HHsearch alignment for GI: 254780829 and conserved domain: COG2256

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair].
Probab=99.08  E-value=2.1e-09  Score=80.43  Aligned_cols=119  Identities=18%  Similarity=0.245  Sum_probs=74.0

Q ss_pred             CCCCCHHHHHHHHHHCEECHHHHH---HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf             676888999998620304868999---99999998778864086444466566866996798886899999999970787
Q gi|254780829|r    4 TFNFSPREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP   80 (437)
Q Consensus         4 ~~~ltP~~i~~~Ld~~VvGQ~~AK---k~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VP   80 (437)
T Consensus        15 A~rmRP~~l----de~-vGQ~HLlg~~~~lrr~v~-------~-~------~l~SmIl~GPPG~GKTTlA~liA~~~~~~   75 (436)
T COG2256          15 AERLRPKSL----DEV-VGQEHLLGEGKPLRRAVE-------A-G------HLHSMILWGPPGTGKTTLARLIAGTTNAA   75 (436)
T ss_pred             HHHHCCCCH----HHH-CCHHHHHCCCCHHHHHHH-------C-C------CCCEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf             777097778----785-571866189943899996-------4-9------98605777899988889999998761776


Q ss_pred             EEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf             79714341012122343101346788876521278998----56549888868887555531143211004668988986
Q gi|254780829|r   81 FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLR  156 (437)
Q Consensus        81 F~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  156 (437)
T Consensus        76 f~~~sAv~~------------gvkdlr~i~e~a~~~~~~gr~tiLflDE-------------------IHRfnK~QQD~l  124 (436)
T COG2256          76 FEALSAVTS------------GVKDLREIIEEARKNRLLGRRTILFLDE-------------------IHRFNKAQQDAL  124 (436)
T ss_pred             EEEECCCCC------------CHHHHHHHHHHHHHHHHCCCCEEEEEEH-------------------HHHCCHHHHHHH
T ss_conf             699515234------------6799999999999987258834998722-------------------533374456551


Q ss_pred             HCCCCCCEEEEEECCC
Q ss_conf             1688885499875355
Q gi|254780829|r  157 DGEISDKEIDIEVADT  172 (437)
Q Consensus       157 ~~~~~~~~i~i~~~~~  172 (437)
T Consensus       125 Lp~vE~G~iilIGATT  140 (436)
T COG2256         125 LPHVENGTIILIGATT  140 (436)
T ss_pred             HHHHCCCEEEEEECCC
T ss_conf             0332488689996267