HHsearch alignment for GI: 254780829 and conserved domain: PRK08116

Probab=98.25  E-value=2.3e-06  Score=60.72  Aligned_cols=73  Identities=23%  Similarity=0.412  Sum_probs=44.5

Q ss_pred             CCCHHH-HHHHHHHCEE--CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH---CC
Q ss_conf             688899-9998620304--86899999999998778864086444466566866996798886899999999970---78
Q gi|254780829|r    6 NFSPRE-IVSELDRYII--GQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA---GA   79 (437)
Q Consensus         6 ~ltP~~-i~~~Ld~~Vv--GQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l---~V   79 (437)
T Consensus        67 s~i~~~f~~~tFeN~~~~~~~~~a~~-~a~~Y~~~f~~~~~--------~~~GLll~G~~GtGKThLa~aIa~~l~~~g~  137 (262)
T PRK08116         67 SLLDEKFRNSTFENWLFRKGSEKAYK-VAVKYVKKFEEMKK--------ESVGLLLWGSPGNGKTYLAAAIANELIEKGV  137 (262)
T ss_pred             CCCCHHHHHCCCCCCCCCCCHHHHHH-HHHHHHHHHHHHCC--------CCCEEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             59998898192225568952599999-99999998987364--------6861899898999899999999999998799


Q ss_pred             CEEEEECC
Q ss_conf             77971434
Q gi|254780829|r   80 PFIKVEVT   87 (437)
Q Consensus        80 PF~~~daT   87 (437)
T Consensus       138 ~V~~~~~~  145 (262)
T PRK08116        138 PVVFVNVP  145 (262)
T ss_pred             EEEEEEHH
T ss_conf             39998899