HHsearch alignment for GI: 254780829 and conserved domain: TIGR00635

>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=99.26  E-value=7.2e-11  Score=89.88  Aligned_cols=69  Identities=26%  Similarity=0.469  Sum_probs=57.2

Q ss_pred             HHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECC
Q ss_conf             8620304868999999999987788640864444665668669967988868999999999707877971434101212
Q gi|254780829|r   15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG   93 (437)
Q Consensus        15 ~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~g   93 (437)
T Consensus         2 ~L~eF-iGQ~~vk~~L~l~I~-------AAk-~R~e-~LDH~LL~GPPGLGKTTLA~IiA~Emg~~l~iTsGP~L~kPg   70 (305)
T TIGR00635         2 LLAEF-IGQEKVKEQLQLFIE-------AAK-MRQE-ALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPG   70 (305)
T ss_pred             CCHHC-CCCHHHHHHHHHHHH-------HHH-HCCC-CCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHH
T ss_conf             80110-582889999999999-------998-2489-734166317568746789999999838932674067554757