HHsearch alignment for GI: 254780829 and conserved domain: PRK08084

>PRK08084 DNA replication initiation factor; Provisional.
Probab=97.11  E-value=0.0011  Score=43.32  Aligned_cols=84  Identities=17%  Similarity=0.194  Sum_probs=51.5

Q ss_pred             CCCCCCCCCE--EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf             2554334512--68861554246788876434688999999998751968998424999999999984040012372467
Q gi|254780829|r  312 LLPEIQGRFP--VRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL  389 (437)
Q Consensus       312 lipE~~GR~p--~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~L  389 (437)
T Consensus       148 ~l~DL~SRl~~g~~~~i~~~dde~~~~iL~~-----------~a~~rgl--~l~~~V~~yl~~~~~R--------~~~~L  206 (235)
T PRK08084        148 GLPDLASRLDWGQIYKLQPLSDEEKLQALQL-----------RARLRGF--ELPEDVGRFLLKRLDR--------EMRTL  206 (235)
T ss_pred             CCHHHHHHHHCCCEEEECCCCHHHHHHHHHH-----------HHHHCCC--CCCHHHHHHHHHHCCC--------CHHHH
T ss_conf             1288999995697278559998999999999-----------9997399--9998999999986158--------89999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCEEEECHHHHHHHH
Q ss_conf             9999998677621275687768998599999899
Q gi|254780829|r  390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI  423 (437)
Q Consensus       390 rtI~E~~l~d~~fe~p~~~~~~v~Id~~~V~~~l  423 (437)
T Consensus       207 ~~~l~~Ld~-~Sl------~~kr~iTip~vkevL  233 (235)
T PRK08084        207 FMTLDQLDK-ASI------TAQRKLTIPFVKEIL  233 (235)
T ss_pred             HHHHHHHHH-HHH------HCCCCCCHHHHHHHH
T ss_conf             999999999-999------819999999999996