 377
Score = 31.5 bits (71), Expect = 0.11
Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 17/40 (42%)
Query: 10 AVKMHATTI-------------LTVR-KDG--V-VVIAGD 32
+ AT I LT R KDG V V++AG
Sbjct: 493 TTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGT 532
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, hydrolase; 2.60A {Rhodococcus
erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Length = 259
Score = 38.8 bits (90), Expect = 7e-04
Identities = 21/184 (11%), Positives = 42/184 (22%), Gaps = 30/184 (16%)
Query: 9 YAVK--MHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSA 66
A K +++ + V+ + + V + + G
Sbjct: 19 LARKGIARGRSVVVLTFRDGVLFVAENPSTALHKVSELY---------DRLGFAAVGKYN 69
Query: 67 DAFTLLERLEKKLEQY------PNQLLRSSVELAKDWRMDKY---LRNLEAMILIA---- 113
+ L + + RS + + E I +A
Sbjct: 70 EFENLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGR 129
Query: 114 ---DKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMS---TQNSAEEIARKAMS 167
K L + E + +G +A R +A IA A+
Sbjct: 130 VGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADLDLEAAVGIAVNALR 189
Query: 168 IAAD 171
Sbjct: 190 QGGA 193
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
Length = 246
Score = 38.4 bits (89), Expect = 0.001
Identities = 32/185 (17%), Positives = 55/185 (29%), Gaps = 12/185 (6%)
Query: 10 AVKMHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAF 69
A+ T + VR VI +V + ++ + NI G +AD+
Sbjct: 31 AINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSS-TVTHLFKITE-NIGCVMTGMTADSR 88
Query: 70 TLLERL--EKKLEQYPNQLLRSSVELAKDWR--MDKYLRNLEAMILIADKTITLVITGMG 125
+ ++R E +Y L K Y +N E L +++ G+
Sbjct: 89 SQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPL----GCCMILIGID 144
Query: 126 DVLEPENGVMAIGSGGSYALSAARALMSTQNSAEEIARKAMSIAADICVYTNHNIVLETL 185
+ P+ V G Y A A Q + K + D + L
Sbjct: 145 EEQGPQ--VYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCL 202
Query: 186 KVGDE 190
Sbjct: 203 STVLS 207
>3h6i_A Proteasome (alpha subunit) PRCA; binding sites, oxazolidin-2-ONE,
crystallography, X-RAY, protease inhibitors; 2.43A
{Mycobacterium tuberculosis} PDB: 3h6f_A 2fhh_A* 2fhg_A
3hfa_D 3hf9_A
Length = 248
Score = 38.4 bits (89), Expect = 0.001
Identities = 20/181 (11%), Positives = 49/181 (27%), Gaps = 29/181 (16%)
Query: 10 AVKMHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAF 69
+ A +++ + G V+ + + +K+ L + AG +
Sbjct: 23 GIA-RAKSVVALAYAGGVLFVAENPSR--------SLQKISELYD-RVGFAAAGKFNEFD 72
Query: 70 TLLERLEKKLEQY---------PNQLLRSSVELAKDWRMDKYLRNLEAMILIA------- 113
L + + + L + + + E + +A
Sbjct: 73 NLRRGGIQFADTRGYAYDRRDVTGRQLANVYAQTLGTIFTEQAKPYEVELCVAEVAHYGE 132
Query: 114 DKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMS---TQNSAEEIARKAMSIAA 170
K L + E + +G +A + + + A IA A+ +
Sbjct: 133 TKRPELYRITYDGSIADEPHFVVMGGTTEPIANALKESYAENASLTDALRIAVAALRAGS 192
Query: 171 D 171
Sbjct: 193 A 193
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E*
1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E*
3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3bdm_E*
1z7q_F 1fnt_F* 2zcy_E* 1g0u_E
Length = 233
Score = 36.6 bits (84), Expect = 0.003
Identities = 24/191 (12%), Positives = 57/191 (29%), Gaps = 27/191 (14%)
Query: 10 AVKMHATTILTVR-KDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADA 68
A+K + + +R V+ + + + + +K+ + + ++ AG + DA
Sbjct: 27 AIK-QGSVTVGLRSNTH-AVLVALKRNADE---LSSYQKKIIKCDE-HMGLSLAGLAPDA 80
