HHsearch alignment for GI: 254780829 and conserved domain: CHL00181

Probab=99.36  E-value=1e-10  Score=88.86  Aligned_cols=89  Identities=24%  Similarity=0.348  Sum_probs=60.5

Q ss_pred             CHHHHHHHHHHCEECHHHHHHHHHH---HHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH-------
Q ss_conf             8899999862030486899999999---998778864086444466566866996798886899999999970-------
Q gi|254780829|r    8 SPREIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA-------   77 (437)
Q Consensus         8 tP~~i~~~Ld~~VvGQ~~AKk~lav---av~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l-------   77 (437)
T Consensus        13 ~lee~L~eLd~eliGL~~VK~~v~~l~~~~~~~~~R~~~--Gl~~~~~s~h~vF~GnPGTGKTTVARl~a~il~~lG~L~   90 (287)
T CHL00181         13 QIQEVLDELDEELIGLVPVKTRIREIAALLLVDRLRKNL--GLVSSSPGLHMSFTGSPGTGKTTVALKMADILYRLGYIK   90 (287)
T ss_pred             CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf             499999999886469699999999999999999999987--999888765388878998679999999999999869955


Q ss_pred             CCCEEEEECCCEEECCCCCCCH
Q ss_conf             7877971434101212234310
Q gi|254780829|r   78 GAPFIKVEVTKFTEIGYVGRNV   99 (437)
Q Consensus        78 ~VPF~~~daT~ftE~gyvG~DV   99 (437)
T Consensus        91 ~g~vve~~r~dLv-g~yvG~Ta  111 (287)
T CHL00181         91 KGHLITVTRDDLV-GQYIGHTA  111 (287)
T ss_pred             CCEEEEECHHHHC-CCCCCCCH
T ss_conf             8958995358841-63535216