HHsearch alignment for GI: 254780829 and conserved domain: PRK09302

>PRK09302 circadian clock protein KaiC; Reviewed.
Probab=95.91  E-value=0.0078  Score=37.76  Aligned_cols=32  Identities=28%  Similarity=0.455  Sum_probs=23.8

Q ss_pred             CCEEEECCCCCCHHHHHHHHH----HHHCCCEEEEE
Q ss_conf             866996798886899999999----97078779714
Q gi|254780829|r   54 KNILLVGPTGVGKTAISRRLA----RLAGAPFIKVE   85 (437)
Q Consensus        54 sNiLLiGPtGtGKTlLAktLA----~~l~VPF~~~d   85 (437)
T Consensus        25 ~~~LV~G~pGsGKTtla~QfL~~Ga~~~GE~~lyit   60 (501)
T PRK09302         25 RPTLVSGTAGTGKTLFALQFLHNGIKSFGEPGVFVT   60 (501)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             779998389999999999999999885599789998