HHsearch alignment for GI: 254780829 and conserved domain: PRK08084
>PRK08084 DNA replication initiation factor; Provisional.
Probab=97.11 E-value=0.0011 Score=43.32 Aligned_cols=84 Identities=17% Similarity=0.194 Sum_probs=51.5
Q ss_pred CCCCCCCCCE--EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 2554334512--68861554246788876434688999999998751968998424999999999984040012372467
Q gi|254780829|r 312 LLPEIQGRFP--VRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 (437)
Q Consensus 312 lipE~~GR~p--~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~L 389 (437)
T Consensus 148 ~l~DL~SRl~~g~~~~i~~~dde~~~~iL~~-----------~a~~rgl--~l~~~V~~yl~~~~~R--------~~~~L 206 (235)
T PRK08084 148 GLPDLASRLDWGQIYKLQPLSDEEKLQALQL-----------RARLRGF--ELPEDVGRFLLKRLDR--------EMRTL 206 (235)
T ss_pred CCHHHHHHHHCCCEEEECCCCHHHHHHHHHH-----------HHHHCCC--CCCHHHHHHHHHHCCC--------CHHHH
T ss_conf 1288999995697278559998999999999-----------9997399--9998999999986158--------89999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEEECHHHHHHHH
Q ss_conf 9999998677621275687768998599999899
Q gi|254780829|r 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 (437)
Q Consensus 390 rtI~E~~l~d~~fe~p~~~~~~v~Id~~~V~~~l 423 (437)
T Consensus 207 ~~~l~~Ld~-~Sl------~~kr~iTip~vkevL 233 (235)
T PRK08084 207 FMTLDQLDK-ASI------TAQRKLTIPFVKEIL 233 (235)
T ss_pred HHHHHHHHH-HHH------HCCCCCCHHHHHHHH
T ss_conf 999999999-999------819999999999996