HHsearch alignment for GI: 254780829 and conserved domain: PRK09302
>PRK09302 circadian clock protein KaiC; Reviewed.
Probab=95.91 E-value=0.0078 Score=37.76 Aligned_cols=32 Identities=28% Similarity=0.455 Sum_probs=23.8
Q ss_pred CCEEEECCCCCCHHHHHHHHH----HHHCCCEEEEE
Q ss_conf 866996798886899999999----97078779714
Q gi|254780829|r 54 KNILLVGPTGVGKTAISRRLA----RLAGAPFIKVE 85 (437)
Q Consensus 54 sNiLLiGPtGtGKTlLAktLA----~~l~VPF~~~d 85 (437)
T Consensus 25 ~~~LV~G~pGsGKTtla~QfL~~Ga~~~GE~~lyit 60 (501)
T PRK09302 25 RPTLVSGTAGTGKTLFALQFLHNGIKSFGEPGVFVT 60 (501)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 779998389999999999999999885599789998