HHsearch alignment for GI: 254780829 and conserved domain: COG1221

>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms].
Probab=97.73  E-value=3.5e-05  Score=53.03  Aligned_cols=40  Identities=35%  Similarity=0.585  Sum_probs=35.6

Q ss_pred             CCEEEECCCCCCHHHHHHHHHHH----HCCCEEEEECCCEEECC
Q ss_conf             86699679888689999999997----07877971434101212
Q gi|254780829|r   54 KNILLVGPTGVGKTAISRRLARL----AGAPFIKVEVTKFTEIG   93 (437)
Q Consensus        54 sNiLLiGPtGtGKTlLAktLA~~----l~VPF~~~daT~ftE~g   93 (437)
T Consensus       102 ~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~  145 (403)
T COG1221         102 LPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENL  145 (403)
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEHHHHCCCH
T ss_conf             84798668875388999999986121358987997777737677