Query: 69 FTLLERLEKKLEQY---------PNQLLRSSVELAKDWRMDKYLRNLEAMILIA---DKT 116
L L ++ + + A+ R +LI
Sbjct: 81 RVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSG 140
Query: 117 ITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMS-------TQNSAEEIARKAMSIA 169
L+ + G IG+ A + + + + +A+S +
Sbjct: 141 AHLLEFQPSGNVTELYGTA-IGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQS 199
Query: 170 ADICVYTNHNI 180
T N+
Sbjct: 200 LRDESLTVDNL 210
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C*
1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C*
3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3bdm_C*
1z7q_D 1fnt_D* 2zcy_C* 1g0u_C
Length = 241
Score = 33.5 bits (76), Expect = 0.029
Identities = 21/116 (18%), Positives = 47/116 (40%), Gaps = 12/116 (10%)
Query: 9 YAVK--MHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSA 66
YA++ T + V+ VV+ + + +L + KV ++ +++ F+G +A
Sbjct: 20 YALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDS-HVVLSFSGLNA 78
Query: 67 DAFTLLERLEKKLEQY---------PNQLLRSSVELAKDWRMDKYLRNLEAMILIA 113
D+ L+E+ + + + L R + + + +R LIA
Sbjct: 79 DSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIA 134
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome
endopeptidase comple mycobacterium tuberculosis,
hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis}
PDB: 3h6f_A 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A
3mfe_D
Length = 248
Score = 33.1 bits (75), Expect = 0.040
Identities = 25/184 (13%), Positives = 53/184 (28%), Gaps = 30/184 (16%)
Query: 9 YAVK--MHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSA 66
A K A +++ + G V+ + + +K+ L + AG
Sbjct: 19 LARKGIARAKSVVALAYAGGVLFVAENPSR--------SLQKISELYD-RVGFAAAGKFN 69
Query: 67 DAFTLLERLEKKLEQYPNQLLRSSV---ELAKDW------RMDKYLRNLEAMILIA---- 113
+ L + + R V +LA + + + E + +A
Sbjct: 70 EFDNLRRGGIQFADTRGYAYDRRDVTGRQLANVYAQTLGTIFTEQAKPYEVELCVAEVAH 129
Query: 114 ---DKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMS---TQNSAEEIARKAMS 167
K L + E + +G +A + + + A IA A+
Sbjct: 130 YGETKRPELYRITYDGSIADEPHFVVMGGTTEPIANALKESYAENASLTDALRIAVAALR 189
Query: 168 IAAD 171
+
Sbjct: 190 AGSA 193
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
Length = 263
Score = 33.1 bits (75), Expect = 0.046
Identities = 30/180 (16%), Positives = 55/180 (30%), Gaps = 25/180 (13%)
Query: 10 AVKMHATTILTVR-KDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADA 68
AVK + + ++ K V+ + + A+ +K+ + +I AG +ADA
Sbjct: 28 AVK-QGSATVGLKSKTH-AVLVALKRAQSE---LAAHQKKILHVDN-HIGISIAGLTADA 81
Query: 69 FTL---------LERLEKKLEQYPNQLLRSSVELAKDWRMDKYLRNLEAMILIA---DKT 116
L R ++L+ + R +LIA D
Sbjct: 82 RLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMG 141
Query: 117 ITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMS-----TQNSAEEIARKAMSIAAD 171
+ T M+IG+ A + MS N + +A+
Sbjct: 142 PHIFQTCPSANYFDCRA-MSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLP 200
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
Length = 248
Score = 31.9 bits (72), Expect = 0.082
Identities = 33/178 (18%), Positives = 56/178 (31%), Gaps = 26/178 (14%)
Query: 10 AVKMHATTILTVR-KDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADA 68
AVK +T + VR +D VV+ + + + + RK+ L N+ FAG +ADA
Sbjct: 25 AVK-KGSTAVGVRGRDI-VVLGVEKKSV-AKLQDERTVRKICALDD-NVCMAFAGLTADA 80
Query: 69 FTLLERLEKKL---------EQYPNQLLRSSVELAKDWRMDKYLRNLEAMILIA-----D 114
++ R + + R L + + R LI
