HHsearch alignment for GI: 254780829 and conserved domain: PRK03992

>PRK03992 proteasome-activating nucleotidase; Provisional.
Probab=99.93  E-value=3.2e-26  Score=189.40  Aligned_cols=246  Identities=15%  Similarity=0.083  Sum_probs=175.1

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCC
Q ss_conf             30486899999999998778864086444466566866996798886899999999970787797143410121223431
Q gi|254780829|r   19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN   98 (437)
Q Consensus        19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~D   98 (437)
T Consensus       133 dIGGl~~~k~el~E~velPl~~pe~f~~~G-i~pPkGvLLyGPPGtGKTllAkAvA~e~~~~fi~v~~s~l~sk-~vGes  210 (390)
T PRK03992        133 DIGGLDEQIREVREAVELPLKNPELFEEVG-IEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQK-FIGEG  210 (390)
T ss_pred             HHCCHHHHHHHHHHHHHHHHHCHHHHHHCC-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHHC-CCCHH
T ss_conf             614989999999999999865989999769-9999727868989997899999999874888799667997524-54179


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCC
Q ss_conf             01346788876521278998565498888688875555311432110046689889861688885499875355455443
Q gi|254780829|r   99 VEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN  178 (437)
Q Consensus        99 Ves~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~  178 (437)
T Consensus       211 ----ek~vr~lF~~Ar~~aP~IiFiDEiDai~~~R~~~~~~g~~ev~r~l~qLL~emDG~~~~~~V~VIaATNrpd~LDp  286 (390)
T PRK03992        211 ----ARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRPDILDP  286 (390)
T ss_pred             ----HHHHHHHHHHHHHHCCCEEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHCCH
T ss_conf             ----9999999999997099089714325663356778886208899999999997448777788279960698100597


Q ss_pred             CCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHCCC
Q ss_conf             34667666321000110100135432210000010235533278886303101112367888753222100222100135
Q gi|254780829|r  179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVAR  258 (437)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~~~ki~~~  258 (437)
T Consensus       287 Al--lRpGRFDr~I~iplPd~~~R~~Ilki~~~~~~l~~dvdl~~lA~~T~G~SGADI~~lc~EA~m~Air~~r~~i~~~  364 (390)
T PRK03992        287 AL--LRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTEVTME  364 (390)
T ss_pred             HH--HCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf             77--5477652388708949999999999984799999888999999768799899999999999999998589860899


Q ss_pred             CCCCCCCCCCCCHH
Q ss_conf             76656543321012
Q gi|254780829|r  259 DSGNGIGVSREGVQ  272 (437)
Q Consensus       259 ~~~~~~~~~~~g~~  272 (437)
T Consensus       365 Df~~Ai~kv~~~~~  378 (390)
T PRK03992        365 DFLKAIEKVMGKEE  378 (390)
T ss_pred             HHHHHHHHHHCCCC
T ss_conf             99999999967865