HHsearch alignment for GI: 254780829 and conserved domain: COG2256
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair].
Probab=99.08 E-value=2.1e-09 Score=80.43 Aligned_cols=119 Identities=18% Similarity=0.245 Sum_probs=74.0
Q ss_pred CCCCCHHHHHHHHHHCEECHHHHH---HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 676888999998620304868999---99999998778864086444466566866996798886899999999970787
Q gi|254780829|r 4 TFNFSPREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80 (437)
Q Consensus 4 ~~~ltP~~i~~~Ld~~VvGQ~~AK---k~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VP 80 (437)
T Consensus 15 A~rmRP~~l----de~-vGQ~HLlg~~~~lrr~v~-------~-~------~l~SmIl~GPPG~GKTTlA~liA~~~~~~ 75 (436)
T COG2256 15 AERLRPKSL----DEV-VGQEHLLGEGKPLRRAVE-------A-G------HLHSMILWGPPGTGKTTLARLIAGTTNAA 75 (436)
T ss_pred HHHHCCCCH----HHH-CCHHHHHCCCCHHHHHHH-------C-C------CCCEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 777097778----785-571866189943899996-------4-9------98605777899988889999998761776
Q ss_pred EEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 79714341012122343101346788876521278998----56549888868887555531143211004668988986
Q gi|254780829|r 81 FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLR 156 (437)
Q Consensus 81 F~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 156 (437)
T Consensus 76 f~~~sAv~~------------gvkdlr~i~e~a~~~~~~gr~tiLflDE-------------------IHRfnK~QQD~l 124 (436)
T COG2256 76 FEALSAVTS------------GVKDLREIIEEARKNRLLGRRTILFLDE-------------------IHRFNKAQQDAL 124 (436)
T ss_pred EEEECCCCC------------CHHHHHHHHHHHHHHHHCCCCEEEEEEH-------------------HHHCCHHHHHHH
T ss_conf 699515234------------6799999999999987258834998722-------------------533374456551
Q ss_pred HCCCCCCEEEEEECCC
Q ss_conf 1688885499875355
Q gi|254780829|r 157 DGEISDKEIDIEVADT 172 (437)
Q Consensus 157 ~~~~~~~~i~i~~~~~ 172 (437)
T Consensus 125 Lp~vE~G~iilIGATT 140 (436)
T COG2256 125 LPHVENGTIILIGATT 140 (436)
T ss_pred HHHHCCCEEEEEECCC
T ss_conf 0332488689996267