Sbjct: 81 RIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDG 140
Query: 115 KTITLVITGMGDVLEPENGVMAIGSGGSYALSAARA-----LMSTQNSAEEIARKAMS 167
G + AIG G + T + ++ KA+
Sbjct: 141 TPRLYQTDPSGTYHAWK--ANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALL 196
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D*
1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D*
3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 2z5c_C
3bdm_D* 1z7q_E 1fnt_E* 2zcy_D* 1g0u_D
Length = 242
Score = 32.0 bits (72), Expect = 0.087
Identities = 11/76 (14%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Query: 9 YAVK--MHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSA 66
Y+++ +T + + VV+ + + + + K+ + + +I +G +A
Sbjct: 18 YSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESD-SIEKIVEIDR-HIGCAMSGLTA 75
Query: 67 DAFTLLERLEKKLEQY 82
DA +++E +
Sbjct: 76 DARSMIEHARTAAVTH 91
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator
11S, hydrolase/hydrolase activator complex; 1.90A
{Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A
1pma_A 3c91_A 3c92_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Length = 233
Score = 32.0 bits (72), Expect = 0.092
Identities = 19/160 (11%), Positives = 49/160 (30%), Gaps = 7/160 (4%)
Query: 9 YAVKM--HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSA 66
YA + +T L ++ V++ D +V + + + A +G A
Sbjct: 26 YAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQL--IDDYVAAVTSGLVA 83
Query: 67 DAFTLLERLEKKLEQYPNQLLRSSVELAKDWRMDKYLRNLEAMILIADKTITLVITGMGD 126
DA L++ +Q + + + + + ++ V
Sbjct: 84 DARVLVDFARISAQQE---KVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAG 140
Query: 127 VLEPENGVMAIGSGGSYALSAARALMSTQNSAEEIARKAM 166
+ + + G+ A A+ S +++ +
Sbjct: 141 IDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREY 180
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G*
1g65_G 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G*
3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 1g0u_G
1fnt_A 1z7q_A 2zcy_G* 3bdm_G*
Length = 243
Score = 30.9 bits (69), Expect = 0.17
Identities = 11/73 (15%), Positives = 22/73 (30%), Gaps = 2/73 (2%)
Query: 10 AVKMHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAF 69
A L VR V+ +V + + + + + I G DA
Sbjct: 25 ATNQTNINSLAVRGKDCTVVISQKKVP-DKLLDPTTVSYIFCISR-TIGMVVNGPIPDAR 82
Query: 70 TLLERLEKKLEQY 82
R + + ++
Sbjct: 83 NAALRAKAEAAEF 95
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.0 bits (66), Expect = 0.33
Identities = 6/26 (23%), Positives = 15/26 (57%), Gaps = 5/26 (19%)
Query: 72 LERLEKKLEQY-----PNQLLRSSVE 92
L++L+ L+ Y P +++++E
Sbjct: 22 LKKLQASLKLYADDSAPALAIKATME 47
Score = 26.5 bits (57), Expect = 3.7
Identities = 8/23 (34%), Positives = 15/23 (65%), Gaps = 7/23 (30%)
Query: 76 EKK-LEQYPNQLLRSSVEL-AKD 96
EK+ L++ L++S++L A D
Sbjct: 18 EKQALKK-----LQASLKLYADD 35
>3f9u_A Putative exported cytochrome C biogenesis- related protein;
structural genomics, PSI-2, protein structure
initiative; 2.20A {Bacteroides fragilis nctc 9343}
Length = 172
Score = 27.1 bits (59), Expect = 2.5
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 54 KGNIIAGFAGSSADAFTLLERLEKKLEQYPNQ 85
+GN + D + L+ LE Y +
Sbjct: 140 EGNPLNKSYAYDEDISKYINFLQTGLENYRKE 171
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation
initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1
c.65.1.1 PDB: 2fmt_A*
Length = 314
Score = 27.2 bits (60), Expect = 2.6
