HHsearch alignment for GI: 254780829 and conserved domain: PRK12422

>PRK12422 chromosomal replication initiation protein; Provisional.
Probab=98.05  E-value=0.00012  Score=49.46  Aligned_cols=71  Identities=20%  Similarity=0.310  Sum_probs=42.3

Q ss_pred             HHHHCEECHHHHHH-HHHHHHHHHHHHHCCCCCCCCCCCCCC-EEEECCCCCCHHHHHHHHHHHHCCC---EEEEECCCE
Q ss_conf             86203048689999-999999877886408644446656686-6996798886899999999970787---797143410
Q gi|254780829|r   15 ELDRYIIGQQDAKR-AVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAISRRLARLAGAP---FIKVEVTKF   89 (437)
Q Consensus        15 ~Ld~~VvGQ~~AKk-~lavav~nhy~R~~~~~~~~~e~~psN-iLLiGPtGtGKTlLAktLA~~l~VP---F~~~daT~f   89 (437)
T Consensus       109 tFd~FVvG~~N~lA~~aa~~va------~~~~~~--~g~~yNPLfIyG~~GlGKTHLL~AIgn~i~~~~~kV~Yvtae~F  180 (455)
T PRK12422        109 TFANFLVTPENDLPFRILQEFA------KVSEQG--KGFPFNPIYLFGPEGSGKTHLMQAAVSALRESGGKILYVSSELF  180 (455)
T ss_pred             CCCCEEECCCCHHHHHHHHHHH------HCCCCC--CCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECHHHH
T ss_conf             3558331586099999999998------375535--88767875887899997899999999985379986999749999


Q ss_pred             EECC
Q ss_conf             1212
Q gi|254780829|r   90 TEIG   93 (437)
Q Consensus        90 tE~g   93 (437)
T Consensus       181 ~~~~  184 (455)
T PRK12422        181 TEHL  184 (455)
T ss_pred             HHHH
T ss_conf             9999