HHsearch alignment for GI: 254780829 and conserved domain: PRK00440
>PRK00440 rfc replication factor C small subunit; Reviewed.
Probab=98.39 E-value=9.6e-07 Score=63.13 Aligned_cols=49 Identities=31% Similarity=0.515 Sum_probs=38.6
Q ss_pred HHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 8620304868999999999987788640864444665668669967988868999999999707
Q gi|254780829|r 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 15 ~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~ 78 (437)
T Consensus 14 ~l~d-i~g~~~~~~~L~~~i~~-------------~~~-phlLf~GppG~GKTt~a~~la~~l~ 62 (318)
T PRK00440 14 SLDE-VVGQEEIVERLKSFVKE-------------KNM-PHLLFAGPPGTGKTTAALALARELY 62 (318)
T ss_pred CHHH-HCCCHHHHHHHHHHHHC-------------CCC-CEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 8999-41969999999999987-------------998-6698889599889999999999976