HHsearch alignment for GI: 254780829 and conserved domain: TIGR01243
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=99.53 E-value=1e-14 Score=114.79 Aligned_cols=159 Identities=17% Similarity=0.142 Sum_probs=118.1
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 66866996798886899999999970787797143410121223431013467888765212789985654988886888
Q gi|254780829|r 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAE 131 (437)
Q Consensus 52 ~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~ 131 (437)
T Consensus 239 PPkG~ll~GPPGtGktllaka~ane~~a~f~~inGPeimsk-y~Ge~e----~~lr~if~eaeenaP~iifideidaiaP 313 (980)
T TIGR01243 239 PPKGVLLYGPPGTGKTLLAKAVANEAGAYFIAINGPEIMSK-YYGESE----ERLREIFKEAEENAPSIIFIDEIDAIAP 313 (980)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHH-HCCCCH----HHHHHHHHHHHHCCCCEEEEECHHHCCC
T ss_conf 98735875589861789999987530551788506034433-136307----8999999865305870787412110076
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEE
Q ss_conf 75555311432110046689889861688885499875355455443346676663210001101001354322100000
Q gi|254780829|r 132 ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211 (437)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (437)
T Consensus 314 kr~e~--~Gev-e~r~v~qlltlmdGlk~rG~v~viGatnrP~a~dPal--rrPGrfdrei~~~~Pd~~~r~eil~~htr 388 (980)
T TIGR01243 314 KREEV--TGEV-EKRVVAQLLTLMDGLKGRGKVIVIGATNRPDALDPAL--RRPGRFDREIEIGVPDKEGRKEILQIHTR 388 (980)
T ss_pred CCCCH--HHHH-HHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHH--CCCCCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 41000--0168-8999999999974002487289981468850026224--27886443357418854567888876414
Q ss_pred HHHHHHHHH
Q ss_conf 102355332
Q gi|254780829|r 212 VQKCYPELM 220 (437)
Q Consensus 212 ~~~a~~~~~ 220 (437)
T Consensus 389 ~mP~~~d~~ 397 (980)
T TIGR01243 389 NMPLAEDVD 397 (980)
T ss_pred CCCCHHHCC
T ss_conf 787501100