HHsearch alignment for GI: 254780829 and conserved domain: TIGR00382
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=98.38 E-value=6e-08 Score=70.95 Aligned_cols=82 Identities=34% Similarity=0.555 Sum_probs=63.2
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCC--CCCCCCHHHHHHHCCCCCCCCC-----------
Q ss_conf 278886303101112367888753222100222100135766565--4332101223432046652211-----------
Q gi|254780829|r 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST----------- 286 (437)
Q Consensus 220 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~~~ki~~~~~~~~~--~~~~~g~~~~~~~~~e~~~v~~----------- 286 (437)
T Consensus 198 VENIL~~Llq~ad~----DV~kA~kGIiYIDEIDKIaRkSEN~SITRDVSGEGVQQALLKi~EGTvA~vPPqGGRKHP~~ 273 (452)
T TIGR00382 198 VENILLKLLQAADY----DVEKAQKGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPQQ 273 (452)
T ss_pred HHHHHHHHHHHCCC----CHHHHCCCEEEEECCCCHHHHCCCCEEEEEECCCHHHHHHHHHHHCCEEEECCCCCCCCCCC
T ss_conf 88999999874145----52452785089842231012157780112217554999999876032343175448868865
Q ss_pred CCCCCCCCHHHHHHCCCCC
Q ss_conf 2466642024664016754
Q gi|254780829|r 287 KYGSINTDHILFIASGAFH 305 (437)
Q Consensus 287 ~~~~~~~~~~~~i~~~~~~ 305 (437)
T Consensus 274 ~~iqiDTs~ILFICGGAF~ 292 (452)
T TIGR00382 274 EFIQIDTSNILFICGGAFV 292 (452)
T ss_pred CEEEECCCCEEEEECCHHH
T ss_conf 7688647640011054344