BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780828|ref|YP_003065241.1| ATP-dependent protease peptidase subunit [Candidatus Liberibacter asiaticus str. psy62] (190 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780828|ref|YP_003065241.1| ATP-dependent protease peptidase subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 190 Score = 385 bits (990), Expect = e-109, Method: Compositional matrix adjust. Identities = 190/190 (100%), Positives = 190/190 (100%) Query: 1 MVVMGDKHYAVKMHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAG 60 MVVMGDKHYAVKMHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAG Sbjct: 1 MVVMGDKHYAVKMHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAG 60 Query: 61 FAGSSADAFTLLERLEKKLEQYPNQLLRSSVELAKDWRMDKYLRNLEAMILIADKTITLV 120 FAGSSADAFTLLERLEKKLEQYPNQLLRSSVELAKDWRMDKYLRNLEAMILIADKTITLV Sbjct: 61 FAGSSADAFTLLERLEKKLEQYPNQLLRSSVELAKDWRMDKYLRNLEAMILIADKTITLV 120 Query: 121 ITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAEEIARKAMSIAADICVYTNHNI 180 ITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAEEIARKAMSIAADICVYTNHNI Sbjct: 121 ITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAEEIARKAMSIAADICVYTNHNI 180 Query: 181 VLETLKVGDE 190 VLETLKVGDE Sbjct: 181 VLETLKVGDE 190 >gi|254781005|ref|YP_003065418.1| hypothetical protein CLIBASIA_04530 [Candidatus Liberibacter asiaticus str. psy62] Length = 85 Score = 26.6 bits (57), Expect = 0.27, Method: Compositional matrix adjust. Identities = 9/35 (25%), Positives = 25/35 (71%) Query: 105 NLEAMILIADKTITLVITGMGDVLEPENGVMAIGS 139 +++ +I+ + + T++++G + L+PENG+ +G+ Sbjct: 2 DIKGLIVASLISSTVIMSGCSETLDPENGIRELGA 36 >gi|254780264|ref|YP_003064677.1| elongation factor G [Candidatus Liberibacter asiaticus str. psy62] Length = 701 Score = 26.2 bits (56), Expect = 0.39, Method: Compositional matrix adjust. Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%) Query: 63 GSSADAFTLLERLEKKLEQYPNQLLRSSVELAKDWRMDKYLR 104 GSS D + E ++ Y ++++ S VEL D MD YL+ Sbjct: 197 GSSWDVVEIPEDMKDSANSYRDKMIESIVEL-DDSAMDSYLQ 237 >gi|254780348|ref|YP_003064761.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase/diaminohydroxyphosphoribosylaminopyrimidine [Candidatus Liberibacter asiaticus str. psy62] Length = 364 Score = 23.9 bits (50), Expect = 1.8, Method: Compositional matrix adjust. Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 2/91 (2%) Query: 12 KMHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTL 71 + H T + V +D ++ +AG G V + + K N + R I+ G AD L Sbjct: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISK-NQVHLLRAQSDAILVGIGTVLADDPEL 207 Query: 72 LERLEKKLEQYPNQ-LLRSSVELAKDWRMDK 101 RL E P + +L +L+ D ++ K Sbjct: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.317 0.132 0.358 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 103,835 Number of Sequences: 1233 Number of extensions: 3601 Number of successful extensions: 16 Number of sequences better than 100.0: 6 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 11 Number of HSP's gapped (non-prelim): 6 length of query: 190 length of database: 328,796 effective HSP length: 69 effective length of query: 121 effective length of database: 243,719 effective search space: 29489999 effective search space used: 29489999 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 36 (18.5 bits)