HHsearch alignment for GI: 254780829 and conserved domain: PRK12422
>PRK12422 chromosomal replication initiation protein; Provisional.
Probab=98.05 E-value=0.00012 Score=49.46 Aligned_cols=71 Identities=20% Similarity=0.310 Sum_probs=42.3
Q ss_pred HHHHCEECHHHHHH-HHHHHHHHHHHHHCCCCCCCCCCCCCC-EEEECCCCCCHHHHHHHHHHHHCCC---EEEEECCCE
Q ss_conf 86203048689999-999999877886408644446656686-6996798886899999999970787---797143410
Q gi|254780829|r 15 ELDRYIIGQQDAKR-AVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAISRRLARLAGAP---FIKVEVTKF 89 (437)
Q Consensus 15 ~Ld~~VvGQ~~AKk-~lavav~nhy~R~~~~~~~~~e~~psN-iLLiGPtGtGKTlLAktLA~~l~VP---F~~~daT~f 89 (437)
T Consensus 109 tFd~FVvG~~N~lA~~aa~~va------~~~~~~--~g~~yNPLfIyG~~GlGKTHLL~AIgn~i~~~~~kV~Yvtae~F 180 (455)
T PRK12422 109 TFANFLVTPENDLPFRILQEFA------KVSEQG--KGFPFNPIYLFGPEGSGKTHLMQAAVSALRESGGKILYVSSELF 180 (455)
T ss_pred CCCCEEECCCCHHHHHHHHHHH------HCCCCC--CCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECHHHH
T ss_conf 3558331586099999999998------375535--88767875887899997899999999985379986999749999
Q ss_pred EECC
Q ss_conf 1212
Q gi|254780829|r 90 TEIG 93 (437)
Q Consensus 90 tE~g 93 (437)
T Consensus 181 ~~~~ 184 (455)
T PRK12422 181 TEHL 184 (455)
T ss_pred HHHH
T ss_conf 9999