HHsearch alignment for GI: 254780829 and conserved domain: TIGR02538
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB; InterPro: IPR013374 This model describes a protein involved in type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly, and is closely related to GspE (IPR013369 from INTERPRO) of type II secretion systems (also referred to as the main terminal branch of the general secretion pathway). Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0009297 pilus biogenesis.
Probab=96.82 E-value=0.00048 Score=45.64 Aligned_cols=50 Identities=8% Similarity=-0.066 Sum_probs=25.1
Q ss_pred EEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHCCC
Q ss_conf 0000010235533278886303101112367888753222100222100135
Q gi|254780829|r 207 KIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVAR 258 (437)
Q Consensus 207 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~~~ki~~~ 258 (437)
T Consensus 419 TGHLVlSTLHTNdAp~Tl~RL~NM--GiapFNIASSV~LI~AQRLARRLCs~ 468 (577)
T TIGR02538 419 TGHLVLSTLHTNDAPETLARLVNM--GIAPFNIASSVNLIMAQRLARRLCSH 468 (577)
T ss_pred CCCCEECCCCCCCHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 487210100016858999999753--84137999999999999755240313