HHsearch alignment for GI: 254780829 and conserved domain: TIGR02533
>TIGR02533 type_II_gspE general secretory pathway protein E; InterPro: IPR013369 GspE, the E protein of the type II secretion system, is also referred to as the main terminal branch of the general secretion pathway. ; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex.
Probab=96.66 E-value=0.00084 Score=44.05 Aligned_cols=93 Identities=12% Similarity=0.066 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCC--C--CCCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf 355332788863031011123678887532221002221001357665--6--543321012234320466522112466
Q gi|254780829|r 215 CYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN--G--IGVSREGVQRDLLPLVEGSSVSTKYGS 290 (437)
Q Consensus 215 a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~~~ki~~~~~~~--~--~~~~~~g~~~~~~~~~e~~~v~~~~~~ 290 (437)
T Consensus 346 LHTNDAAgAvtRL~D--MGvEPFL~aSsl~GVLAQRLVRrlCp~Cke~y~a~~~~~~~~G~~~~~~~--~~nGv~~lyr~ 421 (495)
T TIGR02533 346 LHTNDAAGAVTRLID--MGVEPFLLASSLLGVLAQRLVRRLCPHCKEPYEATDEELALLGISKKEPK--KDNGVIILYRP 421 (495)
T ss_pred HHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCHHHHC--CCCCEEEEECC
T ss_conf 554015446655532--58640489999999998633433151468889989799985488402103--57764899778
Q ss_pred CCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf 642024664016754221121255433451268861
Q gi|254780829|r 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHL 326 (437)
Q Consensus 291 ~~~~~~~~i~~~~~~~~k~~glipE~~GR~p~~v~l 326 (437)
T Consensus 422 ~GC~~C---------------~~~GY~GRtGIyElL 442 (495)
T TIGR02533 422 VGCPAC---------------NHTGYRGRTGIYELL 442 (495)
T ss_pred CCCHHH---------------CCCCCCCCEEEEEEE
T ss_conf 764212---------------788883550368867