HHsearch alignment for GI: 254780829 and conserved domain: COG0542
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].
Probab=99.97 E-value=3.6e-31 Score=221.54 Aligned_cols=275 Identities=24% Similarity=0.355 Sum_probs=181.1
Q ss_pred HHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CEEEECCCCCCHHHHHHHHHHHHC---CCEEEE
Q ss_conf 8999998620304868999999999987788640864444665668-669967988868999999999707---877971
Q gi|254780829|r 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRLARLAG---APFIKV 84 (437)
Q Consensus 9 P~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~ps-NiLLiGPtGtGKTlLAktLA~~l~---VPF~~~ 84 (437)
T Consensus 482 ll~le~~L~~rViGQd~AV~~v~~aI----rraRa--GL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~ 555 (786)
T COG0542 482 LLNLERRLKKRVIGQDEAVEAVSDAI----RRARA--GLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRI 555 (786)
T ss_pred HHHHHHHHHCCEECHHHHHHHHHHHH----HHHHC--CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 98679997365017399999999999----99856--9999998735788667886569999999999965997444554
Q ss_pred ECCCEEE-----------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 4341012-----------12234310134678887652127899856549888868887555531143211004668988
Q gi|254780829|r 85 EVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRK 153 (437)
Q Consensus 85 daT~ftE-----------~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (437)
T Consensus 556 DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEa-------VRr~PySV----iLlDEIEK---------AHpdV~nilLQ 615 (786)
T COG0542 556 DMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEA-------VRRKPYSV----ILLDEIEK---------AHPDVFNLLLQ 615 (786)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCEECCCCCHHHH-------HHCCCCEE----EEECHHHH---------CCHHHHHHHHH
T ss_conf 568777787799872799987200655400376-------60699868----88412644---------08899999999
Q ss_pred HHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 98616888854998753554554433466766632100011010013543221000001023553327888630310111
Q gi|254780829|r 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233 (437)
Q Consensus 154 ~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 233 (437)
T Consensus 616 VlDdGrLTD~~Gr~-------------------VdFrNtiIImTSN~G-------------------s~~i~~~~----- 652 (786)
T COG0542 616 VLDDGRLTDGQGRT-------------------VDFRNTIIIMTSNAG-------------------SEEILRDA----- 652 (786)
T ss_pred HHCCCCEECCCCCE-------------------EECCEEEEEEECCCC-------------------HHHHHHHC-----
T ss_conf 84678055489988-------------------843002899845026-------------------59897531-----
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCC
Q ss_conf 23678887532221002221001357665654332101223432046652211246664202466401675422112125
Q gi|254780829|r 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLL 313 (437)
Q Consensus 234 ~~~a~~~~~~~~~~f~~~~~ki~~~~~~~~~~~~~~g~~~~~~~~~e~~~v~~~~~~~~~~~~~~i~~~~~~~~k~~gli 313 (437)
T Consensus 653 -----------~--------------~--~~~~~~~~~~~~v--------------------~~~l---------~~~F~ 676 (786)
T COG0542 653 -----------D--------------G--DDFADKEALKEAV--------------------MEEL---------KKHFR 676 (786)
T ss_pred -----------C--------------C--CCCCHHHHHHHHH--------------------HHHH---------HHHCC
T ss_conf -----------3--------------4--3210046788999--------------------9999---------85389
Q ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 54334512688615542467888764346889999999987519689984249999999999840400123724679999
Q gi|254780829|r 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393 (437)
Q Consensus 314 pE~~GR~p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~LrtI~ 393 (437)
T Consensus 677 PEFLNRid~II~F~~L~~~~l~~Iv~~----~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd-----~~~GARpL~R~I 747 (786)
T COG0542 677 PEFLNRIDEIIPFNPLSKEVLERIVDL----QLNRLAKRLAERGITLELSDEAKDFLAEKGYD-----PEYGARPLRRAI 747 (786)
T ss_pred HHHHHHCCCEEECCCCCHHHHHHHHHH----HHHHHHHHHHHCCCEEEECHHHHHHHHHHCCC-----CCCCCHHHHHHH
T ss_conf 989851261785067998999999999----99999999986895599888999999996468-----776736799999
Q ss_pred HHHHHHHHCC----CCCCCCCEEEECHH
Q ss_conf 9986776212----75687768998599
Q gi|254780829|r 394 ERVLEDISFS----ASDLQEKTVVIDAE 417 (437)
Q Consensus 394 E~~l~d~~fe----~p~~~~~~v~Id~~ 417 (437)
T Consensus 748 q~~i~~~La~~iL~~~~~~~~~v~v~~~ 775 (786)
T COG0542 748 QQEIEDPLADEILFGKIEDGGTVKVDVD 775 (786)
T ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEEEC
T ss_conf 9999899999998466579967999951