HHsearch alignment for GI: 254780829 and conserved domain: TIGR00382

>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=98.38  E-value=6e-08  Score=70.95  Aligned_cols=82  Identities=34%  Similarity=0.555  Sum_probs=63.2

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCC--CCCCCCHHHHHHHCCCCCCCCC-----------
Q ss_conf             278886303101112367888753222100222100135766565--4332101223432046652211-----------
Q gi|254780829|r  220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-----------  286 (437)
Q Consensus       220 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~~~ki~~~~~~~~~--~~~~~g~~~~~~~~~e~~~v~~-----------  286 (437)
T Consensus       198 VENIL~~Llq~ad~----DV~kA~kGIiYIDEIDKIaRkSEN~SITRDVSGEGVQQALLKi~EGTvA~vPPqGGRKHP~~  273 (452)
T TIGR00382       198 VENILLKLLQAADY----DVEKAQKGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPQQ  273 (452)
T ss_pred             HHHHHHHHHHHCCC----CHHHHCCCEEEEECCCCHHHHCCCCEEEEEECCCHHHHHHHHHHHCCEEEECCCCCCCCCCC
T ss_conf             88999999874145----52452785089842231012157780112217554999999876032343175448868865


Q ss_pred             CCCCCCCCHHHHHHCCCCC
Q ss_conf             2466642024664016754
Q gi|254780829|r  287 KYGSINTDHILFIASGAFH  305 (437)
Q Consensus       287 ~~~~~~~~~~~~i~~~~~~  305 (437)
T Consensus       274 ~~iqiDTs~ILFICGGAF~  292 (452)
T TIGR00382       274 EFIQIDTSNILFICGGAFV  292 (452)
T ss_pred             CEEEECCCCEEEEECCHHH
T ss_conf             7688647640011054344