HHsearch alignment for GI: 254780829 and conserved domain: PRK03992
>PRK03992 proteasome-activating nucleotidase; Provisional.
Probab=99.93 E-value=3.2e-26 Score=189.40 Aligned_cols=246 Identities=15% Similarity=0.083 Sum_probs=175.1
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCC
Q ss_conf 30486899999999998778864086444466566866996798886899999999970787797143410121223431
Q gi|254780829|r 19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN 98 (437)
Q Consensus 19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~D 98 (437)
T Consensus 133 dIGGl~~~k~el~E~velPl~~pe~f~~~G-i~pPkGvLLyGPPGtGKTllAkAvA~e~~~~fi~v~~s~l~sk-~vGes 210 (390)
T PRK03992 133 DIGGLDEQIREVREAVELPLKNPELFEEVG-IEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQK-FIGEG 210 (390)
T ss_pred HHCCHHHHHHHHHHHHHHHHHCHHHHHHCC-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHHC-CCCHH
T ss_conf 614989999999999999865989999769-9999727868989997899999999874888799667997524-54179
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCC
Q ss_conf 01346788876521278998565498888688875555311432110046689889861688885499875355455443
Q gi|254780829|r 99 VEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178 (437)
Q Consensus 99 Ves~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~ 178 (437)
T Consensus 211 ----ek~vr~lF~~Ar~~aP~IiFiDEiDai~~~R~~~~~~g~~ev~r~l~qLL~emDG~~~~~~V~VIaATNrpd~LDp 286 (390)
T PRK03992 211 ----ARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRPDILDP 286 (390)
T ss_pred ----HHHHHHHHHHHHHHCCCEEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHCCH
T ss_conf ----9999999999997099089714325663356778886208899999999997448777788279960698100597
Q ss_pred CCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHCCC
Q ss_conf 34667666321000110100135432210000010235533278886303101112367888753222100222100135
Q gi|254780829|r 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVAR 258 (437)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~~~ki~~~ 258 (437)
T Consensus 287 Al--lRpGRFDr~I~iplPd~~~R~~Ilki~~~~~~l~~dvdl~~lA~~T~G~SGADI~~lc~EA~m~Air~~r~~i~~~ 364 (390)
T PRK03992 287 AL--LRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTEVTME 364 (390)
T ss_pred HH--HCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 77--5477652388708949999999999984799999888999999768799899999999999999998589860899
Q ss_pred CCCCCCCCCCCCHH
Q ss_conf 76656543321012
Q gi|254780829|r 259 DSGNGIGVSREGVQ 272 (437)
Q Consensus 259 ~~~~~~~~~~~g~~ 272 (437)
T Consensus 365 Df~~Ai~kv~~~~~ 378 (390)
T PRK03992 365 DFLKAIEKVMGKEE 378 (390)
T ss_pred HHHHHHHHHHCCCC
T ss_conf 99999999967865