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 17 TILTVRKDGVVVIAGDGQVSLGQ 39
TIL K G+ V GDG ++L
Sbjct: 263 TILEANKQGIQVATGDGILNLLS 285
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded
DNA, transcription/DNA complex; 1.73A {Homo sapiens}
SCOP: b.40.4.3 b.40.4.3
Length = 294
Score = 26.4 bits (58), Expect = 3.9
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 164 KAMSIAADICVYTNHNIVLETLKVGD 189
+ ++I DI VY NH V +LKVG
Sbjct: 209 QNLTI--DILVYDNHVHVARSLKVGS 232
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form,
glycosyltransferase; HET: PLP; 2.80A {Saccharomyces
cerevisiae} SCOP: c.87.1.4
Length = 879
Score = 26.5 bits (58), Expect = 4.0
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 164 KAMSIAADICVYTNHNIVLETLKVGD 189
+A I YTNH ++ E L+
Sbjct: 391 EAWDIVTKTFAYTNHTVMQEALEKWP 416
>3gzd_A HSCL, selenocysteine lyase; structural genomics, SCLY, human,
pyridoxal-5'-phosphate, PLP, structural genomics
consortium SGC; HET: PLR; 1.80A {Homo sapiens} PDB:
3gzc_A* 2hdy_A*
Length = 440
Score = 25.7 bits (55), Expect = 6.1
Identities = 9/63 (14%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
Query: 105 NLEAMILIADKTITLVITGM----GDVLEPENGVMAIGSGGSYALSAARALMSTQNSAEE 160
L+ +++A + + G +P +++ G A +A R + + E
Sbjct: 362 RLQGHVVLAQCRVLMASVGAACHSDHGDQPSPVLLSYGVPFDVARNALRLSVGRSTTRAE 421
Query: 161 IAR 163
+
Sbjct: 422 VDL 424
>2cpm_A Sperm-associated antigen 7; R3H domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 25.6 bits (56), Expect = 6.6
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 60 GFAGSSADAFTLLERLEKKLEQYPNQLLRSSVELAKDWRMDKYLR 104
G +GSS +R+EK++ + + + M+K R
Sbjct: 1 GSSGSSGQKVEFRKRMEKEVSDFIQDSGQIKKKFQ---PMNKIER 42
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 25.5 bits (55), Expect = 6.8
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 23 KDGVVVIAGDGQVSLGQTVMKA 44
KD V+I G G+ S+G V++
Sbjct: 475 KDKYVLITGAGKGSIGAEVLQG 496
>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}
Length = 174
Score = 25.7 bits (56), Expect = 7.3
Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 5/52 (9%)
Query: 98 RMDKYLRNLEAMILIADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAAR 149
R+D ++ + + + I G V E + +G+G +Y
Sbjct: 15 RLDLFIDRMVSQRACLEHAIAQTAGLSGPVYE-----LGLGNGRTYHHLRQH 61
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B
1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A*
2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A*
3gpj_A* 3gpt_A* 3gpw_A* 3hye_A*
Length = 250
Score = 25.5 bits (55), Expect = 8.5
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 10 AVKMHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAF 69
AVK T L ++ VVIA + + S + + KV L +I A ++G D
Sbjct: 27 AVK-QGVTSLGIKATNGVVIATEKKSSSPLAMSE-TLSKVSLLTP-DIGAVYSGMGPDYR 83
Query: 70 TLLER 74
L+++
Sbjct: 84 VLVDK 88
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.317 0.132 0.358
Gapped
Lambda K H
0.267 0.0539 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,559,450
Number of extensions: 70161
Number of successful extensions: 408
Number of sequences better than 10.0: 1
Number of HSP's gapped: 355
Number of HSP's successfully gapped: 66
Length of query: 190
Length of database: 5,693,230
Length adjustment: 87
Effective length of query: 103
Effective length of database: 3,584,002
Effective search space: 369152206
Effective search space used: 369152206
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.0 bits)