HHsearch alignment for GI: 254780829 and conserved domain: PRK05201
>PRK05201 hslU ATP-dependent protease ATP-binding subunit; Provisional.
Probab=100.00 E-value=0 Score=859.73 Aligned_cols=430 Identities=57% Similarity=0.923 Sum_probs=400.9
Q ss_pred CCCCHHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 76888999998620304868999999999987788640864444665668669967988868999999999707877971
Q gi|254780829|r 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84 (437)
Q Consensus 5 ~~ltP~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~ 84 (437)
T Consensus 2 ~~ltP~eIv~~LD~yIIGQ~~AKkavAVAlrNr~RR~~l~~~lr~Ei~pkNILmIGPTGvGKTeIARrLAkl~~aPFvkv 81 (442)
T PRK05201 2 SELTPREIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKV 81 (442)
T ss_pred CCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 98998999998536010827766787778877787531662212334643168878888667899999999848985875
Q ss_pred ECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------CCCCHHHHHHHH
Q ss_conf 434101212234310134678887652127899856549888868887555531143-----------211004668988
Q gi|254780829|r 85 EVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGK-----------TATSNTREVFRK 153 (437)
Q Consensus 85 daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ 153 (437)
T Consensus 82 eATk~TEvGYvGrDVEsiIrdLv~~a~~~~k~~~~~~v~~~A~~~a~~ril~~L~~~~~~~~~~~~~~~~~~~tre~~r~ 161 (442)
T PRK05201 82 EATKFTEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEEEESSATRQKFRK 161 (442)
T ss_pred ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 21310003435643788999999999999999999999999999999999998558655555554542023678999999
Q ss_pred HHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 98616888854998753554554433466766632100011010013543221000001023553327888630310111
Q gi|254780829|r 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233 (437)
Q Consensus 154 ~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 233 (437)
T Consensus 162 ~Lr~G~Ldd~~IeIev~~~~~~~~~--~~~g~~~~~~~l~~~~~~~~~~-~~kkr~~tVkeA~~iL~~eEa~klid~d~v 238 (442)
T PRK05201 162 KLREGELDDKEIEIEVADAPGVEIM--GPPGMEEMGNQLQDMFGNLGPK-KKKKRKLKVKEARKLLIEEEAAKLVDQEEI 238 (442)
T ss_pred HHHCCCCCCCEEEEEECCCCCCCCC--CCCCHHHHHHHHHHHHHCCCCC-CCCEEEEEHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 9865886655578861577777777--8875155666799876402788-874046469999999999999862488999
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCC
Q ss_conf 23678887532221002221001357665654332101223432046652211246664202466401675422112125
Q gi|254780829|r 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLL 313 (437)
Q Consensus 234 ~~~a~~~~~~~~~~f~~~~~ki~~~~~~~~~~~~~~g~~~~~~~~~e~~~v~~~~~~~~~~~~~~i~~~~~~~~k~~gli 313 (437)
T Consensus 239 ~~eAi~~aEq~GIVFIDEIDKIa~~~~~~g~DVS~EGVQrdLLpivEGt~V~tK~G~V~TdhILFIasGAFh~sKPSDLI 318 (442)
T PRK05201 239 KQEAIERVEQNGIVFIDEIDKIAKRGEGSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVAKPSDLI 318 (442)
T ss_pred HHHHHHHHHHCCCEEECHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHH
T ss_conf 99999988761704511465653035788989773307888788753885556777602550345504500147820224
Q ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 54334512688615542467888764346889999999987519689984249999999999840400123724679999
Q gi|254780829|r 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393 (437)
Q Consensus 314 pE~~GR~p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~LrtI~ 393 (437)
T Consensus 319 PEl~GRlPv~v~L~~L~~~dl~~ILtepknsL~kQy~~Lf~~egv~L~Ft~~Al~~IA~~A~~~n~~~~~iGAR~L~tI~ 398 (442)
T PRK05201 319 PELQGRFPIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVM 398 (442)
T ss_pred HHHCCCCEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf 98717550588824499999999967861578999999986249679984799999999999851447667737889999
Q ss_pred HHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99867762127568776899859999989999985213454129
Q gi|254780829|r 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 (437)
Q Consensus 394 E~~l~d~~fe~p~~~~~~v~Id~~~V~~~l~~l~e~~Dls~~~l 437 (437)
T Consensus 399 E~vl~d~~Fe~p~~~~~~v~I~~~~V~~~l~~i~~~~DlskyIL 442 (442)
T PRK05201 399 EKLLEDISFEAPDRSGEKITIDAAYVDEKLGDLVKDEDLSRYIL 442 (442)
T ss_pred HHHHHHHCCCCCCCCCCEEEECHHHHHHHHHHHHHCCCCHHHCC
T ss_conf 99989861468899997799889999999988763556054209