HHsearch alignment for GI: 254780829 and conserved domain: CHL00095
>CHL00095 clpC Clp protease ATP binding subunit.
Probab=98.04 E-value=0.00028 Score=47.18 Aligned_cols=98 Identities=22% Similarity=0.385 Sum_probs=53.8
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHH---CCC-------EEEEECCCEE-ECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 66866996798886899999999970---787-------7971434101-212234310134678887652127899856
Q gi|254780829|r 52 MPKNILLVGPTGVGKTAISRRLARLA---GAP-------FIKVEVTKFT-EIGYVGRNVEQIIRDLVDVAINIVRESRRD 120 (437)
Q Consensus 52 ~psNiLLiGPtGtGKTlLAktLA~~l---~VP-------F~~~daT~ft-E~gyvG~DVes~i~~l~~~a~~~~~~a~~~ 120 (437)
T Consensus 199 ~KNNpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~sLDl~~L~AGtkyRGe-FEeRlk~il~ei~~---~~~iI 274 (823)
T CHL00095 199 TKNNPILIGEPGVGKTAIAEGLAQRIANRDVPDILEDKLVLTLDIGLLLAGTKYRGE-FEERIKKIMDEIKK---ANNII 274 (823)
T ss_pred CCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEHHHHHHCCCCCHH-HHHHHHHHHHHHHH---CCCEE
T ss_conf 248850237999879999999999760889986875993688428877533422267-99999999999985---79869
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 549888868887555531143211004668988986168
Q gi|254780829|r 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGE 159 (437)
Q Consensus 121 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (437)
T Consensus 275 LFIDEiHt-----lvGaG~~-~g~~DaaNlLKPaLarGe 307 (823)
T CHL00095 275 LVIDEIHT-----LIGAGAA-EGAIDAANILKPALARGK 307 (823)
T ss_pred EEECCHHH-----HCCCCCC-CCCHHHHHHHHHHHHCCC
T ss_conf 99735165-----3288976-664317887657864898