HHsearch alignment for GI: 254780829 and conserved domain: PRK11608

>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional.

Probab=98.03  E-value=7.8e-06  Score=57.24  Aligned_cols=62  Identities=26%  Similarity=0.465  Sum_probs=48.5

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCEEEC
Q ss_conf             30486899999999998778864086444466566866996798886899999999970---787797143410121
Q gi|254780829|r   19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA---GAPFIKVEVTKFTEI   92 (437)
Q Consensus        19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l---~VPF~~~daT~ftE~   92 (437)
T Consensus         7 ~liG~S~~m~~v~~~~----~~~A~--------~~~pVLI~GE~GtGK~~~Ar~IH~~S~r~~~pfi~v~C~~l~~~   71 (325)
T PRK11608          7 NLLGEANSFLEVLEQV----SHLAP--------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN   71 (325)
T ss_pred             CCEECCHHHHHHHHHH----HHHHC--------CCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHH
T ss_conf             9858999999999999----99968--------89998988989837999999999658867999778877989977