HHsearch alignment for GI: 254780829 and conserved domain: COG1221
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms].
Probab=97.73 E-value=3.5e-05 Score=53.03 Aligned_cols=40 Identities=35% Similarity=0.585 Sum_probs=35.6
Q ss_pred CCEEEECCCCCCHHHHHHHHHHH----HCCCEEEEECCCEEECC
Q ss_conf 86699679888689999999997----07877971434101212
Q gi|254780829|r 54 KNILLVGPTGVGKTAISRRLARL----AGAPFIKVEVTKFTEIG 93 (437)
Q Consensus 54 sNiLLiGPtGtGKTlLAktLA~~----l~VPF~~~daT~ftE~g 93 (437)
T Consensus 102 ~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~ 145 (403)
T COG1221 102 LPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENL 145 (403)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEHHHHCCCH
T ss_conf 84798668875388999999986121358987997777737677