BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780828|ref|YP_003065241.1| ATP-dependent protease
peptidase subunit [Candidatus Liberibacter asiaticus str. psy62]
         (190 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780828|ref|YP_003065241.1| ATP-dependent protease peptidase subunit [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 190

 Score =  385 bits (990), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 190/190 (100%), Positives = 190/190 (100%)

Query: 1   MVVMGDKHYAVKMHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAG 60
           MVVMGDKHYAVKMHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAG
Sbjct: 1   MVVMGDKHYAVKMHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAG 60

Query: 61  FAGSSADAFTLLERLEKKLEQYPNQLLRSSVELAKDWRMDKYLRNLEAMILIADKTITLV 120
           FAGSSADAFTLLERLEKKLEQYPNQLLRSSVELAKDWRMDKYLRNLEAMILIADKTITLV
Sbjct: 61  FAGSSADAFTLLERLEKKLEQYPNQLLRSSVELAKDWRMDKYLRNLEAMILIADKTITLV 120

Query: 121 ITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAEEIARKAMSIAADICVYTNHNI 180
           ITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAEEIARKAMSIAADICVYTNHNI
Sbjct: 121 ITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAEEIARKAMSIAADICVYTNHNI 180

Query: 181 VLETLKVGDE 190
           VLETLKVGDE
Sbjct: 181 VLETLKVGDE 190


>gi|254781005|ref|YP_003065418.1| hypothetical protein CLIBASIA_04530 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 85

 Score = 26.6 bits (57), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 9/35 (25%), Positives = 25/35 (71%)

Query: 105 NLEAMILIADKTITLVITGMGDVLEPENGVMAIGS 139
           +++ +I+ +  + T++++G  + L+PENG+  +G+
Sbjct: 2   DIKGLIVASLISSTVIMSGCSETLDPENGIRELGA 36


>gi|254780264|ref|YP_003064677.1| elongation factor G [Candidatus Liberibacter asiaticus str. psy62]
          Length = 701

 Score = 26.2 bits (56), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 63  GSSADAFTLLERLEKKLEQYPNQLLRSSVELAKDWRMDKYLR 104
           GSS D   + E ++     Y ++++ S VEL  D  MD YL+
Sbjct: 197 GSSWDVVEIPEDMKDSANSYRDKMIESIVEL-DDSAMDSYLQ 237


>gi|254780348|ref|YP_003064761.1| 5-amino-6-(5-phosphoribosylamino)uracil
           reductase/diaminohydroxyphosphoribosylaminopyrimidine
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 364

 Score = 23.9 bits (50), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 2/91 (2%)

Query: 12  KMHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTL 71
           + H T  + V +D ++ +AG G V +   + K N   + R     I+ G     AD   L
Sbjct: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISK-NQVHLLRAQSDAILVGIGTVLADDPEL 207

Query: 72  LERLEKKLEQYPNQ-LLRSSVELAKDWRMDK 101
             RL    E  P + +L    +L+ D ++ K
Sbjct: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.317    0.132    0.358 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,835
Number of Sequences: 1233
Number of extensions: 3601
Number of successful extensions: 16
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 6
length of query: 190
length of database: 328,796
effective HSP length: 69
effective length of query: 121
effective length of database: 243,719
effective search space: 29489999
effective search space used: 29489999
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)