HHsearch alignment for GI: 254780829 and conserved domain: TIGR02397
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=98.74 E-value=1.6e-07 Score=68.10 Aligned_cols=48 Identities=29% Similarity=0.562 Sum_probs=41.5
Q ss_pred EECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 0486899999999998778864086444466566866996798886899999999970787
Q gi|254780829|r 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80 (437)
Q Consensus 20 VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VP 80 (437)
T Consensus 16 ~~GQ~~iv~tL~NAi~----~~r---------i~HAYLF~GpRGtGKTS~ARIfAKaLNC~ 63 (363)
T TIGR02397 16 VIGQEHIVKTLKNAIK----NGR---------IAHAYLFSGPRGTGKTSIARIFAKALNCQ 63 (363)
T ss_pred CCCCHHHHHHHHHHHH----HCC---------CCCEEEECCCCCCCHHHHHHHHHHHHCCC
T ss_conf 2351799999999997----189---------66234502859976355899999986588