HHsearch alignment for GI: 254780829 and conserved domain: COG1219
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones].
Probab=97.42 E-value=3.1e-05 Score=53.38 Aligned_cols=69 Identities=38% Similarity=0.612 Sum_probs=57.6
Q ss_pred HHHHHHHHHCCCCCHHCCCCCCCC--CCCCCCCHHHHHHHCCCCCCCCCC-----------CCCCCCCHHHHHHCCCCCC
Q ss_conf 875322210022210013576656--543321012234320466522112-----------4666420246640167542
Q gi|254780829|r 240 MVENYGIVFLDEFDKIVARDSGNG--IGVSREGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAFHV 306 (437)
Q Consensus 240 ~~~~~~~~f~~~~~ki~~~~~~~~--~~~~~~g~~~~~~~~~e~~~v~~~-----------~~~~~~~~~~~i~~~~~~~ 306 (437)
T Consensus 159 ~rAerGIIyIDEIDKIarkSen~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~G 238 (408)
T COG1219 159 ERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAG 238 (408)
T ss_pred HHHHCCEEEEECHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCCCCCCCCEEEECCCCEEEEECCCCCC
T ss_conf 88828859985102542057898723436735899999999707510239998887984204887376346782440103
Q ss_pred CC
Q ss_conf 21
Q gi|254780829|r 307 SR 308 (437)
Q Consensus 307 ~k 308 (437)
T Consensus 239 le 240 (408)
T COG1219 239 LE 240 (408)
T ss_pred HH
T ss_conf 99